mRNA_F-serratus_M_contig630.17154.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig630.17154.1
Unique NamemRNA_F-serratus_M_contig630.17154.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig630.17154.1 vs. uniprot
Match: D8LS06_ECTSI (Calponin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS06_ECTSI)

HSP 1 Score: 299 bits (766), Expect = 2.800e-91
Identity = 202/443 (45.60%), Postives = 260/443 (58.69%), Query Frame = 3 
Query:  114 KAAEQSEGTRPICLSSSSLPGLPSKKIAMNSAWKNMVARFE---KKNALGEVTSPDASRRGVRCVPQPKPSTMRSTE--------HLEVMGRAAQAWMEAITGRPFQPYGTRAFARNLKTGQRLCELVNAIRPGTISEVHDSQKGFKQIENIECFLAACSKLGVPNHALVDPRDIHEMKDTAAVVACVHALGSAVQASCPAFQGPHLGVSADRSLVAALPPPEDENVKCTEEESETRPCTPCPRSSVNEDSFSSDTNAETVGKAVRIRSEVEASDEAGVLKKALRGNTEGSNETSALILNMQDVARPRSLRRGFNTRVGTLSDLRPPAPLSARARKMCPEEVAYSPRALVYDTDPIGHPARSPTVSKLKSSTSADGGGFFLSAKGKST-NVNSYDMLRGTKARSSSPSSTGSRIKRPSPSGLWAAGNG--PRPGQEHLSQPHA 1400
            +A+   E  RP CL   S P LPSK+   +S   + VARFE   K    G   +P A+R  +  V     +T+R+          HLE   R AQAW+EA++GR    Y T+ FARNL +G+ LC LVNAIRPGTI  VH+SQ GF+Q+ENI  FL+AC KLGV  HALVD  D+ EM+DTA VV CVHALGSAVQ SCP F GPHLG +AD +LVAA+PP +       E+E +         ++V       D       +A  +R+   A  E G  +    G+  G N    L+LNMQDV RPRS RRGF T VG+++DL PPA LSARAR+MCP E+  SPRALV++ DP+GHP RSPT+     S + +GG    +A G+S    ++Y   R  KA +S+ S+T SR    SP+G+W  G G  PR G    + P A
Sbjct:   37 RASRDREDGRPACLPLPSPPRLPSKRTLTDSVMDSTVARFEASCKLTEQGTAAAPSAARTALATVSSAA-NTVRTPSWDKNATPAHLEARERTAQAWIEAVSGRACVEYQTKQFARNLMSGEILCALVNAIRPGTIPHVHESQLGFEQMENINSFLSACCKLGVQAHALVDTADVFEMRDTAKVVECVHALGSAVQVSCPEFGGPHLGPAADPTLVAAVPPAD-------EDEGDDGGXXDGKDNAVXXXXXXXDGAFGDFWRA-SVRTGGNAPREGGGGRD---GDVAGDN---TLVLNMQDVERPRSTRRGFTTTVGSITDLDPPATLSARARQMCPTEMVNSPRALVFNADPVGHPTRSPTLRAAWESNATNGG---RAAAGRSAWGTDAYPAKRAAKA-TSNLSATSSRGMTLSPAGIWGTGAGTAPREGIGKSASPAA 460
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BLAST of mRNA_F-serratus_M_contig630.17154.1 vs. uniprot
Match: A0A6H5JBJ6_9PHAE (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ6_9PHAE)

HSP 1 Score: 285 bits (730), Expect = 8.940e-86
Identity = 203/472 (43.01%), Postives = 260/472 (55.08%), Query Frame = 3 
Query:   27 EQGSGEHGIHSITYVAGVQDELVETPKQGKAAEQS--------EGTRPICLSSSSLPGLPSKKIAMNSAWKNMVARFE---KKNALGEVTSPDASRRGVRCVPQPKPSTMR--------STEHLEVMGRAAQAWMEAITGRPFQPYGTRAFARNLKTGQRLCELVNAIRPGTISEVHDSQKGFKQIENIECFLAACSKLGVPNHALVDPRDIHEMKDTAAVVACVHALGSAVQASCPAFQGPHLGVSADRSLVAALPPP-EDENVKCTEEESETRPCTPCPRSSVNEDSFSSDTNAETVGKAVRIRSEVEASDEAGVLKKALRGNTEGSNET-SALILNMQDVARPRSLRRGFNTRVGTLSDLRPPAPLSARARKMCPEEVAYSPRALVYDTDPIGHPARSPTVSKLKSSTSADGGGFFLSAKGKST-NVNSYDMLRGTKARSSSPSSTGSRIKRPSPSGLWAAGNGPRPGQ 1376
            +QG G  G+   +    V DE   T   G + +          E  +P CL   S P LPSK+   +S   + V+RF+   K +  G   +P A+R  +  V    P+T+R        S   LE   R AQAW+EA++GR    Y T+ FARN+ +G+ LC LVNAIRPGTI  VH+SQ GF+Q+ENI  FL+AC KLGV  HALVD  D+ EM+DTA VV CVHALGSAVQ SCP F GPHLG +AD SLVA +PP  EDE                        D    D    +VG          A  E G       G  +G   + + L+LNMQDV RPRS RRGF T VG+++DL PPA LSARAR+MCP E+  SPRALV++ DP+GHP RSPT+     S + +GG    +A G+S    ++Y   R  K  +S+ S+T SR    SP+G+W  G G  P Q
