mRNA_F-serratus_M_contig1220.1715.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1220.1715.1
Unique NamemRNA_F-serratus_M_contig1220.1715.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1220.1715.1 vs. uniprot
Match: A0A6H5JW81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW81_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 3.050e-49
Identity = 84/124 (67.74%), Postives = 95/124 (76.61%), Query Frame = 1
Query:    1 MFEAARLFNFTYVKLHPLDISDIEILEEVFPFVNTDVVHNLELEKPDYNIAASNADAGHDLWSFWHVNRLKLPFWYNVAKDVALIQPSSAFMERVFSILRACLDERQETCYSDRIRASAFLKYN 372
            +FE ARL NFT+VK H L+ SD+ IL EV PFV   VV  L  E   YN+AA+  DAG DLW+FWH NRLKL  WYNVAKDVALIQPSSAFMERVFS+LRAC+D+RQE C  DRI A+A LKYN
Sbjct:  275 LFEGARLLNFTFVKGHQLEESDVHILPEVLPFVTPTVVAALVEEMDAYNVAAAETDAGCDLWAFWHDNRLKLSAWYNVAKDVALIQPSSAFMERVFSVLRACVDDRQEHCLLDRIEAAALLKYN 398          
BLAST of mRNA_F-serratus_M_contig1220.1715.1 vs. uniprot
Match: A0A6H5KSI8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI8_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.360e-48
Identity = 82/126 (65.08%), Postives = 98/126 (77.78%), Query Frame = 1
Query:    1 MFEAARLFNFTYVKLHPLDISDIEILEEVFPFVNTDVVHNLELEKPDYNIAASNADAGHDLWSFWHVNRLKLPFWYNVAKDVALIQPSSAFMERVFSILRACLDERQETCYSDRIRASAFLKYNRG 378
            +F+AAR+ NF  V  H ++ SD+ +L EVFPFV T +VH L +EK  Y+ AA+  D+G DLW+FWH NR +LP WYNVAKDVALIQPSSAFMERVFS+LRAC+DERQE C SDRI AS  LKYNR 
Sbjct:  384 VFKAARILNFRVVTGHGVEESDVHVLAEVFPFVTTAMVHELVVEKDLYSTAAAGTDSGCDLWAFWHDNRPELPAWYNVAKDVALIQPSSAFMERVFSLLRACMDERQEQCLSDRITASTLLKYNRA 509          
BLAST of mRNA_F-serratus_M_contig1220.1715.1 vs. uniprot
Match: A0A6H5KPF8_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF8_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 1.870e-48
Identity = 82/124 (66.13%), Postives = 94/124 (75.81%), Query Frame = 1
Query:    1 MFEAARLFNFTYVKLHPLDISDIEILEEVFPFVNTDVVHNLELEKPDYNIAASNADAGHDLWSFWHVNRLKLPFWYNVAKDVALIQPSSAFMERVFSILRACLDERQETCYSDRIRASAFLKYN 372
            +FE ARL NFT+VK H L+ SD+ IL EV PFV   VV  L  E   YN+AA+  DAG DLW+FWH NRLKL  WY VAKD+ALIQPSSAFMERVFS+LRAC+D+RQE C  DRI A+A LKYN
Sbjct:   26 LFEGARLLNFTFVKGHQLEESDVHILAEVLPFVTPTVVAALVEEMDAYNVAAAETDAGCDLWAFWHDNRLKLSAWYKVAKDIALIQPSSAFMERVFSVLRACVDDRQEHCLLDRIEAAALLKYN 149          
BLAST of mRNA_F-serratus_M_contig1220.1715.1 vs. uniprot
Match: A0A6H5JIR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR3_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 4.780e-43
Identity = 81/128 (63.28%), Postives = 96/128 (75.00%), Query Frame = 1
Query:    1 MFEAARLFNFTYVKLHPLDISDIEILEEVFPFVNTDVVHNLELEKPDYNIAASNADAGHDLWSFWHVNRLK--LPFWYNVAKDVALIQPSSAFMERVFSILRACLDERQETCYSDRIRASAFLKYNRG 378
            +FEAARL +F YVK H L ++DI++L   FPFV  + V  L+ +  DYNIAAS  D G+DLWSFWH NR K  L  WY VAKD+ L+QPSSAFMERVFSILRAC+D RQE  +SDR+ ASA LKYNRG
