mRNA_F-serratus_M_contig6270.17110.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6270.17110.1
Unique NamemRNA_F-serratus_M_contig6270.17110.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6270.17110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6270contigF-serratus_M_contig6270:16913..17236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931939.4394665-CDS-F-serratus_M_contig6270:16912..172361622931939.4394665-CDS-F-serratus_M_contig6270:16912..17236Fucus serratus maleCDSF-serratus_M_contig6270 16913..17236 +
1690964067.1095378-CDS-F-serratus_M_contig6270:16912..172361690964067.1095378-CDS-F-serratus_M_contig6270:16912..17236Fucus serratus maleCDSF-serratus_M_contig6270 16913..17236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6270.17110.1prot_F-serratus_M_contig6270.17110.1Fucus serratus malepolypeptideF-serratus_M_contig6270 16913..17236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6270.17110.1

>prot_F-serratus_M_contig6270.17110.1 ID=prot_F-serratus_M_contig6270.17110.1|Name=mRNA_F-serratus_M_contig6270.17110.1|organism=Fucus serratus male|type=polypeptide|length=108bp
MRDTGGSNPTSTSSRREKYHECCYQAESTKTNGQIGTSGIENIYVFELQN
LTITVHCEQHLNAPATITTCLTIRLSLLMPTILEEYKSHQQAERSRPRAA
RLTPMAEC
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mRNA from alignment at F-serratus_M_contig6270:16913..17236+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6270.17110.1 ID=mRNA_F-serratus_M_contig6270.17110.1|Name=mRNA_F-serratus_M_contig6270.17110.1|organism=Fucus serratus male|type=mRNA|length=324bp|location=Sequence derived from alignment at F-serratus_M_contig6270:16913..17236+ (Fucus serratus male)
ATGAGAGATACTGGGGGATCGAACCCCACATCGACCTCGTCACGCAGGGA
AAAGTACCACGAATGCTGCTATCAAGCTGAAAGCACGAAAACAAATGGGC
AAATTGGGACAAGTGGAATCGAAAACATTTATGTTTTCGAGTTACAAAAT
CTCACAATTACAGTACACTGCGAACAGCATCTCAACGCGCCAGCGACTAT
TACTACATGTCTTACAATTCGCCTTAGCCTTCTGATGCCAACCATATTAG
AGGAGTACAAGTCGCATCAACAAGCAGAACGAAGTCGTCCACGTGCAGCC
CGACTTACCCCCATGGCTGAATGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6270:16913..17236+

>mRNA_F-serratus_M_contig6270.17110.1 ID=mRNA_F-serratus_M_contig6270.17110.1|Name=mRNA_F-serratus_M_contig6270.17110.1|organism=Fucus serratus male|type=CDS|length=648bp|location=Sequence derived from alignment at F-serratus_M_contig6270:16913..17236+ (Fucus serratus male)
ATGAGAGATACTGGGGGATCGAACCCCACATCGACCTCGTCACGCAGGGA
AAAGTACCACGAATGCTGCTATCAAGCTGAAAGCACGAAAACAAATGGGC
AAATTGGGACAAGTGGAATCGAAAACATTTATGTTTTCGAGTTACAAAAT
CTCACAATTACAGTACACTGCGAACAGCATCTCAACGCGCCAGCGACTAT
TACTACATGTCTTACAATTCGCCTTAGCCTTCTGATGCCAACCATATTAG
AGGAGTACAAGTCGCATCAACAAGCAGAACGAAGTCGTCCACGTGCAGCC
CGACTTACCCCCATGGCTGAATGCATGAGAGATACTGGGGGATCGAACCC
CACATCGACCTCGTCACGCAGGGAAAAGTACCACGAATGCTGCTATCAAG
CTGAAAGCACGAAAACAAATGGGCAAATTGGGACAAGTGGAATCGAAAAC
ATTTATGTTTTCGAGTTACAAAATCTCACAATTACAGTACACTGCGAACA
GCATCTCAACGCGCCAGCGACTATTACTACATGTCTTACAATTCGCCTTA
GCCTTCTGATGCCAACCATATTAGAGGAGTACAAGTCGCATCAACAAGCA
GAACGAAGTCGTCCACGTGCAGCCCGACTTACCCCCATGGCTGAATGC
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