Sbjct:    4 KQGQGHLGVERPS----VADEKGGTSGGGVSGDDGDSRGSGDREDGKPACLPLPSPPRLPSKRTLTDSVMDSTVSRFKASCKLSDQGTAAAPSAARTALASVSS-APNTVRTPSWDKNASPADLEARERTAQAWIEAVSGRACVAYQTKQFARNIMSGEILCALVNAIRPGTIPRVHESQLGFEQMENINSFLSACCKLGVQAHALVDTADVFEMRDTAKVVECVHALGSAVQVSCPEFGGPHLGPAADPSLVAVVPPADEDEGXXXX-----XXXXXXXXXXXXXXDGAFGDFWRASVGTGGN------APHEGG-------GGHDGDVASDNMLVLNMQDVERPRSTRRGFTTTVGSITDLDPPATLSARARQMCPTEMVNSPRALVFNADPVGHPPRSPTLRAAWESNATNGG---RAAAGRSAWGTDAYPAKRTAKI-TSNLSATSSRGMTLSPAGIWGTGAGAVPRQ 448
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BLAST of mRNA_F-serratus_M_contig630.17154.1 vs. uniprot
Match: A0A835ZHQ8_9STRA (Calponin homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHQ8_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.080e-26
Identity = 61/117 (52.14%), Postives = 79/117 (67.52%), Query Frame = 3 
Query:  354 RAAQAWMEAITGRPFQPYGTRAFARNLKTGQRLCELVNAIRPGTISEVHDSQKGFKQIENIECFLAACSKLGVPNHALVDPRDIHEMKDTAAVVACVHALGSAVQASCPAFQGPHLG 704
            R AQ WMEA+TG  F+     +FA +LK G  LC+L+NAI+PGTI  ++ S+  FKQ+ENI  FL AC  LGV  ++L +  D+ E KD   V+ C+ ALGSAVQ+S P F GPHLG
Sbjct:   28 RTAQEWMEAVTGVKFEG----SFASSLKDGTLLCQLINAIKPGTIKRINSSKMPFKQMENISNFLKACRTLGVAEYSLFETVDLFEEKDVGLVIRCLFALGSAVQSSTPEFAGPHLG 140
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BLAST of mRNA_F-serratus_M_contig630.17154.1 vs. uniprot
Match: A0A7S4V4E0_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4V4E0_9DINO)

HSP 1 Score: 102 bits (253), Expect = 1.380e-19
Identity = 52/113 (46.02%), Postives = 77/113 (68.14%), Query Frame = 3 
Query:  366 AWMEAITGRPFQPYGTRAFARNLKTGQRLCELVNAIRPGTISEVHDSQKGFKQIENIECFLAACSKLGVPNHALVDPRDIHEMKDTAAVVACVHALGSAVQASCPAFQGPHLG 704
            AW+++++G   +  G  +    LK+GQ LC+L+NAI+PG I++V+ S   FKQ+ENI  F+ A  +LGVP  ++    D++E K+  +V+ C+HALGSAVQ SCP F GP LG
Sbjct:  252 AWIQSVSG---EAKGDESPHEWLKSGQVLCKLINAIKPGKIAKVNTSAMPFKQMENITFFMNAARELGVPESSMFGCPDLYEEKNMGSVMNCLHALGSAVQVSCPEFTGPKLG 361
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BLAST of mRNA_F-serratus_M_contig630.17154.1 vs. uniprot
Match: A0A7S2HNZ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HNZ6_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 4.510e-18
Identity = 49/126 (38.89%), Postives = 73/126 (57.94%), Query Frame = 3 
Query:  339 LEVMGRAAQAWMEAITGRPFQPYGTRAFARNLKTGQRLCELVNAIRPGTISEVHDSQKGFKQIENIECFLAACSKLGVPNHALVDPRDIHEMKDTAAVVACVHALGSAVQ--ASCPAFQGPHLGVS 710
            L V    AQ+W+EA+ G PF+      FA  LK G  LC+++NAI+PG+I ++  S+  FKQ+ENI  FL     +G+ +  + D  D++E +D   V+ C+HA G+ VQ  +    F GP L  S
Sbjct:   18 LSVEQDQAQSWIEALLGNPFES----PFADELKDGNVLCQVINAIKPGSIKKISTSKLAFKQMENISIFLKKAKAMGLKDKDVFDTIDLYEARDLCKVIMCIHAFGAVVQQNSGSTGFNGPFLETS 139
[Close]
BLAST of mRNA_F-serratus_M_contig630.17154.1 vs. uniprot
Match: A0A7S4W504_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4W504_9DINO)

HSP 1 Score: 98.2 bits (243), Expect = 1.050e-17
Identity = 54/113 (47.79%), Postives = 65/113 (57.52%), Query Frame = 3 
Query:  369 WMEAITGRPFQPYGTRAFARNLKTGQRLCELVNAIRPGTISEVHDSQKGFKQIENIECFLAACSKLGVPNHALVDPRDIHEMKDTAAVVACVHALGSAVQASCPAFQGPHLGV 707
            W+EAITG      G  +FA  LK+GQ LC + NAIRPG I  V  S   FKQ+ENI  F+    +LGVP  A+    D+ E KD  AVV C++  G  VQ  C  F GP LGV
Sbjct:  364 WIEAITG---LKQGDASFADWLKSGQVLCAVANAIRPGAIKRVSTSPVPFKQMENITMFMNEARELGVPESAMFGTPDLFEEKDLGAVVNCIYTFGGVVQVQCQEFSGPKLGV 473
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BLAST of mRNA_F-serratus_M_contig630.17154.1 vs. uniprot
Match: A0A8J1XW36_OWEFU (Transgelin n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XW36_OWEFU)

