mRNA_F-serratus_M_contig626.17099.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig626.17099.1
Unique NamemRNA_F-serratus_M_contig626.17099.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig626.17099.1 vs. uniprot
Match: Q2PQH1_FUCVE (Photosystem I assembly protein Ycf4 n=3 Tax=Fucaceae TaxID=3010 RepID=Q2PQH1_FUCVE)

HSP 1 Score: 186 bits (473), Expect = 2.000e-58
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 1 
Query:    1 NNILFFIESKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNWKILLVYQFKNLKSIKLTIQDGINPKRI 288
            NNILFFI+SKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKN KILLVYQFKNLKSIKLTIQDGINPKRI
Sbjct:   48 NNILFFIDSKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNRKILLVYQFKNLKSIKLTIQDGINPKRI 143
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BLAST of mRNA_F-serratus_M_contig626.17099.1 vs. uniprot
Match: A0A344PFE2_9PHAE (Photosystem I assembly protein Ycf4 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PFE2_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.650e-49
Identity = 78/95 (82.11%), Postives = 87/95 (91.58%), Query Frame = 1 
Query:    4 NILFFIESKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNWKILLVYQFKNLKSIKLTIQDGINPKRI 288
            N LFFI S +L FLPQGLIMTFYGV+AISLS+YISLT+FWDVGSGYNEFDK+N+L+RIVR GFPGKN +ILLVY FKN+KSIKL IQDGINPKRI
Sbjct:   45 NFLFFINSNDLAFLPQGLIMTFYGVVAISLSIYISLTVFWDVGSGYNEFDKQNELIRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRI 139
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BLAST of mRNA_F-serratus_M_contig626.17099.1 vs. uniprot
Match: A0A6G6D7G8_ECTSI (Photosystem I assembly protein Ycf4 n=32 Tax=Phaeophyceae TaxID=2870 RepID=A0A6G6D7G8_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 4.700e-49
Identity = 77/95 (81.05%), Postives = 87/95 (91.58%), Query Frame = 1 
Query:    4 NILFFIESKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNWKILLVYQFKNLKSIKLTIQDGINPKRI 288
            N+LFFI S EL+FLPQGL+MTFYGV+ ISLS+YI LTIFWDVGSGYNEFDK+N+L+RIVR GFPGKN +ILLVY FKN+KSIKL IQDGINPKRI
Sbjct:   45 NLLFFINSTELSFLPQGLVMTFYGVVGISLSIYIGLTIFWDVGSGYNEFDKQNELIRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRI 139
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BLAST of mRNA_F-serratus_M_contig626.17099.1 vs. uniprot
Match: A0A1L2F1V9_9PHAE (Photosystem I assembly protein Ycf4 n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1V9_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 1.070e-48
Identity = 79/95 (83.16%), Postives = 87/95 (91.58%), Query Frame = 1 
Query:    4 NILFFIESKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNWKILLVYQFKNLKSIKLTIQDGINPKRI 288
            N+L FI S++L+FLPQG+IMTFYGVIAI LS YI LTIFWDVGSGYNEFDKEN+LVRIVR GFPGKN KILLVYQF+NLKSIKL IQDG+NPKRI
Sbjct:   49 NLLGFINSEQLSFLPQGVIMTFYGVIAIGLSFYIGLTIFWDVGSGYNEFDKENELVRIVRRGFPGKNRKILLVYQFRNLKSIKLNIQDGLNPKRI 143
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BLAST of mRNA_F-serratus_M_contig626.17099.1 vs. uniprot
Match: A0A8F0F7W7_AKKLU (Photosystem I assembly protein Ycf4 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F7W7_AKKLU)