Sbjct:  628 IFEAARLLDFRYVKQHQLHVADIDLLCR-FPFVTENDVARLKDQMDDYNIAASGVDTGYDLWSFWHDNRHKSSLCHWYGVAKDIVLLQPSSAFMERVFSILRACMDARQEKSFSDRVAASALLKYNRG 754          
BLAST of mRNA_F-serratus_M_contig1220.1715.1 vs. uniprot
Match: A0A6H5K4E0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4E0_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 9.170e-37
Identity = 62/124 (50.00%), Postives = 84/124 (67.74%), Query Frame = 1
Query:    7 EAARLFNFTYVKLHPLDISDIEILEEVFPFVNTDVVHNLELEKPDYNIAASNADAGHDLWSFWHVNRLKLPFWYNVAKDVALIQPSSAFMERVFSILRACLDERQETCYSDRIRASAFLKYNRG 378
            EAARL +FT+++ H    +++  L  VFPF++ + V  L  EK DY +AA   D  +D W FW  ++ KLP W+ V  D+AL+QPSSAFMERVFS + +CLD  Q +C SDRI A+A +KYNRG
Sbjct:    2 EAARLIDFTFMRRHKYSANEVRSLA-VFPFISEEQVDKLLTEKDDYYVAARVTDRDYDFWQFWQDHKEKLPTWFAVVLDIALVQPSSAFMERVFSTVHSCLDSSQNSCLSDRIMAAALIKYNRG 124          
BLAST of mRNA_F-serratus_M_contig1220.1715.1 vs. uniprot
Match: A0A6H5JZH8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH8_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 2.750e-35
Identity = 67/126 (53.17%), Postives = 88/126 (69.84%), Query Frame = 1
Query:    1 MFEAARLFNFTYVKLHPLDISDIEILEEVFPFVNTDVVHNLELEKPDYNIAASNADAGHDLWSFWHVNRLKLPFWYNVAKDVALIQPSSAFMERVFSILRACLDERQETCYSDRIRASAFLKYNRG 378
            +F+AA+L +FTY+K H     +I  L  VFPFV+ D++  L  EK D+ +AA++ D  +D  +FW  N+  LP W+ +  DV L+QPSSAFMERVFSILR C  ERQE+ YSDRI ASA LKY+RG
Sbjct:  266 LFKAAKLTDFTYMKTHKYSNDEIRSLS-VFPFVDDDMMDGLLKEKNDFYVAATDTDTDYDNMTFWSDNKKNLPTWHELVLDVVLLQPSSAFMERVFSILRCCFSERQESVYSDRICASALLKYSRG 390          
BLAST of mRNA_F-serratus_M_contig1220.1715.1 vs. uniprot
Match: A0A6H5JEX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX4_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.050e-33
Identity = 66/126 (52.38%), Postives = 86/126 (68.25%), Query Frame = 1
Query:    1 MFEAARLFNFTYVKLHPLDISDIEILEEVFPFVNTDVVHNLELEKPDYNIAASNADAGHDLWSFWHVNRLKLPFWYNVAKDVALIQPSSAFMERVFSILRACLDERQETCYSDRIRASAFLKYNRG 378
            +F+AA+L +FT++K        I  L+ V PFV   +V  L  EK D+ +AAS+ +A +   +FW+ N+ KLP W+ +  DVAL+QPSSAFMERVFSILR C +ERQE  YSDRI AS  LKYNRG
Sbjct:   30 VFKAAKLTDFTFMKGRKYSDDTIRTLK-VLPFVKKKMVRGLLKEKEDFYMAASDTEAEYGHMAFWNDNKKKLPTWHALVLDVALLQPSSAFMERVFSILRCCFNERQEHVYSDRICASVLLKYNRG 154          
BLAST of mRNA_F-serratus_M_contig1220.1715.1 vs. uniprot
Match: A0A6H5KCX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX4_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.170e-32
Identity = 66/126 (52.38%), Postives = 83/126 (65.87%), Query Frame = 1
Query:    1 MFEAARLFNFTYVKLHPLDISDIEILEEVFPFVNTDVVHNLELEKPDYNIAASNADAGHDLWSFWHVNRLKLPFWYNVAKDVALIQPSSAFMERVFSILRACLDERQETCYSDRIRASAFLKYNRG 378
            MF+AA+L +F ++K        I  L+ V PFV + +V  L  EK DY +AAS+ D  +   +FW  N  +LP W+ +  DVAL+QPSSAFMERVFSIL  C +ERQE  YSDRI ASA LKYNRG