HSP 1 Score: 84.0 bits (206), Expect = 6.050e-15
Identity = 46/125 (36.80%), Postives = 67/125 (53.60%), Query Frame = 3 
Query:  342 EVMGRAAQAWMEAITGRPF----QPYGTRAFARNLKTGQRLCELVNAIRPGTISEVHDSQKGFKQIENIECFLAACSKLGVPNHALVDPRDIHEMKDTAAVVACVHALGSAVQASCPAFQGPHLG 704
            E + + A+ W+E +TG        P G   F   LK G+ LC L+NA+RPG++ +++     FK +ENI  FL  C   GV    L    D++E ++  AVV  +HALG A Q +   + GP LG
Sbjct:   24 EDLEQQARHWIEDVTGESLGEGDAPLGLDKFQAVLKDGRHLCNLINALRPGSVKKINAGSMAFKLMENINQFLTGCENFGVQKQDLFQTVDLYEKQNMVAVVNAIHALGRAAQKN--GYNGPVLG 146
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BLAST of mRNA_F-serratus_M_contig630.17154.1 vs. uniprot
Match: A0A7S3WRI5_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WRI5_9SPIT)

HSP 1 Score: 86.7 bits (213), Expect = 1.140e-14
Identity = 47/116 (40.52%), Postives = 70/116 (60.34%), Query Frame = 3 
Query:  360 AQAWMEAITGRPFQPYGTRAFARNLKTGQRLCELVNAIRPGTISEVHDSQKGFKQIENIECFLAACSKLGVPNHALVDPRDIHEMKDTAAVVACVHALGSAVQASCPAFQGPHLGV 707
            A+ W+EA+ GR     G  +    LK+G+ LCEL+N I+PG++S++   +  FKQ+ENI  +L+AC+ +GV +       D+ E K+  AVV  +HALG   Q   P + GP LGV
Sbjct:   70 ARQWIEAVLGRSL---GKGSLQEELKSGEVLCELINKIKPGSVSKISSMKMPFKQMENIGNYLSACTAIGVAHFESFQTVDLFENKNMLAVVTNIHALGRFAQ-RIPGYDGPVLGV 181
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BLAST of mRNA_F-serratus_M_contig630.17154.1 vs. uniprot
Match: UPI000C252B95 (muscle-specific protein 20-like n=1 Tax=Leptinotarsa decemlineata TaxID=7539 RepID=UPI000C252B95)

HSP 1 Score: 82.4 bits (202), Expect = 1.650e-14
Identity = 47/117 (40.17%), Postives = 70/117 (59.83%), Query Frame = 3 
Query:  354 RAAQAWMEAITGRPFQPYGTRAFARNLKTGQRLCELVNAIRPGTISEVHDSQKGFKQIENIECFLAACSKLGVPNHALVDPRDIHEMKDTAAVVACVHALGSAVQASCPAFQGPHLG 704
            + AQAW+EA+TGRPF P G  A+   L+ G  LC+L+N + PG IS+V+ S   +K ++N+  F  AC+K GVP+  L    D+ + K+ A V   + A+G       P ++GP LG
Sbjct:   21 KEAQAWIEAVTGRPF-PAGV-AYEDVLRDGIVLCQLMNRLSPGIISKVNTSGGDYKMMDNLNQFQQACTKYGVPDVDLFQTTDLWDKKNIALVTTTIFAIGRTAHKH-PEWRGPTLG 134
[Close]
BLAST of mRNA_F-serratus_M_contig630.17154.1 vs. uniprot
Match: T1KY43_TETUR (Calponin-homology (CH) domain-containing protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1KY43_TETUR)

HSP 1 Score: 81.6 bits (200), Expect = 4.950e-14
Identity = 43/96 (44.79%), Postives = 58/96 (60.42%), Query Frame = 3 
Query:  420 FARNLKTGQRLCELVNAIRPGTISEVHDSQKGFKQIENIECFLAACSKLGVPNHALVDPRDIHEMKDTAAVVACVHALGSAVQASCPAFQGPHLGV 707
            FA  LK G  LC L+NA+ PG+IS+V+  +  FK+ ENIE FL AC   G+ NH L    D++E K+   VV C+H+LG   Q     + GP +GV
Sbjct:   64 FAEALKDGIALCNLINALAPGSISKVNKLKTPFKERENIELFLKACETYGLRNHDLFQVNDLYERKNLYMVVNCLHSLGGLAQKK--GYDGPVIGV 157
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig630.17154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS06_ECTSI2.800e-9145.60Calponin domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JBJ6_9PHAE8.940e-8643.01Calponin-homology (CH) domain-containing protein n... [more]
A0A835ZHQ8_9STRA1.080e-2652.14Calponin homology domain-containing protein n=1 Ta... [more]
A0A7S4V4E0_9DINO1.380e-1946.02Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S2HNZ6_9STRA4.510e-1838.89Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S4W504_9DINO1.050e-1747.79Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A8J1XW36_OWEFU6.050e-1536.80Transgelin n=1 Tax=Owenia fusiformis TaxID=6347 Re... [more]
