mRNA_F-serratus_M_contig626.17101.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig626.17101.1 vs. uniprot
Match: A0A5D6Y8Z1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8Z1_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 4.790e-6 Identity = 45/166 (27.11%), Postives = 72/166 (43.37%), Query Frame = 1
Query: 4 DETALMAEGA-YQNFCFDTGASGHMSPDSTGMTNFRQCNKVL--VVANGAQIPIEGYGNLAVEFDNGTDTISLELIDVAHVPFLSYHLFSLRSVVKRGYTYVGDSKGITLKLKSGATFLVPEVGNLYWSRGLRKKDEPDLACAVLTPGAMPTTGVDINTYHRTTGH 492
+E MA A + D+GA+ HMSP+S+ R ++++ VANGA + G++ V G S L DV ++P L L S++ + G + +K VP+VGN+Y + D A V+ G P+ + +H GH
Sbjct: 532 EEITFMATVAPADGWLIDSGATSHMSPESSDFAALRPLSEMIKVTVANGAFVTASEVGDVVVALPGGR---SATLKDVLYIPGLGRRLLSVQKMAAHGLVVEFGERACKIKRGDKVVMAVPKVGNIY------RLDGDAQAAMVVEHGPHPS---ERELWHARLGH 685
BLAST of mRNA_F-serratus_M_contig626.17101.1 vs. uniprot
Match: A0A4Y1ZP29_ARAVE (gag_pre-integrs domain-containing protein (Fragment) n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y1ZP29_ARAVE) HSP 1 Score: 55.8 bits (133), Expect = 5.590e-6 Identity = 34/113 (30.09%), Postives = 54/113 (47.79%), Query Frame = 1
Query: 49 FDTGASGHMSPDSTGMTNFRQCN--KVLVVANGAQIPIEGYGNLAVEFDNGTDTISLELIDVAHVPFLSYHLFSLRSVVKRGYTYVGDSKGITLKLKSG-ATFLVPEVGNLYW 378
FDT A+ H S D M N+R +V V G P+EG G + +EF + ++ L++V + P L +L S + K G+ +V + + + K G F G LY+
Sbjct: 282 FDTAATSHFSCDKDSMLNYRPVKGAEVSVAIGGVTCPVEGTGEVELEFYKNGECETITLLNVLYSPKLKQNLISGSKIDKAGHNFVCNKNILNVYHKDGHKLFYAKRQGGLYY 394
BLAST of mRNA_F-serratus_M_contig626.17101.1 vs. uniprot
Match: A0A4Y2NTP2_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=9 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2NTP2_ARAVE) HSP 1 Score: 55.8 bits (133), Expect = 6.280e-6 Identity = 34/113 (30.09%), Postives = 54/113 (47.79%), Query Frame = 1
Query: 49 FDTGASGHMSPDSTGMTNFRQCN--KVLVVANGAQIPIEGYGNLAVEFDNGTDTISLELIDVAHVPFLSYHLFSLRSVVKRGYTYVGDSKGITLKLKSG-ATFLVPEVGNLYW 378
FDT A+ H S D M N+R +V V G P+EG G + +EF + ++ L++V + P L +L S + K G+ +V + + + K G F G LY+
Sbjct: 282 FDTAATSHFSCDKDSMLNYRPVKGAEVSVAIGGVTCPVEGTGEVELEFYKNGECETITLLNVLYSPKLKQNLISGSKIDKAGHNFVCNKNILNVYHKDGHKLFYAKRQGGLYY 394
BLAST of mRNA_F-serratus_M_contig626.17101.1 vs. uniprot
Match: A0A1M2V6B5_TRAPU (Copia protein n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V6B5_TRAPU) HSP 1 Score: 55.5 bits (132), Expect = 9.050e-6 Identity = 54/169 (31.95%), Postives = 73/169 (43.20%), Query Frame = 1
Query: 7 ETALMA--EGAYQNFCFDTGASGHMSPDSTGMTNFRQ-CNKVLVVANGAQIPIEGYGNLAVEFDNGTDTISLELIDVAHVPFLSYHLFSLRSVVK--RGYTYVGDSKGITLKLKSGATFLV-PEVGN-LYWSRGLRKKDEPDLACAVLTPGAMPTTGVDINTYHRTTGH 492
+TA A + A + F FD+GAS H+SP + + NG+ I G G + + G I L HVP S L S+R++ GY DSKG+TL+ +SGA F VG LY G P + L PT + T+HR GH