Sbjct:   30 MFKAAKLTDFVFMKSKKYSDDTIRSLK-VLPFVKSKMVKGLLKEKEDYYMAASDTDIEYGHMAFWKDNEKRLPTWHALVLDVALLQPSSAFMERVFSILPCCFNERQEHVYSDRICASALLKYNRG 154          
BLAST of mRNA_F-serratus_M_contig1220.1715.1 vs. uniprot
Match: A0A6H5L6R8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R8_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.300e-31
Identity = 62/124 (50.00%), Postives = 83/124 (66.94%), Query Frame = 1
Query:    7 EAARLFNFTYVKLHPLDISDIEILEEVFPFVNTDVVHNLELEKPDYNIAASNADAGHDLWSFWHVNRLKLPFWYNVAKDVALIQPSSAFMERVFSILRACLDERQETCYSDRIRASAFLKYNRG 378
            EAARL +FT+++ H    +++  L  VFPF++ + V  L  EK DY +AA   D  +D W FW  ++ KLP W+ V  D+AL+QPSSAFMERVFS +R+CLD  Q +C SDRI A A +KYN G
Sbjct:  405 EAARLIDFTFMRRHKYSANEVRSLA-VFPFISEEQVDKLLTEKDDYYVAARVTDRDYDFWQFWQDHKEKLPTWFAVVLDIALVQPSSAFMERVFSTVRSCLDSSQNSCLSDRIMA-ALIKYNGG 526          
BLAST of mRNA_F-serratus_M_contig1220.1715.1 vs. uniprot
Match: A0A6H5JD81_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD81_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 9.470e-31
Identity = 66/126 (52.38%), Postives = 86/126 (68.25%), Query Frame = 1
Query:    1 MFEAARLFNFTYVKLHPLDISDIEILEEVFPFVNTDVVHNLELEKPDYNIAASNADAGHDLWSFWHVNRLKLPFWYNVAKDVALIQPSSAFMERVFSILRACLDERQETCYSDRIRASAFLKYNRG 378
            +F+AA+L +FT++K        I  L+ V PFV   +V  L  EK D+ +AAS+ +A +   +FW+ N+ KLP W+ +  DVAL+QPSSAFMERVFSILR C +ERQE  YSDRI AS  LKYNRG
Sbjct:  558 VFKAAKLTDFTFMKGRKYSDDTIRTLK-VLPFVKKKMVRGLLKEKEDFYMAASDTEAEYGHMAFWNDNKKKLPTWHALVLDVALLQPSSAFMERVFSILRCCFNERQEHVYSDRICASVLLKYNRG 682          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1220.1715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5JW81_9PHAE3.050e-4967.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI8_9PHAE1.360e-4865.08Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KPF8_9PHAE1.870e-4866.13Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JIR3_9PHAE4.780e-4363.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4E0_9PHAE9.170e-3750.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZH8_9PHAE2.750e-3553.17Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEX4_9PHAE1.050e-3352.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCX4_9PHAE1.170e-3252.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6R8_9PHAE1.300e-3150.00Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JD81_9PHAE9.470e-3152.38Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1220contigF-serratus_M_contig1220:164627..165013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size387
Cds size387
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929138.7888758-CDS-F-serratus_M_contig1220:164626..1650131622929138.7888758-CDS-F-serratus_M_contig1220:164626..165013Fucus serratus maleCDSF-serratus_M_contig1220 164627..165013 -