A0A7S3WRI5_9SPIT1.140e-1440.52Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
UPI000C252B951.650e-1440.17muscle-specific protein 20-like n=1 Tax=Leptinotar... [more]
T1KY43_TETUR4.950e-1444.79Calponin-homology (CH) domain-containing protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig630contigF-serratus_M_contig630:151813..157758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score307.4
Seed ortholog evalue1.3e-80
Seed eggNOG ortholog2880.D8LS06
KEGG koko:K06084,ko:K15411,ko:K20526
KEGG Pathwayko04520,ko05168,map04520,map05168
Hectar predicted targeting categoryother localisation
EggNOG free text desc.actin binding
EggNOG OGsCOG5199@1,KOG2046@2759
Ec32 ortholog descriptionCalponin homology domain
Ec32 orthologEc-08_001650.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121,ko04131
Exons11
Model size1791
Cds size1563
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931946.5771573-UTR-F-serratus_M_contig630:151812..1518351622931946.5771573-UTR-F-serratus_M_contig630:151812..151835Fucus serratus maleUTRF-serratus_M_contig630 151813..151835 +
1690964070.4836206-UTR-F-serratus_M_contig630:151812..1518351690964070.4836206-UTR-F-serratus_M_contig630:151812..151835Fucus serratus maleUTRF-serratus_M_contig630 151813..151835 +
1622931946.8683991-UTR-F-serratus_M_contig630:157553..1577581622931946.8683991-UTR-F-serratus_M_contig630:157553..157758Fucus serratus maleUTRF-serratus_M_contig630 157554..157758 +
1690964070.6250114-UTR-F-serratus_M_contig630:157553..1577581690964070.6250114-UTR-F-serratus_M_contig630:157553..157758Fucus serratus maleUTRF-serratus_M_contig630 157554..157758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931946.595157-CDS-F-serratus_M_contig630:151835..1518951622931946.595157-CDS-F-serratus_M_contig630:151835..151895Fucus serratus maleCDSF-serratus_M_contig630 151836..151895 +
1690964070.5044782-CDS-F-serratus_M_contig630:151835..1518951690964070.5044782-CDS-F-serratus_M_contig630:151835..151895Fucus serratus maleCDSF-serratus_M_contig630 151836..151895 +
1622931946.6159341-CDS-F-serratus_M_contig630:152862..1529841622931946.6159341-CDS-F-serratus_M_contig630:152862..152984Fucus serratus maleCDSF-serratus_M_contig630 152863..152984 +
1690964070.5168614-CDS-F-serratus_M_contig630:152862..1529841690964070.5168614-CDS-F-serratus_M_contig630:152862..152984Fucus serratus maleCDSF-serratus_M_contig630 152863..152984 +
1622931946.6421506-CDS-F-serratus_M_contig630:153235..1533611622931946.6421506-CDS-F-serratus_M_contig630:153235..153361Fucus serratus maleCDSF-serratus_M_contig630 153236..153361 +
1690964070.5254774-CDS-F-serratus_M_contig630:153235..1533611690964070.5254774-CDS-F-serratus_M_contig630:153235..153361Fucus serratus maleCDSF-serratus_M_contig630 153236..153361 +
1622931946.6669998-CDS-F-serratus_M_contig630:153743..1538511622931946.6669998-CDS-F-serratus_M_contig630:153743..153851Fucus serratus maleCDSF-serratus_M_contig630 153744..153851 +
1690964070.5334969-CDS-F-serratus_M_contig630:153743..1538511690964070.5334969-CDS-F-serratus_M_contig630:153743..153851Fucus serratus maleCDSF-serratus_M_contig630 153744..153851 +
1622931946.6881683-CDS-F-serratus_M_contig630:154038..1541231622931946.6881683-CDS-F-serratus_M_contig630:154038..154123Fucus serratus maleCDSF-serratus_M_contig630 154039..154123 +
