mRNA_F-serratus_M_contig6272.17112.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig6272.17112.1 vs. uniprot
Match: D8LHU1_ECTSI (Putative lipoprotein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHU1_ECTSI) HSP 1 Score: 156 bits (395), Expect = 8.250e-46 Identity = 67/107 (62.62%), Postives = 80/107 (74.77%), Query Frame = 1
Query: 49 LTVALNAAQYDGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFMFEGSHEYYWKIQPRGTKTPVVELMV 369
+ VALN QY S +CGACIEGEG G G G DP+ G+FKAYV D+CPEC GDLDF+ GDGRWDISW FV C G +F+FEGS+E+YWKIQPRG ++PV L +
Sbjct: 72 IPVALNDEQYADSYMCGACIEGEGFGEGEGRDPVEGAFKAYVTDRCPECLFGDLDFAADGDGRWDISWHFVPCEGGSDQTFLFEGSNEFYWKIQPRGGRSPVERLWI 178
BLAST of mRNA_F-serratus_M_contig6272.17112.1 vs. uniprot
Match: D8LRN1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LRN1_ECTSI) HSP 1 Score: 155 bits (393), Expect = 9.880e-45 Identity = 68/107 (63.55%), Postives = 83/107 (77.57%), Query Frame = 1
Query: 49 LTVALNAAQYDGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFMFEGSHEYYWKIQPRGTKTPVVELMV 369
+ VALNA QY S +CGAC+EG SG+G+G++PI +FKA++ DKCPEC GDLDFS SGDGRWDI WKFV CPG +T SF+ ++ YYWK+QPRGT TPVV L V
Sbjct: 137 IPVALNAEQYGDSLMCGACVEGTASGSGSGNNPIPSTFKAFITDKCPECQKGDLDFSMSGDGRWDIEWKFVACPGEET-SFVSPSANPYYWKVQPRGTTTPVVSLTV 242
BLAST of mRNA_F-serratus_M_contig6272.17112.1 vs. uniprot
Match: D8LGP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP4_ECTSI) HSP 1 Score: 154 bits (388), Expect = 4.040e-42 Identity = 67/105 (63.81%), Postives = 78/105 (74.29%), Query Frame = 1
Query: 55 VALNAAQYDGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFMFEGSHEYYWKIQPRGTKTPVVELMV 369
VALN QY S +CGAC+EGEG+G G+GSDP+ G+FK ++MDKCPEC+ GDLDF DGRWDI WKFVECP + SF E EYYWKIQPRGT TPV L +
Sbjct: 346 VALNEPQYGDSLMCGACVEGEGTGGGSGSDPV-GTFKGFIMDKCPECSEGDLDFGTGKDGRWDIKWKFVECPAGEEVSFKVEQKTEYYWKIQPRGTATPVESLTI 449
BLAST of mRNA_F-serratus_M_contig6272.17112.1 vs. uniprot
Match: A0A2V3ISL2_9FLOR (Expansin-YoaJ n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISL2_9FLOR) HSP 1 Score: 142 bits (358), Expect = 1.780e-39 Identity = 63/107 (58.88%), Postives = 79/107 (73.83%), Query Frame = 1
Query: 49 LTVALNAAQYDGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFMFEGSHEYYWKIQPRGTKTPVVELMV 369
L VA+N AQY+ S CGAC++ G G G+G++PI G+FKAYV D+CPEC GD+D SK GDGRW + WKF+ CPG + F+FEGS+ YY K+QPRG KTPV L V
Sbjct: 58 LPVAINNAQYENSASCGACLQVTGYGQGSGANPIRGTFKAYVHDRCPECKYGDIDLSKGGDGRWRVHWKFIPCPG-EFVFFLFEGSNRYYLKLQPRGLKTPVSALSV 163
BLAST of mRNA_F-serratus_M_contig6272.17112.1 vs. uniprot
Match: F2Z7J0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis andersonii TaxID=408198 RepID=F2Z7J0_9FLOR) HSP 1 Score: 137 bits (346), Expect = 1.060e-37 Identity = 59/105 (56.19%), Postives = 78/105 (74.29%), Query Frame = 1
Query: 55 VALNAAQYDGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFMFEGSHEYYWKIQPRGTKTPVVELMV 369
VA+N AQY+ S+ CGAC+ G G G+G++P+ G+FKAYV D+CPEC GD+D SKSGDGRW + W+F+ CPG + F+FEGS+ +Y K+QPRG KTPV V
Sbjct: 55 VAINNAQYEESKSCGACLLVTGYGQGSGANPVVGTFKAYVHDRCPECKYGDIDLSKSGDGRWKVQWRFIPCPG-EWVFFLFEGSNRFYLKLQPRGLKTPVTYFSV 158
BLAST of mRNA_F-serratus_M_contig6272.17112.1 vs. uniprot
Match: A0A6H5KBW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW3_9PHAE) HSP 1 Score: 141 bits (355), Expect = 3.800e-37 Identity = 64/105 (60.95%), Postives = 75/105 (71.43%), Query Frame = 1
Query: 55 VALNAAQYDGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFMFEGSHEYYWKIQPRGTKTPVVELMV 369
VALNAAQY S +CG+C+EGEG+G G G +PI G+FK ++MDKCPEC GDLDF DGRWDI W+FV CPG + SF YYWKIQPRGT TPV L +