Sbjct: 429 DTAYSAGPDAAVEPFLFDSGASTHLSPVRGDFFELVPIAPRGIRGVNGSVIYATGIGKIRLSLGRGKHLI---LDHALHVPAASVRLISVRALCDGPHGYIVGFDSKGVTLRHRSGAAFFTGTRVGRGLYALSG-----SPPAVDSALAVSLAPT----LETWHRRLGH 585
BLAST of mRNA_F-serratus_M_contig626.17101.1 vs. uniprot
Match: A0A2P6V0Z3_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0Z3_9CHLO) HSP 1 Score: 55.5 bits (132), Expect = 9.150e-6 Identity = 47/159 (29.56%), Postives = 68/159 (42.77%), Query Frame = 1
Query: 43 FCFDTGASGHMSPDSTGMTNFRQC--NKVLVVANGAQIPIEGYGNLAVEFDNGTDTISLELIDVAHVPFLSYHLFSLRSVVKRGYTYVGDSKGITLKLKSGATFLVPEVGN-LYWSRGLRKKDEPDLACAVLTPGAMPTTGVDINT------YHRTTGH 492
F DTGAS HM+P + +TN R N + NGAQ G++ +E G + DV ++P + LFS+ ++GYT+ + G T+ S P N +Y+ G T GA PTT T +HR+ GH
Sbjct: 337 FVLDTGASRHMTPLKSALTNLRPPPDNLTVTFGNGAQAEPTAVGDIHLELAPGRIAT---ITDVLYLPTAAESLFSISYAAQKGYTFSFGADGCTIYRHSTTVATAPATANNIYYLEGRLAP----------TSGA-PTTAYAARTVETPHLWHRSLGH 481
BLAST of mRNA_F-serratus_M_contig626.17101.1 vs. uniprot
Match: A0A2P6UZ08_9CHLO (Gag-Pol poly (Fragment) n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UZ08_9CHLO) HSP 1 Score: 55.5 bits (132), Expect = 9.260e-6 Identity = 43/153 (28.10%), Postives = 64/153 (41.83%), Query Frame = 1
Query: 43 FCFDTGASGHMSPDSTGMTNFRQC--NKVLVVANGAQIPIEGYGNLAVEFDNGTDTISLELIDVAHVPFLSYHLFSLRSVVKRGYTYVGDSKGITLKLKSGATFLVPEVGN-LYWSRGLRKKDEPDLACAVLTPGAMPTTGVDINTYHRTTGH 492
F DTGAS HM+P + +TN R N + NGAQ G++ +E G + DV ++P + LFS+ ++GYT+ + G T+ S P N +Y+ G D T T + +HR GH
Sbjct: 285 FVLDTGASRHMTPLKSALTNLRPPPDNLTVTFGNGAQAEPTAVGDIHLELAPGRIAT---ITDVLYLPTAAESLFSVSYAAQKGYTFSFGADGCTIYRHSTTVATAPATANNIYYLEG-----RLDPTSGAPTTAYAARTAETPHLWHRRLGH 429
BLAST of mRNA_F-serratus_M_contig626.17101.1 vs. uniprot
Match: A0A2P6V117_9CHLO (Gag-Pol poly n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V117_9CHLO) HSP 1 Score: 55.1 bits (131), Expect = 1.250e-5 Identity = 47/159 (29.56%), Postives = 68/159 (42.77%), Query Frame = 1
Query: 43 FCFDTGASGHMSPDSTGMTNFRQC--NKVLVVANGAQIPIEGYGNLAVEFDNGTDTISLELIDVAHVPFLSYHLFSLRSVVKRGYTYVGDSKGITLKLKSGATFLVPEVGN-LYWSRGLRKKDEPDLACAVLTPGAMPTTGVDINT------YHRTTGH 492
F DTGAS HM+P + +TN R N + NGAQ G++ +E G + DV ++P + LFS+ ++GYT+ + G T+ S P N +Y+ G T GA PTT T +HR+ GH
Sbjct: 213 FVLDTGASRHMTPLKSALTNLRPPPDNLTVTFGNGAQAEPTAVGDIHLELAPGRIAT---ITDVLYLPTAAESLFSVSYAAQKGYTFSFGADGCTIYRHSTTVATAPATANNIYYLEGRLAP----------TSGA-PTTAYAARTVETPHLWHRSLGH 357
BLAST of mRNA_F-serratus_M_contig626.17101.1 vs. uniprot
Match: A0A2P6UYW3_9CHLO (Retrotransposon with Ribonuclease H-like superfamily and integrase domain n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYW3_9CHLO) HSP 1 Score: 54.3 bits (129), Expect = 2.160e-5 Identity = 36/118 (30.51%), Postives = 55/118 (46.61%), Query Frame = 1