HSP 1 Score: 161 bits (407), Expect = 2.150e-48
Identity = 75/95 (78.95%), Postives = 88/95 (92.63%), Query Frame = 1 
Query:    4 NILFFIESKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNWKILLVYQFKNLKSIKLTIQDGINPKRI 288
            N+LFFI S EL+FLPQGL+MTFYGV+AISLS+YI+LTIFWD+GSGYNEFDK ++L+RIVR GFPGKN +ILLVY FKN+KSIKL IQDGINPKR+
Sbjct:   49 NLLFFINSTELSFLPQGLVMTFYGVVAISLSIYIALTIFWDIGSGYNEFDKRDELIRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRV 143
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BLAST of mRNA_F-serratus_M_contig626.17099.1 vs. uniprot
Match: A0A6B7IL95_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7IL95_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 7.440e-48
Identity = 78/95 (82.11%), Postives = 87/95 (91.58%), Query Frame = 1 
Query:    4 NILFFIESKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNWKILLVYQFKNLKSIKLTIQDGINPKRI 288
            N++FFI S EL FLPQGL+MTFYGV+AISLSLYI LTIFWDVGSGYNEFDK+N+L+RIVR GFPGKN +ILLVY FKN+KSIKL IQDGINPKRI
Sbjct:  180 NLIFFINSMELAFLPQGLVMTFYGVVAISLSLYIGLTIFWDVGSGYNEFDKQNELIRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRI 274
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BLAST of mRNA_F-serratus_M_contig626.17099.1 vs. uniprot
Match: A0A8F0F7K4_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7K4_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 1.600e-45
Identity = 73/95 (76.84%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    4 NILFFIESKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNWKILLVYQFKNLKSIKLTIQDGINPKRI 288
            N L FI S EL+FLPQGL+MTFYGV+A+SLS+YI LTIFWD+GSGYNEFDK+ +LVRIVR GFPGKN +ILLVY F N+KSIKL IQDGINPKR+
Sbjct:   48 NFLPFINSFELSFLPQGLVMTFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQTELVRIVRKGFPGKNRQILLVYSFNNIKSIKLNIQDGINPKRV 142
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BLAST of mRNA_F-serratus_M_contig626.17099.1 vs. uniprot
Match: A0A2I4Q2G9_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2G9_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 7.950e-44
Identity = 71/95 (74.74%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    4 NILFFIESKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNWKILLVYQFKNLKSIKLTIQDGINPKRI 288
            N L F+ + +L+FLPQGLIMTFYG+I +SLSL+ISLTIFWDVGSGYNEF+K+ +L+RIVR GFPGKN KILLVY F N+KSIKL IQ+GINPKRI
Sbjct:   50 NFLPFVNTADLSFLPQGLIMTFYGIIGLSLSLFISLTIFWDVGSGYNEFNKQTELIRIVRRGFPGKNRKILLVYPFNNIKSIKLNIQEGINPKRI 144
[Close]
BLAST of mRNA_F-serratus_M_contig626.17099.1 vs. uniprot
Match: A0A8E6D5U2_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D5U2_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 6.470e-43
Identity = 71/95 (74.74%), Postives = 82/95 (86.32%), Query Frame = 1 
Query:    4 NILFFIESKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNWKILLVYQFKNLKSIKLTIQDGINPKRI 288
            N L F  S EL F+PQGL+MTFYGV+AISLS+YI+LTI WDVG GYNEFDK+ +L+RIVR GFPGKN +ILLVY F+N+KSIKL IQDGINPKRI
Sbjct:   50 NFLPFGNSIELNFVPQGLVMTFYGVVAISLSIYIALTILWDVGGGYNEFDKDKELIRIVRRGFPGKNRQILLVYSFQNIKSIKLNIQDGINPKRI 144
[Close]
BLAST of mRNA_F-serratus_M_contig626.17099.1 vs. uniprot
Match: B7T212_VAULI (Photosystem I assembly protein Ycf4 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T212_VAULI)

HSP 1 Score: 146 bits (368), Expect = 1.740e-42
Identity = 68/95 (71.58%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:    4 NILFFIESKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNWKILLVYQFKNLKSIKLTIQDGINPKRI 288
            N+L+F    EL F+PQG++MTFYGV+AISLS YI+LTI WDVG+GYNEF+K ++LVRI+R GFPGKN +ILLVY F N+KSIKLTIQDGINPKR+
Sbjct:   48 NLLYFANPTELIFIPQGIVMTFYGVVAISLSFYITLTIIWDVGAGYNEFNKVDELVRIMRKGFPGKNRQILLVYPFNNIKSIKLTIQDGINPKRL 142
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig626.17099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q2PQH1_FUCVE2.000e-5897.92Photosystem I assembly protein Ycf4 n=3 Tax=Fucace... [more]
A0A344PFE2_9PHAE1.650e-4982.11Photosystem I assembly protein Ycf4 n=4 Tax=Scytos... [more]
A0A6G6D7G8_ECTSI4.700e-4981.05Photosystem I assembly protein Ycf4 n=32 Tax=Phaeo... [more]
A0A1L2F1V9_9PHAE1.070e-4883.16Photosystem I assembly protein Ycf4 n=13 Tax=Sarga... [more]
A0A8F0F7W7_AKKLU2.150e-4878.95Photosystem I assembly protein Ycf4 n=1 Tax=Akkesi... [more]
A0A6B7IL95_9PHAE7.440e-4882.11Photosystem I assembly protein Ycf4 n=1 Tax=Clados... [more]
A0A8F0F7K4_9PHAE1.600e-4576.84Photosystem I assembly protein Ycf4 n=1 Tax=Protoh... [more]
A0A2I4Q2G9_9PHAE7.950e-4474.74Photosystem I assembly protein Ycf4 n=1 Tax=Dictyo... [more]
A0A8E6D5U2_9PHAE6.470e-4374.74Photosystem I assembly protein Ycf4 n=1 Tax=Ishige... [more]
B7T212_VAULI1.740e-4271.58Photosystem I assembly protein Ycf4 n=1 Tax=Vauche... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig626contigF-serratus_M_contig626:217284..217598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue8e-38
Seed eggNOG ortholog2880.D1J7C6
Preferred nameycf4
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0015979,GO:0016020,GO:0016043,GO:0019684,GO:0022607,GO:0031976,GO:0031984,GO:0034357,GO:0034622,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048564,GO:0051082,GO:0055035,GO:0065003,GO:0071840
EggNOG free text desc.photosynthesis
EggNOG OGs2CNI2@1,2QWGG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931936.2496126-CDS-F-serratus_M_contig626:217283..2175981622931936.2496126-CDS-F-serratus_M_contig626:217283..217598Fucus serratus maleCDSF-serratus_M_contig626 217284..217598 +
1690964065.3480146-CDS-F-serratus_M_contig626:217283..2175981690964065.3480146-CDS-F-serratus_M_contig626:217283..217598Fucus serratus maleCDSF-serratus_M_contig626 217284..217598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig626.17099.1prot_F-serratus_M_contig626.17099.1Fucus serratus malepolypeptideF-serratus_M_contig626 217284..217598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig626.17099.1