Sbjct: 383 VALNAAQYGDSLMCGSCVEGEGTGGGGGDNPI-GTFKGFIMDKCPECHEGDLDFGTGLDGRWDIEWRFVACPGEEV-SFKVVEMTPYYWKIQPRGTATPVESLTI 485
BLAST of mRNA_F-serratus_M_contig6272.17112.1 vs. uniprot
Match: A0A1X6NJE1_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJE1_PORUM) HSP 1 Score: 130 bits (326), Expect = 1.860e-35 Identity = 57/106 (53.77%), Postives = 72/106 (67.92%), Query Frame = 1
Query: 55 VALNAAQYDGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECP-GSDTPSFMFEGSHEYYWKIQPRGTKTPVVELMV 369
VA++ A Y GS CGAC+ GSG+GAG++PITG+F AYVMD+CPECA GDLD + GDGRW +SW V CP P F+ EGS+ +Y K+Q RG P + V
Sbjct: 78 VAVSTADYAGSAACGACLRVTGSGDGAGANPITGTFSAYVMDRCPECAAGDLDLATPGDGRWAVSWTVVPCPTAGGAPEFLLEGSNPHYLKVQVRGLPAPAASVSV 183
BLAST of mRNA_F-serratus_M_contig6272.17112.1 vs. uniprot
Match: A0A2P6NBD6_9EUKA (Endochitinase-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NBD6_9EUKA) HSP 1 Score: 124 bits (311), Expect = 1.540e-30 Identity = 54/104 (51.92%), Postives = 77/104 (74.04%), Query Frame = 1
Query: 46 DLTVALNAAQYDGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECP-GSDTPSFMFEGSHEYYWKIQPRGTKTPV 354
D++VA+ +A + GS CG+CI+ GSG GAGS+P+ G+F A+V D+CP C G LDF+K+GDG WDISWK V+CP G+ + F+GS+E+Y K+Q R +TP+
Sbjct: 367 DVSVAMVSAYWFGSAACGSCIQITGSGKGAGSNPVKGNFTAFVNDQCPTCVPGGLDFAKNGDGLWDISWKVVDCPVGNSGIYYAFQGSNEWYMKVQARNHRTPL 470
BLAST of mRNA_F-serratus_M_contig6272.17112.1 vs. uniprot
Match: A0A2P6NBF0_9EUKA (MAP/microtubule affinity-regulating kinase 3-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NBF0_9EUKA) HSP 1 Score: 124 bits (311), Expect = 1.570e-30 Identity = 54/104 (51.92%), Postives = 77/104 (74.04%), Query Frame = 1
Query: 46 DLTVALNAAQYDGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECP-GSDTPSFMFEGSHEYYWKIQPRGTKTPV 354
D++VA+ +A + GS CG+CI+ GSG GAGS+P+ G+F A+V D+CP C G LDF+K+GDG WDISWK V+CP G+ + F+GS+E+Y K+Q R +TP+
Sbjct: 760 DVSVAMVSAYWFGSAACGSCIQITGSGKGAGSNPVKGNFTAFVNDQCPTCVPGGLDFAKNGDGLWDISWKVVDCPVGNSGIYYAFQGSNEWYMKVQARNHRTPL 863
BLAST of mRNA_F-serratus_M_contig6272.17112.1 vs. uniprot
Match: A0A7S4IRK7_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IRK7_9EUKA) HSP 1 Score: 120 bits (302), Expect = 2.330e-30 Identity = 53/105 (50.48%), Postives = 75/105 (71.43%), Query Frame = 1
Query: 52 TVALNAAQYDGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGS-DTPSFMFEGSHEYYWKIQPRGTKTPVVEL 363
TVA+N+ QY GS CG CI+ G G G+G+DPI G+F YV D CPECA+GDLD ++SGDGRW+I W V+CPG+ ++ +GS++++ K+Q R + PV +L
Sbjct: 52 TVAMNSPQYYGSLTCGMCIQMTGEGVGSGADPIDGTFIVYVSDLCPECASGDLDVAQSGDGRWEIEWTAVDCPGNYGDLQYLGQGSNDFFLKVQVRNHRVPVSQL 156 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6272.17112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6272.17112.1 >prot_F-serratus_M_contig6272.17112.1 ID=prot_F-serratus_M_contig6272.17112.1|Name=mRNA_F-serratus_M_contig6272.17112.1|organism=Fucus serratus male|type=polypeptide|length=123bp PPPFSPPAWSIFYVCDLTVALNAAQYDGSELCGACIEGEGSGNGAGSDPIback to top mRNA from alignment at F-serratus_M_contig6272:22737..23467- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig6272.17112.1 ID=mRNA_F-serratus_M_contig6272.17112.1|Name=mRNA_F-serratus_M_contig6272.17112.1|organism=Fucus serratus male|type=mRNA|length=731bp|location=Sequence derived from alignment at F-serratus_M_contig6272:22737..23467- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig6272:22737..23467- >mRNA_F-serratus_M_contig6272.17112.1 ID=mRNA_F-serratus_M_contig6272.17112.1|Name=mRNA_F-serratus_M_contig6272.17112.1|organism=Fucus serratus male|type=CDS|length=738bp|location=Sequence derived from alignment at F-serratus_M_contig6272:22737..23467- (Fucus serratus male)back to top |