1690964070.5415733-CDS-F-serratus_M_contig630:154038..1541231690964070.5415733-CDS-F-serratus_M_contig630:154038..154123Fucus serratus maleCDSF-serratus_M_contig630 154039..154123 +
1622931946.7248535-CDS-F-serratus_M_contig630:154592..1547121622931946.7248535-CDS-F-serratus_M_contig630:154592..154712Fucus serratus maleCDSF-serratus_M_contig630 154593..154712 +
1690964070.5506005-CDS-F-serratus_M_contig630:154592..1547121690964070.5506005-CDS-F-serratus_M_contig630:154592..154712Fucus serratus maleCDSF-serratus_M_contig630 154593..154712 +
1622931946.7528222-CDS-F-serratus_M_contig630:154916..1550771622931946.7528222-CDS-F-serratus_M_contig630:154916..155077Fucus serratus maleCDSF-serratus_M_contig630 154917..155077 +
1690964070.561014-CDS-F-serratus_M_contig630:154916..1550771690964070.561014-CDS-F-serratus_M_contig630:154916..155077Fucus serratus maleCDSF-serratus_M_contig630 154917..155077 +
1622931946.7690814-CDS-F-serratus_M_contig630:155393..1555741622931946.7690814-CDS-F-serratus_M_contig630:155393..155574Fucus serratus maleCDSF-serratus_M_contig630 155394..155574 +
1690964070.5722475-CDS-F-serratus_M_contig630:155393..1555741690964070.5722475-CDS-F-serratus_M_contig630:155393..155574Fucus serratus maleCDSF-serratus_M_contig630 155394..155574 +
1622931946.799881-CDS-F-serratus_M_contig630:155993..1561101622931946.799881-CDS-F-serratus_M_contig630:155993..156110Fucus serratus maleCDSF-serratus_M_contig630 155994..156110 +
1690964070.585771-CDS-F-serratus_M_contig630:155993..1561101690964070.585771-CDS-F-serratus_M_contig630:155993..156110Fucus serratus maleCDSF-serratus_M_contig630 155994..156110 +
1622931946.8218873-CDS-F-serratus_M_contig630:156641..1568181622931946.8218873-CDS-F-serratus_M_contig630:156641..156818Fucus serratus maleCDSF-serratus_M_contig630 156642..156818 +
1690964070.6001098-CDS-F-serratus_M_contig630:156641..1568181690964070.6001098-CDS-F-serratus_M_contig630:156641..156818Fucus serratus maleCDSF-serratus_M_contig630 156642..156818 +
1622931946.8379571-CDS-F-serratus_M_contig630:157247..1575531622931946.8379571-CDS-F-serratus_M_contig630:157247..157553Fucus serratus maleCDSF-serratus_M_contig630 157248..157553 +
1690964070.61333-CDS-F-serratus_M_contig630:157247..1575531690964070.61333-CDS-F-serratus_M_contig630:157247..157553Fucus serratus maleCDSF-serratus_M_contig630 157248..157553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig630.17154.1prot_F-serratus_M_contig630.17154.1Fucus serratus malepolypeptideF-serratus_M_contig630 151836..157553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig630.17154.1

>prot_F-serratus_M_contig630.17154.1 ID=prot_F-serratus_M_contig630.17154.1|Name=mRNA_F-serratus_M_contig630.17154.1|organism=Fucus serratus male|type=polypeptide|length=521bp
MEQGSGEHGIHSITYVAGVQDELVETPKQGKAAEQSEGTRPICLSSSSLP
GLPSKKIAMNSAWKNMVARFEKKNALGEVTSPDASRRGVRCVPQPKPSTM
RSTEHLEVMGRAAQAWMEAITGRPFQPYGTRAFARNLKTGQRLCELVNAI
RPGTISEVHDSQKGFKQIENIECFLAACSKLGVPNHALVDPRDIHEMKDT
AAVVACVHALGSAVQASCPAFQGPHLGVSADRSLVAALPPPEDENVKCTE
EESETRPCTPCPRSSVNEDSFSSDTNAETVGKAVRIRSEVEASDEAGVLK
KALRGNTEGSNETSALILNMQDVARPRSLRRGFNTRVGTLSDLRPPAPLS
ARARKMCPEEVAYSPRALVYDTDPIGHPARSPTVSKLKSSTSADGGGFFL
SAKGKSTNVNSYDMLRGTKARSSSPSSTGSRIKRPSPSGLWAAGNGPRPG
QEHLSQPHAKVCTSALPDTRGGVGVEKEAYFADARVEETMTTTEEVDGER
GSRPAGDGEEPQGSPIGSSV*
