mRNA_F-serratus_M_contig1220.1712.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1220.1712.1
Unique NamemRNA_F-serratus_M_contig1220.1712.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1220.1712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1220contigF-serratus_M_contig1220:48866..49177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size313
Cds size312
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929138.3781283-CDS-F-serratus_M_contig1220:48865..491771622929138.3781283-CDS-F-serratus_M_contig1220:48865..49177Fucus serratus maleCDSF-serratus_M_contig1220 48866..49177 +
1690962720.894833-CDS-F-serratus_M_contig1220:48865..491771690962720.894833-CDS-F-serratus_M_contig1220:48865..49177Fucus serratus maleCDSF-serratus_M_contig1220 48866..49177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1220.1712.1prot_F-serratus_M_contig1220.1712.1Fucus serratus malepolypeptideF-serratus_M_contig1220 48866..49177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1220.1712.1

>prot_F-serratus_M_contig1220.1712.1 ID=prot_F-serratus_M_contig1220.1712.1|Name=mRNA_F-serratus_M_contig1220.1712.1|organism=Fucus serratus male|type=polypeptide|length=104bp
MPREGILQSLKLSETRETMSPKQTYSCASLYDAVFANPWRGVTSCSSGVV
SSVAYKRCWLEDATDAKTSSRRGRWYAAGPVLTSWVQSSFRFQYCLQWWL
RQPV
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mRNA from alignment at F-serratus_M_contig1220:48866..49177+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1220.1712.1 ID=mRNA_F-serratus_M_contig1220.1712.1|Name=mRNA_F-serratus_M_contig1220.1712.1|organism=Fucus serratus male|type=mRNA|length=312bp|location=Sequence derived from alignment at F-serratus_M_contig1220:48866..49177+ (Fucus serratus male)
ATGCCACGAGAGGGTATACTACAAAGTCTCAAGTTATCTGAGACACGAGA
AACGATGTCTCCGAAACAAACATACTCTTGCGCGAGTCTCTACGATGCTG
TATTTGCGAATCCATGGCGAGGTGTGACGTCATGTTCGAGTGGTGTGGTG
TCATCAGTTGCCTACAAGCGATGCTGGCTTGAGGATGCTACCGATGCGAA
GACTTCAAGCAGGCGCGGCAGGTGGTATGCTGCCGGCCCTGTCCTGACAA
GCTGGGTGCAATCGTCTTTTCGCTTTCAATATTGCCTGCAGTGGTGGTTG
AGGCAGCCTGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1220:48866..49177+

>mRNA_F-serratus_M_contig1220.1712.1 ID=mRNA_F-serratus_M_contig1220.1712.1|Name=mRNA_F-serratus_M_contig1220.1712.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig1220:48866..49177+ (Fucus serratus male)
ATGCCACGAGAGGGTATACTACAAAGTCTCAAGTTATCTGAGACACGAGA
AACGATGTCTCCGAAACAAACATACTCTTGCGCGAGTCTCTACGATGCTG
TATTTGCGAATCCATGGCGAGGTGTGACGTCATGTTCGAGTGGTGTGGTG
TCATCAGTTGCCTACAAGCGATGCTGGCTTGAGGATGCTACCGATGCGAA
GACTTCAAGCAGGCGCGGCAGGTGGTATGCTGCCGGCCCTGTCCTGACAA
GCTGGGTGCAATCGTCTTTTCGCTTTCAATATTGCCTGCAGTGGTGGTTG
AGGCAGCCTGTGATGCCACGAGAGGGTATACTACAAAGTCTCAAGTTATC
TGAGACACGAGAAACGATGTCTCCGAAACAAACATACTCTTGCGCGAGTC
TCTACGATGCTGTATTTGCGAATCCATGGCGAGGTGTGACGTCATGTTCG
AGTGGTGTGGTGTCATCAGTTGCCTACAAGCGATGCTGGCTTGAGGATGC
TACCGATGCGAAGACTTCAAGCAGGCGCGGCAGGTGGTATGCTGCCGGCC
CTGTCCTGACAAGCTGGGTGCAATCGTCTTTTCGCTTTCAATATTGCCTG
CAGTGGTGGTTGAGGCAGCCTGTG
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