>prot_F-serratus_M_contig626.17099.1 ID=prot_F-serratus_M_contig626.17099.1|Name=mRNA_F-serratus_M_contig626.17099.1|organism=Fucus serratus male|type=polypeptide|length=105bp
NNILFFIESKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEF
DKENQLVRIVRLGFPGKNWKILLVYQFKNLKSIKLTIQDGINPKRITSST
SINI*
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mRNA from alignment at F-serratus_M_contig626:217284..217598+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig626.17099.1 ID=mRNA_F-serratus_M_contig626.17099.1|Name=mRNA_F-serratus_M_contig626.17099.1|organism=Fucus serratus male|type=mRNA|length=315bp|location=Sequence derived from alignment at F-serratus_M_contig626:217284..217598+ (Fucus serratus male)
AATAATATACTATTTTTTATTGAATCTAAAGAATTAACTTTTTTACCTCA
AGGTCTTATTATGACCTTTTATGGAGTTATTGCTATAAGCTTAAGTTTAT
ATATATCTCTTACAATTTTTTGGGATGTAGGAAGCGGCTATAATGAATTT
GATAAAGAAAATCAGTTGGTTCGTATTGTAAGACTAGGTTTTCCAGGAAA
AAATTGGAAAATACTATTAGTTTATCAATTTAAAAATCTTAAAAGTATTA
AATTAACTATTCAAGATGGTATTAATCCTAAGCGTATAACTAGTAGTACT
AGTATCAATATTTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig626:217284..217598+

>mRNA_F-serratus_M_contig626.17099.1 ID=mRNA_F-serratus_M_contig626.17099.1|Name=mRNA_F-serratus_M_contig626.17099.1|organism=Fucus serratus male|type=CDS|length=630bp|location=Sequence derived from alignment at F-serratus_M_contig626:217284..217598+ (Fucus serratus male)
AATAATATACTATTTTTTATTGAATCTAAAGAATTAACTTTTTTACCTCA
AGGTCTTATTATGACCTTTTATGGAGTTATTGCTATAAGCTTAAGTTTAT
ATATATCTCTTACAATTTTTTGGGATGTAGGAAGCGGCTATAATGAATTT
GATAAAGAAAATCAGTTGGTTCGTATTGTAAGACTAGGTTTTCCAGGAAA
AAATTGGAAAATACTATTAGTTTATCAATTTAAAAATCTTAAAAGTATTA
AATTAACTATTCAAGATGGTATTAATCCTAAGCGTATAACTAGTAGTACT
AGTATCAATATTTAAAATAATATACTATTTTTTATTGAATCTAAAGAATT
AACTTTTTTACCTCAAGGTCTTATTATGACCTTTTATGGAGTTATTGCTA
TAAGCTTAAGTTTATATATATCTCTTACAATTTTTTGGGATGTAGGAAGC
GGCTATAATGAATTTGATAAAGAAAATCAGTTGGTTCGTATTGTAAGACT
AGGTTTTCCAGGAAAAAATTGGAAAATACTATTAGTTTATCAATTTAAAA
ATCTTAAAAGTATTAAATTAACTATTCAAGATGGTATTAATCCTAAGCGT
ATAACTAGTAGTACTAGTATCAATATTTAA
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