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mRNA from alignment at F-serratus_M_contig630:151813..157758+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig630.17154.1 ID=mRNA_F-serratus_M_contig630.17154.1|Name=mRNA_F-serratus_M_contig630.17154.1|organism=Fucus serratus male|type=mRNA|length=5946bp|location=Sequence derived from alignment at F-serratus_M_contig630:151813..157758+ (Fucus serratus male)
ATAATTTGCCGTCTAAGTCCAAGATGGAGCAAGGCTCGGGGGAACACGGA
ATACACAGTATAACTTATGTAGCTGGAGTACAGGTGAGTCATGGAATAAT
AAGGAGCCTTCGCCGTTCTCAAATAATACGCAACTTTGGAAGTCCTCAAT
GCTCGCCTGGGCATCTGTCGTATTTCAACACGAAAAGGGAAAAATTGAAA
AATTGTTGTTCATTTTTTTATGATGACTATAATAATAGACGAAGAGGTGT
GCGGTGTCGCTTAGTCGCGAACTCCTAGCCGGTACTTTCAACATGCCCAC
TTCATACCAATAGTGGGTGTGGGAAAGAGAGGCGCAAGTTAATTGGTCCA
TGGCGGTCTGTCAAGACAGCACCCGTTTGGAACTATACCTTGAGGTTTAC
TGGCCCTGTGCCGGTGGATTCTCGGCAGTGAGAATGCCATCTGTGATAAG
GTACCTATTACACCACAGGGTAAAAGTCAATTGACAATAATTACAACTCG
GTAATCAGTCCATATAACACTCCCCACCCACATAATTTGACTAGCCGGTG
ATCAAGCGGACTAGATAATTCGATAAGGTCTTGAGTGTAGGGGCATACGT
ACGGAGTACCACCGTTTTTTTAAGAAAAATGCGAACGCGCCTAAACAAAC
CGATATTTTGCGTGACGGACTGACCCGATGCCGTTTGGCGGTATGAATAA
GTAAAAATGTGGACGTCGCCGCGAAAATGGGGAGGAATCCCGTAAGTAAG
CACCAGATTCGGCCTGAGTATGGAGATGAGCAGGCTGACGCGAGACGGGA
CTGCCGAACCCGTCTCGCGGGACCAAATTCTCAGGCGTGGCCGGGGACAG
AGAAATATTAATTTTCCTTGTTCAGCCGACCAAGAGCGGGATTGGCCACC
TTACCTGATTGGTCCTACTCTTGCTATAGGTGATGACCATACATGCATAC
GTACATTCTTCATAATATTTTGTTCAAACAATTAAAAATACAACACACTC
GTGGGGCCATTGAAAAACTTGCGGTGCATAAAATGACACGGCATAAGAAG
GACGAGCTGGTCGAGACCCCCAAACAAGGCAAAGCTGCGGAACAGAGCGA
AGGGACTCGGCCGATCTGCCTCTCGTCCTCGTCACTTCCCGGCCTACCGT
CGAAGAAGATAGCCATGAACAGGCGAGATCGACGCACTTATATCCTTCAA
CTTATATCAACAAATTAAGCGAAATTTGACTGAAGGCCCCAGGGTACACT
GTTCAGCAATCGATTTCCGCACACCTGCTACGCCGTTTTGTCGCGAAACG
TTGAGCCGCAATTAATATGCCGCGGGTGTTTGTACCAACATAGCAGCTTG
CATCGAACACCAGAAGAAGTAGTCCCTATCCCAAACCTCCCGCCACTACT
TGCGCGTCGCCACCGCCGTGCAGCGCGTGGAAGAATATGGTGGCTCGCTT
TGAGAAGAAAAATGCGTTGGGTGAGGTGACGAGCCCTGATGCATCAAGGA
GAGGTGTACGATGTGTGCCTCAGCCTAAACCGTCAACGATGCGGTCCACG
TAAGTCTTTTTTAAGTCAAGAGCTGATGGTATACTGCACAACCAGCAGTA
GAGAGCAATCGTTTAAGCACCGAGAAGTTATCGGTTGGGACTTCTGAGAC
AGTGCGTGTACATCCCCCGATGGAATTGGCCGAAACGTTCTCGGCGAACC
ATCGAATGTATTGCTGTGAGGAGCTTGAGAGTGTCAAAAAACAGTTGAAA
CATTGATGGCGCTCTGGCACGTATACGTAGCAGCGTACAAGTATAGCTTT
TCTTTGAGCCACAGCGAGGCAGTAAATGGGTCCCTTCTCGCGCACTTGTG
TATCGCAGCTATGGCCGTTCACTTTCCGCGCGTGTCACGCACGTAAATGG
AAATAGTTTCCATTGTTTCCGGCCACTCTAGGGAACACCTTGAGGTCATG
GGGCGCGCGGCCCAAGCTTGGATGGAAGCTATCACGGGAAGGCCGTTCCA
GCCGTATGGAACTCGGGCCTTCGCCAGAAATTTGAAGACGTGAGGAAGGC
CGGCTTCTAAGCACTCTATGTATAGTAGGCTTCGTCTTCGTAACACGGTG
TGGATTCTCTTTAGATCGTACGGTGTCATCTTGCGCGTGTTTGCGCGGGC
TGACCGTACATGCCCCATCCTAGGACTACAAGCCGCTGACCTCAAATTCA
TCCCGACCTCGTCCTAAATCTTGCAGAGGACAACGCCTTTGCGAGCTGGT
TAATGCCATTCGCCCTGGGACGATCTCAGAAGTACACGACAGCCAGAAAG
GCTTTAAACAGGTGCGCATTTTTTTTTCACGTGAGCAACTGAATCTACGC
GCGCAACATATATTGCTAGTGGTATTGTGGCGTTTGCGCGAACTGTCACG
AAGTTACGTTGCTTAGAAAGGCGGTCAAGTGGCAGACGATGTGTCATTGA
AGTTGGCAAACATGAAGGGGTGCTCGACGCTCTAGGGGAGTCTCCTGTAG
AAAGATACGAGTTGTCACGACAGCAGCCACAGTAATTGTTTTTTTAGAGC
CTACTGTACACTATACATGTACACGATACATGTACACTATACATGTAGAC
TATATCATACATGTACACTAGACATGTACACTAGACATGTACACTAGACA
TTTACAATATACATGTACACTATACATGCACACTATATATGTACACTATA
CATGAACACTACACATGTACACTACACATGAACACTACACATGTACACTA
TCTACCCTGTGGCGTTTCCACCGCGGCCAGATTGAGAATATCGAGTGCTT
CTTGGCGGCGTGTAGCAAGCTCGGAGTGCCCAACCACGCCCTTGTCGACC
CAAGAGACATCCACGAAATGAAGGACACGGCCGCGGTGGTTGCGTGCGTG
