mRNA_F-serratus_M_contig6255.17097.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6255.17097.1
Unique NamemRNA_F-serratus_M_contig6255.17097.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6255.17097.1 vs. uniprot
Match: A0A7I4YAB1_HAECO (NTR domain-containing protein n=1 Tax=Haemonchus contortus TaxID=6289 RepID=A0A7I4YAB1_HAECO)

HSP 1 Score: 48.5 bits (114), Expect = 5.690e-5
Identity = 29/91 (31.87%), Postives = 49/91 (53.85%), Query Frame = 1 
Query:    1 NKDGGGNGIINYTVDTITLYKGESSIVGDSQELSVLTGRKSDACGVKLEIGEQYLLGLNYNGAPFNSEYDDDLSVGLCGLYAAWSSVDEKE 273
            N+D  G   + Y V+ I +Y+  +++    +E+S  T   S ACG++L++G++YLLG + +       Y       LCGL   WS+V  K+
Sbjct:   47 NEDSDGLEDVEYIVEHICVYRKPANVKILPKEIS--TASNSAACGIELDVGQEYLLGGSADEQGVLHSY-------LCGLVEEWSTVSAKD 128
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6255.17097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7I4YAB1_HAECO5.690e-531.87NTR domain-containing protein n=1 Tax=Haemonchus c... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6255contigF-serratus_M_contig6255:32509..32787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931935.8866518-CDS-F-serratus_M_contig6255:32508..327871622931935.8866518-CDS-F-serratus_M_contig6255:32508..32787Fucus serratus maleCDSF-serratus_M_contig6255 32509..32787 -
1690964065.181477-CDS-F-serratus_M_contig6255:32508..327871690964065.181477-CDS-F-serratus_M_contig6255:32508..32787Fucus serratus maleCDSF-serratus_M_contig6255 32509..32787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6255.17097.1prot_F-serratus_M_contig6255.17097.1Fucus serratus malepolypeptideF-serratus_M_contig6255 32509..32787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6255.17097.1

>prot_F-serratus_M_contig6255.17097.1 ID=prot_F-serratus_M_contig6255.17097.1|Name=mRNA_F-serratus_M_contig6255.17097.1|organism=Fucus serratus male|type=polypeptide|length=93bp
NKDGGGNGIINYTVDTITLYKGESSIVGDSQELSVLTGRKSDACGVKLEI
GEQYLLGLNYNGAPFNSEYDDDLSVGLCGLYAAWSSVDEKELD
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mRNA from alignment at F-serratus_M_contig6255:32509..32787-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6255.17097.1 ID=mRNA_F-serratus_M_contig6255.17097.1|Name=mRNA_F-serratus_M_contig6255.17097.1|organism=Fucus serratus male|type=mRNA|length=279bp|location=Sequence derived from alignment at F-serratus_M_contig6255:32509..32787- (Fucus serratus male)
AACAAGGACGGAGGTGGGAACGGCATCATCAACTATACCGTTGACACCAT
TACTCTCTACAAGGGTGAATCCAGTATCGTCGGCGATTCGCAGGAGCTCA
GCGTCCTGACCGGGAGGAAAAGCGACGCCTGCGGGGTGAAGCTTGAAATC
GGAGAGCAGTATCTCTTGGGTCTCAACTACAACGGGGCACCGTTCAACTC
AGAATATGACGATGATCTTTCTGTGGGCCTGTGCGGTCTATACGCGGCGT
GGAGCTCGGTCGACGAGAAGGAGCTGGAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig6255:32509..32787-

>mRNA_F-serratus_M_contig6255.17097.1 ID=mRNA_F-serratus_M_contig6255.17097.1|Name=mRNA_F-serratus_M_contig6255.17097.1|organism=Fucus serratus male|type=CDS|length=558bp|location=Sequence derived from alignment at F-serratus_M_contig6255:32509..32787- (Fucus serratus male)
AACAAGGACGGAGGTGGGAACGGCATCATCAACTATACCGTTGACACCAT
TACTCTCTACAAGGGTGAATCCAGTATCGTCGGCGATTCGCAGGAGCTCA
GCGTCCTGACCGGGAGGAAAAGCGACGCCTGCGGGGTGAAGCTTGAAATC
GGAGAGCAGTATCTCTTGGGTCTCAACTACAACGGGGCACCGTTCAACTC
AGAATATGACGATGATCTTTCTGTGGGCCTGTGCGGTCTATACGCGGCGT
GGAGCTCGGTCGACGAGAAGGAGCTGGATAACAAGGACGGAGGTGGGAAC
GGCATCATCAACTATACCGTTGACACCATTACTCTCTACAAGGGTGAATC
CAGTATCGTCGGCGATTCGCAGGAGCTCAGCGTCCTGACCGGGAGGAAAA
GCGACGCCTGCGGGGTGAAGCTTGAAATCGGAGAGCAGTATCTCTTGGGT
CTCAACTACAACGGGGCACCGTTCAACTCAGAATATGACGATGATCTTTC
TGTGGGCCTGTGCGGTCTATACGCGGCGTGGAGCTCGGTCGACGAGAAGG
AGCTGGAT
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