mRNA_F-serratus_M_contig63.17141.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig63.17141.1
Unique NamemRNA_F-serratus_M_contig63.17141.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig63.17141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig63contigF-serratus_M_contig63:192380..192844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size443
Cds size441
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig63.17141.1prot_F-serratus_M_contig63.17141.1Fucus serratus malepolypeptideF-serratus_M_contig63 192380..192842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931943.028551-CDS-F-serratus_M_contig63:192379..1924871622931943.028551-CDS-F-serratus_M_contig63:192379..192487Fucus serratus maleCDSF-serratus_M_contig63 192380..192487 +
1690964068.6846592-CDS-F-serratus_M_contig63:192379..1924871690964068.6846592-CDS-F-serratus_M_contig63:192379..192487Fucus serratus maleCDSF-serratus_M_contig63 192380..192487 +
1622931943.1248927-CDS-F-serratus_M_contig63:192499..1926101622931943.1248927-CDS-F-serratus_M_contig63:192499..192610Fucus serratus maleCDSF-serratus_M_contig63 192500..192610 +
1690964068.702492-CDS-F-serratus_M_contig63:192499..1926101690964068.702492-CDS-F-serratus_M_contig63:192499..192610Fucus serratus maleCDSF-serratus_M_contig63 192500..192610 +
1622931943.1437619-CDS-F-serratus_M_contig63:192620..1928421622931943.1437619-CDS-F-serratus_M_contig63:192620..192842Fucus serratus maleCDSF-serratus_M_contig63 192621..192842 +
1690964068.7147648-CDS-F-serratus_M_contig63:192620..1928421690964068.7147648-CDS-F-serratus_M_contig63:192620..192842Fucus serratus maleCDSF-serratus_M_contig63 192621..192842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig63.17141.1

>prot_F-serratus_M_contig63.17141.1 ID=prot_F-serratus_M_contig63.17141.1|Name=mRNA_F-serratus_M_contig63.17141.1|organism=Fucus serratus male|type=polypeptide|length=147bp
IRFKRKRPDPRVSRCSCGQRPNRVWRWRSRTRAARQASRRWSGPPTARAS
AADATATAAPATCGDVTTRIAAMQQQHQPQFLRGSHHQQPNSWSSWGRPP
HQQRRGRARHHGRPRQRAMCQQCGELEHFPDDSVITTTVNMPAPSPH
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mRNA from alignment at F-serratus_M_contig63:192380..192844+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig63.17141.1 ID=mRNA_F-serratus_M_contig63.17141.1|Name=mRNA_F-serratus_M_contig63.17141.1|organism=Fucus serratus male|type=mRNA|length=465bp|location=Sequence derived from alignment at F-serratus_M_contig63:192380..192844+ (Fucus serratus male)
ATCAGATTCAAGCGGAAGCGCCCCGACCCACGCGTTAGCCGTTGCTCATG
CGGGCAACGGCCAAACCGGGTCTGGAGGTGGAGGTCGCGGACGAGGGCGG
CAAGGCAGGCGATCTGGCAGGCGTCAAGACGATGGTCGGGGCCACCAACG
GCAAGGGCATCCGCGGCAGATGCAACAGCAACAGCAGCACCAGCCACCTG
CGGCGATGTCACAACACGCATCGCAGCAATGGCAACATCAGCAACAGCAG
CACCAGCCGCAATTTTTACGGGGATCACACCACCAGCAGCCCAACTCTTG
GAGTAGCTGGGGAAGACCACCTCACCAGCAGCGGCGAGGAAGAGCGCGCC
ACCACGGTAGACCTCGACAGCGCGCAATGTGCCAGCAGTGTGGTGAGTTG
GAGCATTTCCCCGATGACTCTGTAATAACCACAACCGTGAACATGCCCGC
ACCATCACCGCATTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig63:192380..192844+

>mRNA_F-serratus_M_contig63.17141.1 ID=mRNA_F-serratus_M_contig63.17141.1|Name=mRNA_F-serratus_M_contig63.17141.1|organism=Fucus serratus male|type=CDS|length=882bp|location=Sequence derived from alignment at F-serratus_M_contig63:192380..192844+ (Fucus serratus male)
ATCAGATTCAAGCGGAAGCGCCCCGACCCACGCGTTAGCCGTTGCTCATG
CGGGCAACGGCCAAACCGGGTCTGGAGGTGGAGGTCGCGGACGAGGGCGG
CAAGGCAGATCAGATTCAAGCGGAAGCGCCCCGACCCACGCGTTAGCCGT
TGCTCATGCGGGCAACGGCCAAACCGGGTCTGGAGGTGGAGGTCGCGGAC
GAGGGCGGCAAGGCAGGCGTCAAGACGATGGTCGGGGCCACCAACGGCAA
GGGCATCCGCGGCAGATGCAACAGCAACAGCAGCACCAGCCACCTGCGGC
GATGTCACAACACGCATCGCAGCAATGGCGTCAAGACGATGGTCGGGGCC
ACCAACGGCAAGGGCATCCGCGGCAGATGCAACAGCAACAGCAGCACCAG
CCACCTGCGGCGATGTCACAACACGCATCGCAGCAATGCAACAGCAGCAC
CAGCCGCAATTTTTACGGGGATCACACCACCAGCAGCCCAACTCTTGGAG
TAGCTGGGGAAGACCACCTCACCAGCAGCGGCGAGGAAGAGCGCGCCACC
ACGGTAGACCTCGACAGCGCGCAATGTGCCAGCAGTGTGGTGAGTTGGAG
CATTTCCCCGATGACTCTGTAATAACCACAACCGTGAACATGCCCGCACC
ATCACCGCATCAACAGCAGCACCAGCCGCAATTTTTACGGGGATCACACC
ACCAGCAGCCCAACTCTTGGAGTAGCTGGGGAAGACCACCTCACCAGCAG
CGGCGAGGAAGAGCGCGCCACCACGGTAGACCTCGACAGCGCGCAATGTG
CCAGCAGTGTGGTGAGTTGGAGCATTTCCCCGATGACTCTGTAATAACCA
CAACCGTGAACATGCCCGCACCATCACCGCAT
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