GTGAGCTATCTCCTTGTACAAACGGGTTGGTGAGGGACGAATCCCAGACG
TAGCCGACGCTTCACCTCCGGGTGGACGGAACTCTCTTGAACGATGACTT
GAACCCGCCCTCCTGTCGCCCCCTCTCATTCCTCGTCGGATGATATTCGA
TTGCTCCTTTCCCTCAACACGACCGGCGATCATCTTGCTGTTGGGGTTGT
GAAGCACGCGCTCGGGAGCGCGGTGCAAGCTTCCTGCCCTGCGTTTCAAG
GCCCCCACCTCGGGGTCTCCGCCGACCGGTCGCTTGTGGCAGCGTTGCCA
CCCCCAGAGGACGAAAACGTGAAATGCACTGAGGAGGAAAGCGAAACACG
ACCTTGCACCCCATGGTAAGATAGAGGTGGGGATTCATGCCAACCTTTCC
CCCTCGCGCCTTCGAGCGACACCGTAAGCGGAGGCTTTTAAACGCGCTTC
CACGTCCCAAGTGCGCACCGTTCGGGCGAAGCCCCATCTAAAACTTTTTT
GAAGACGCAGCCGGAGTCAGTAGACCAGCCTTCTCGGCTTCCTGCATGCA
GTACCTACGCGGGAGAAACAACCCAACCCACTTGTTATTCGTACTCTCGT
CGCTTCTTTCGCGTCTGACGGCTTTTTTTTTGCCCCAATCGCCGGACTGG
CTCGGGAAAATACAAACGTGTCAATTGTAAGCCCGCGTTCATCGGTGAAC
GAAGACTCTTTCTCATCCGACACAAACGCTGAGACGGTCGGGAAGGCGGT
CCGCATAAGGAGCGAAGTAGAAGCGTCAGATGAGGCGGGAGTACTCAAGA
AAGCGTTGCGGGGAAATACGGAGGGTTCAAACGAGACATCGGCCCTGATT
CTCAACATGCAGGTGATGCCGGCGATGCCACGAGGGGTACCGTGCGCTTG
TTCTCGTTGAAACCTGCAGAATCGAGAAGGGAAAGATACAAGAATCACTT
ACCCGAACGATTATCTGACGATTTAAGCGCTTCGCTTGCCTCCATTTTGA
AGCGACGCATGGTGCTGAGTTTTGTGTCCGGCGCCGAAAGAATACGGTCG
AGTATATGGCGGTGCCTGAGCAAGGCAACAGTCCCAACACGGGGCTGCGG
CTCTACGCCCGATCTACAGTGGACCTTGCTTAAGTTTTTTCTTGTGTACG
CGCTGCAAACGATTGCCCTGAGAGTCGACGAATTGTTGGCCGTTGGTCAG
CTCAACCACCGTGCTCTGTCGTTTGTCCTGACTTTTCTTTGAGCTCTCGA
TCACTTTTCCTTTTGCCATGTGTCGTCGCAGGATGTGGCGCGCCCACGCT
CACTCCGGCGGGGGTTTAATACTAGGGTGGGAACGCTATCAGACCTCCGT
CCCCCCGCTCCGCTATCCGCTCGCGCTCGCAAGATGTGCCCCGAGGAGGT
GCGGCACTTGACCTCACCAGGTCGTGGGGTCCTGGGAATAACACTTGCTT
AAAATGATCGCCGGGGGAAGGGGGGAGGTCGGGAAGCGGTCCCTCGAGCG
AACGCTGTACGCGCTACTCAAACGCGCTCGAAACCGCTGCTACAATGCCT
CTCGATCGATCTTACGTGCCGAAGCATTACATCAGATCTGCGCCCGTGAG
TGCATACCAGCTCGAGGACGGGTGATCGTCGATCAATCGGCGCATGGTGT
TCCGTTACGTGCGTACTTTTCGCCCTGCCCCCCGCTGCCACATGGTAAAC
CCTCGATAGGTCGATAGGTTATTTCCGCCCCTCCCCCATCGTTGTCAACG
GTAAAAAAAAAACATATTGTTTCCCAAACTTCTGGAATTCGCCTCCGTCA
CATTTTGCAAGAGATATCCAAGTCACGAGGAGATGGGGTTAGGACCCTGC
GATCAGTTCCTAAAAACATGCATAGACATGTATTTATATGTATATATATA
TATAGTATCTATATTATTTTTTGGTACAGGTTGCATATTCACCTCGCGCC
TTGGTCTACGACACGGATCCTATTGGACACCCCGCGCGATCTCCGACGGT
CAGCAAGCTCAAGTCGTCAACCTCGGCCGACGGCGGTGGCTTCTTCCTAA
GTGCCAAGGGCAAGAGCACTAACGTCAACTCGTACGACATGCTGCGCGGG
ACGAAGGTTTATTATTTCGTTGAGCGAACCTTACCCTTTGATTAGTTTTT
TTTTTCCATTGCGTTGCGTGAAAACAGAAGCTTTTGTTCCGTGCCATGTG
CCATGTGCCATGTTGTGAGTGCCGTACCGAGGATTAGGTATCACGACTTC
GGGAACGATTGCGTTGTTCGATAAATTCTCCACGCTGTCTTCAGAAAAGG
TAAGTTGTTTTTAGCAATAGCAGTACGACAAGATTTTGGACAAGATCTTG
GCGTTACGATGACGTGTGATCGTGATCGGGTCTACAGCTTAGCATTACAC
TACTGTTGATACGCTGACCATGATGAGACAAGGAGATAACTCTGGGAAAC
AAGCGGTGCACACGCCCCGAGCTGTGAGGCATCCCTAATTCGTCCCCGTC
TTCGGTTGAACCACGCCCTTCCGCCCCCCAACCAGGCCCGTTCTTCCAGT
CCGTCGTCTACCGGCTCCCGCATCAAAAGGCCCTCGCCATCAGGCCTCTG
GGCAGCGGGGAACGGCCCAAGACCGGGCCAAGAGCATCTGTCCCAGCCCC
ACGCCAAGGTTTGCACCTCCGCCCTTCCCGACACTCGTGGCGGAGTTGGG
GTTGAAAAGGAAGCTTATTTCGCCGATGCACGGGTTGAAGAGACAATGAC
CACGACGGAGGAGGTCGACGGTGAGCGGGGATCACGTCCTGCCGGTGATG
GGGAGGAGCCACAAGGATCACCTATCGGAAGCTCGGTGTGATGTGGGCGA
GCTCCATAGCTCGGCGGTATTAGAGACGCCCGCGTGTCGCGTGCGGCGAT
CAGCTGCTTTGCGAGCAGCTCAGTTTTTCTGCCTTCATGCGGCAGAGAGG
TCATAGTCTATATACTTGTTTTTATTAATGTACACGTTTCGGCGCCGGAG
CCGGAAAGAAAGGTTTTGTCCTGCAGAGCGGCGACTATAACGCTAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig630:151813..157758+

>mRNA_F-serratus_M_contig630.17154.1 ID=mRNA_F-serratus_M_contig630.17154.1|Name=mRNA_F-serratus_M_contig630.17154.1|organism=Fucus serratus male|type=CDS|length=3126bp|location=Sequence derived from alignment at F-serratus_M_contig630:151813..157758+ (Fucus serratus male)