1690962721.1155524-CDS-F-serratus_M_contig1220:164626..1650131690962721.1155524-CDS-F-serratus_M_contig1220:164626..165013Fucus serratus maleCDSF-serratus_M_contig1220 164627..165013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1220.1715.1prot_F-serratus_M_contig1220.1715.1Fucus serratus malepolypeptideF-serratus_M_contig1220 164627..165013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1220.1715.1

>prot_F-serratus_M_contig1220.1715.1 ID=prot_F-serratus_M_contig1220.1715.1|Name=mRNA_F-serratus_M_contig1220.1715.1|organism=Fucus serratus male|type=polypeptide|length=129bp
MFEAARLFNFTYVKLHPLDISDIEILEEVFPFVNTDVVHNLELEKPDYNI
AASNADAGHDLWSFWHVNRLKLPFWYNVAKDVALIQPSSAFMERVFSILR
ACLDERQETCYSDRIRASAFLKYNRGIK*
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mRNA from alignment at F-serratus_M_contig1220:164627..165013-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1220.1715.1 ID=mRNA_F-serratus_M_contig1220.1715.1|Name=mRNA_F-serratus_M_contig1220.1715.1|organism=Fucus serratus male|type=mRNA|length=387bp|location=Sequence derived from alignment at F-serratus_M_contig1220:164627..165013- (Fucus serratus male)
ATGTTCGAGGCTGCGAGACTCTTCAACTTTACTTACGTGAAGCTGCACCC TCTAGACATCTCGGATATCGAGATCCTCGAAGAAGTATTTCCGTTCGTAA ATACGGACGTCGTCCACAACCTTGAACTAGAAAAACCCGACTACAACATT GCGGCGTCTAATGCAGATGCTGGGCACGATCTGTGGAGTTTTTGGCATGT CAACAGACTGAAGCTTCCTTTTTGGTACAATGTAGCGAAGGACGTAGCGT TGATTCAGCCATCTTCTGCTTTCATGGAGCGAGTGTTTTCTATCCTTCGC GCGTGCTTGGACGAGAGGCAAGAGACTTGCTATAGCGACCGAATTAGGGC GTCGGCCTTCCTCAAGTACAACAGGGGAATAAAATAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1220:164627..165013-

>mRNA_F-serratus_M_contig1220.1715.1 ID=mRNA_F-serratus_M_contig1220.1715.1|Name=mRNA_F-serratus_M_contig1220.1715.1|organism=Fucus serratus male|type=CDS|length=774bp|location=Sequence derived from alignment at F-serratus_M_contig1220:164627..165013- (Fucus serratus male)
ATGTTCGAGGCTGCGAGACTCTTCAACTTTACTTACGTGAAGCTGCACCC
TCTAGACATCTCGGATATCGAGATCCTCGAAGAAGTATTTCCGTTCGTAA
ATACGGACGTCGTCCACAACCTTGAACTAGAAAAACCCGACTACAACATT
GCGGCGTCTAATGCAGATGCTGGGCACGATCTGTGGAGTTTTTGGCATGT
CAACAGACTGAAGCTTCCTTTTTGGTACAATGTAGCGAAGGACGTAGCGT
TGATTCAGCCATCTTCTGCTTTCATGGAGCGAGTGTTTTCTATCCTTCGC
GCGTGCTTGGACGAGAGGCAAGAGACTTGCTATAGCGACCGAATTAGGGC
GTCGGCCTTCCTCAAGTACAACAGGGGAATAAAATAAATGTTCGAGGCTG
CGAGACTCTTCAACTTTACTTACGTGAAGCTGCACCCTCTAGACATCTCG
GATATCGAGATCCTCGAAGAAGTATTTCCGTTCGTAAATACGGACGTCGT
CCACAACCTTGAACTAGAAAAACCCGACTACAACATTGCGGCGTCTAATG
CAGATGCTGGGCACGATCTGTGGAGTTTTTGGCATGTCAACAGACTGAAG
CTTCCTTTTTGGTACAATGTAGCGAAGGACGTAGCGTTGATTCAGCCATC
TTCTGCTTTCATGGAGCGAGTGTTTTCTATCCTTCGCGCGTGCTTGGACG
AGAGGCAAGAGACTTGCTATAGCGACCGAATTAGGGCGTCGGCCTTCCTC
AAGTACAACAGGGGAATAAAATAA
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