Query: 43 FCFDTGASGHMSPDSTGMTNFRQC--NKVLVVANGAQIPIEGYGNLAVEFDNGTDTISLELIDVAHVPFLSYHLFSLRSVVKRGYTYVGDSKGITLKLKSGATFLVPEVGN-LYWSRG 387
F DTGAS HM+P + +TN R N + NGAQ G++ +E G + DV ++P + LFS+ ++GYT+ + G T+ S P N +Y+ G
Sbjct: 277 FVLDTGASRHMTPLKSALTNLRPPPDNLTVTFGNGAQAEPTAVGDIHLELAPGRIAT---ITDVLYLPTAAESLFSVSYAAQKGYTFSFGADGCTIYRHSTTVATAPATANNIYYLEG 391
BLAST of mRNA_F-serratus_M_contig626.17101.1 vs. uniprot
Match: A0A2P6V0X0_9CHLO (Gag-Pol poly n=3 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0X0_9CHLO) HSP 1 Score: 54.3 bits (129), Expect = 2.180e-5 Identity = 37/118 (31.36%), Postives = 57/118 (48.31%), Query Frame = 1
Query: 43 FCFDTGASGHMSPDSTGMTNFRQC--NKVLVVANGAQIPIEGYGNLAVEFDNGTDTISLELIDVAHVPFLSYHLFSLRSVVKRGYTYVGDSKGITLKLKSGATFLVPEVGN-LYWSRG 387
F DTGAS HM+P + +TN R N + NGAQ G++ +E D I+ + DV ++P + LFS+ ++GYT+ + G T+ S P N +Y+ G
Sbjct: 386 FVLDTGASRHMTPLKSALTNLRPPPDNLTVTFGNGAQAEPTAVGDIHLEL--APDRIAT-ITDVLYLPTAAESLFSVSYAAQKGYTFSFGADGCTIYRHSTTVATAPATANNIYYLEG 500
BLAST of mRNA_F-serratus_M_contig626.17101.1 vs. uniprot
Match: A0A2P6V0G0_9CHLO (Gag-Pol poly n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0G0_9CHLO) HSP 1 Score: 54.3 bits (129), Expect = 2.230e-5 Identity = 36/118 (30.51%), Postives = 55/118 (46.61%), Query Frame = 1
Query: 43 FCFDTGASGHMSPDSTGMTNFRQC--NKVLVVANGAQIPIEGYGNLAVEFDNGTDTISLELIDVAHVPFLSYHLFSLRSVVKRGYTYVGDSKGITLKLKSGATFLVPEVGN-LYWSRG 387
F DTGAS HM+P + +TN R N + NGAQ G++ +E G + DV ++P + LFS+ ++GYT+ + G T+ S P N +Y+ G
Sbjct: 385 FVLDTGASRHMTPLKSALTNLRPPPDNLTVTFGNGAQAEPTAVGDIHLELAPGRIAT---ITDVLYLPTAAESLFSVSYAAQKGYTFSFGADGCTIYRHSTTVATAPATANNIYYLEG 499 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig626.17101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig626.17101.1 >prot_F-serratus_M_contig626.17101.1 ID=prot_F-serratus_M_contig626.17101.1|Name=mRNA_F-serratus_M_contig626.17101.1|organism=Fucus serratus male|type=polypeptide|length=174bp MDETALMAEGAYQNFCFDTGASGHMSPDSTGMTNFRQCNKVLVVANGAQIback to top mRNA from alignment at F-serratus_M_contig626:236902..237423+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig626.17101.1 ID=mRNA_F-serratus_M_contig626.17101.1|Name=mRNA_F-serratus_M_contig626.17101.1|organism=Fucus serratus male|type=mRNA|length=522bp|location=Sequence derived from alignment at F-serratus_M_contig626:236902..237423+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig626:236902..237423+ >mRNA_F-serratus_M_contig626.17101.1 ID=mRNA_F-serratus_M_contig626.17101.1|Name=mRNA_F-serratus_M_contig626.17101.1|organism=Fucus serratus male|type=CDS|length=1044bp|location=Sequence derived from alignment at F-serratus_M_contig626:236902..237423+ (Fucus serratus male)back to top |