ATGGAGCAAGGCTCGGGGGAACACGGAATACACAGTATAACTTATGTAGC
TGGAGTACAGATGGAGCAAGGCTCGGGGGAACACGGAATACACAGTATAA
CTTATGTAGCTGGAGTACAGGACGAGCTGGTCGAGACCCCCAAACAAGGC
AAAGCTGCGGAACAGAGCGAAGGGACTCGGCCGATCTGCCTCTCGTCCTC
GTCACTTCCCGGCCTACCGTCGAAGAAGATAGCCATGAACAGGACGAGCT
GGTCGAGACCCCCAAACAAGGCAAAGCTGCGGAACAGAGCGAAGGGACTC
GGCCGATCTGCCTCTCGTCCTCGTCACTTCCCGGCCTACCGTCGAAGAAG
ATAGCCATGAACAGCGCGTGGAAGAATATGGTGGCTCGCTTTGAGAAGAA
AAATGCGTTGGGTGAGGTGACGAGCCCTGATGCATCAAGGAGAGGTGTAC
GATGTGTGCCTCAGCCTAAACCGTCAACGATGCGGTCCACCGCGTGGAAG
AATATGGTGGCTCGCTTTGAGAAGAAAAATGCGTTGGGTGAGGTGACGAG
CCCTGATGCATCAAGGAGAGGTGTACGATGTGTGCCTCAGCCTAAACCGT
CAACGATGCGGTCCACGGAACACCTTGAGGTCATGGGGCGCGCGGCCCAA
GCTTGGATGGAAGCTATCACGGGAAGGCCGTTCCAGCCGTATGGAACTCG
GGCCTTCGCCAGAAATTTGAAGACGGAACACCTTGAGGTCATGGGGCGCG
CGGCCCAAGCTTGGATGGAAGCTATCACGGGAAGGCCGTTCCAGCCGTAT
GGAACTCGGGCCTTCGCCAGAAATTTGAAGACAGGACAACGCCTTTGCGA
GCTGGTTAATGCCATTCGCCCTGGGACGATCTCAGAAGTACACGACAGCC
AGAAAGGCTTTAAACAGAGGACAACGCCTTTGCGAGCTGGTTAATGCCAT
TCGCCCTGGGACGATCTCAGAAGTACACGACAGCCAGAAAGGCTTTAAAC
AGATTGAGAATATCGAGTGCTTCTTGGCGGCGTGTAGCAAGCTCGGAGTG
CCCAACCACGCCCTTGTCGACCCAAGAGACATCCACGAAATGAAGGACAC
GGCCGCGGTGGTTGCGTGCGTGATTGAGAATATCGAGTGCTTCTTGGCGG
CGTGTAGCAAGCTCGGAGTGCCCAACCACGCCCTTGTCGACCCAAGAGAC
ATCCACGAAATGAAGGACACGGCCGCGGTGGTTGCGTGCGTGCACGCGCT
CGGGAGCGCGGTGCAAGCTTCCTGCCCTGCGTTTCAAGGCCCCCACCTCG
GGGTCTCCGCCGACCGGTCGCTTGTGGCAGCGTTGCCACCCCCAGAGGAC
GAAAACGTGAAATGCACTGAGGAGGAAAGCGAAACACGACCTTGCACCCC
ATGCACGCGCTCGGGAGCGCGGTGCAAGCTTCCTGCCCTGCGTTTCAAGG
CCCCCACCTCGGGGTCTCCGCCGACCGGTCGCTTGTGGCAGCGTTGCCAC
CCCCAGAGGACGAAAACGTGAAATGCACTGAGGAGGAAAGCGAAACACGA
CCTTGCACCCCATGCCCGCGTTCATCGGTGAACGAAGACTCTTTCTCATC
CGACACAAACGCTGAGACGGTCGGGAAGGCGGTCCGCATAAGGAGCGAAG
TAGAAGCGTCAGATGAGGCGGGAGTACTCAAGAAAGCGTTGCGGGGAAAT
ACGGAGGGTTCAAACGAGACATCGGCCCTGATTCTCAACATGCAGCCCGC
GTTCATCGGTGAACGAAGACTCTTTCTCATCCGACACAAACGCTGAGACG
GTCGGGAAGGCGGTCCGCATAAGGAGCGAAGTAGAAGCGTCAGATGAGGC
GGGAGTACTCAAGAAAGCGTTGCGGGGAAATACGGAGGGTTCAAACGAGA
CATCGGCCCTGATTCTCAACATGCAGGATGTGGCGCGCCCACGCTCACTC
CGGCGGGGGTTTAATACTAGGGTGGGAACGCTATCAGACCTCCGTCCCCC
CGCTCCGCTATCCGCTCGCGCTCGCAAGATGTGCCCCGAGGAGGATGTGG
CGCGCCCACGCTCACTCCGGCGGGGGTTTAATACTAGGGTGGGAACGCTA
TCAGACCTCCGTCCCCCCGCTCCGCTATCCGCTCGCGCTCGCAAGATGTG
CCCCGAGGAGGTTGCATATTCACCTCGCGCCTTGGTCTACGACACGGATC
CTATTGGACACCCCGCGCGATCTCCGACGGTCAGCAAGCTCAAGTCGTCA
ACCTCGGCCGACGGCGGTGGCTTCTTCCTAAGTGCCAAGGGCAAGAGCAC
TAACGTCAACTCGTACGACATGCTGCGCGGGACGAAGGTTGCATATTCAC
CTCGCGCCTTGGTCTACGACACGGATCCTATTGGACACCCCGCGCGATCT
CCGACGGTCAGCAAGCTCAAGTCGTCAACCTCGGCCGACGGCGGTGGCTT
CTTCCTAAGTGCCAAGGGCAAGAGCACTAACGTCAACTCGTACGACATGC
TGCGCGGGACGAAGGCCCGTTCTTCCAGTCCGTCGTCTACCGGCTCCCGC
ATCAAAAGGCCCTCGCCATCAGGCCTCTGGGCAGCGGGGAACGGCCCAAG
ACCGGGCCAAGAGCATCTGTCCCAGCCCCACGCCAAGGTTTGCACCTCCG
CCCTTCCCGACACTCGTGGCGGAGTTGGGGTTGAAAAGGAAGCTTATTTC
GCCGATGCACGGGTTGAAGAGACAATGACCACGACGGAGGAGGTCGACGG
TGAGCGGGGATCACGTCCTGCCGGTGATGGGGAGGAGCCACAAGGATCAC
CTATCGGAAGCTCGGTGTGAGCCCGTTCTTCCAGTCCGTCGTCTACCGGC
TCCCGCATCAAAAGGCCCTCGCCATCAGGCCTCTGGGCAGCGGGGAACGG
CCCAAGACCGGGCCAAGAGCATCTGTCCCAGCCCCACGCCAAGGTTTGCA
CCTCCGCCCTTCCCGACACTCGTGGCGGAGTTGGGGTTGAAAAGGAAGCT
TATTTCGCCGATGCACGGGTTGAAGAGACAATGACCACGACGGAGGAGGT
CGACGGTGAGCGGGGATCACGTCCTGCCGGTGATGGGGAGGAGCCACAAG
GATCACCTATCGGAAGCTCGGTGTGA
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