mRNA_F-serratus_M_contig624.17086.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig624.17086.1
Unique NamemRNA_F-serratus_M_contig624.17086.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig624.17086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig624contigF-serratus_M_contig624:244815..250372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size495
Cds size468
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig624.17086.1prot_F-serratus_M_contig624.17086.1Fucus serratus malepolypeptideF-serratus_M_contig624 244841..250372 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931931.9997046-UTR-F-serratus_M_contig624:244814..2448401622931931.9997046-UTR-F-serratus_M_contig624:244814..244840Fucus serratus maleUTRF-serratus_M_contig624 244815..244840 +
1690964063.4481595-UTR-F-serratus_M_contig624:244814..2448401690964063.4481595-UTR-F-serratus_M_contig624:244814..244840Fucus serratus maleUTRF-serratus_M_contig624 244815..244840 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931932.0223858-CDS-F-serratus_M_contig624:244840..2450071622931932.0223858-CDS-F-serratus_M_contig624:244840..245007Fucus serratus maleCDSF-serratus_M_contig624 244841..245007 +
1690964063.4587336-CDS-F-serratus_M_contig624:244840..2450071690964063.4587336-CDS-F-serratus_M_contig624:244840..245007Fucus serratus maleCDSF-serratus_M_contig624 244841..245007 +
1622931932.0436893-CDS-F-serratus_M_contig624:250071..2503721622931932.0436893-CDS-F-serratus_M_contig624:250071..250372Fucus serratus maleCDSF-serratus_M_contig624 250072..250372 +
1690964063.4687476-CDS-F-serratus_M_contig624:250071..2503721690964063.4687476-CDS-F-serratus_M_contig624:250071..250372Fucus serratus maleCDSF-serratus_M_contig624 250072..250372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig624.17086.1

>prot_F-serratus_M_contig624.17086.1 ID=prot_F-serratus_M_contig624.17086.1|Name=mRNA_F-serratus_M_contig624.17086.1|organism=Fucus serratus male|type=polypeptide|length=156bp
MATTLLWLGAALPITTYSFDGRVTSVAAFVGDAGPFTGCAWRVLGSSSKA
PVTTIRKRSPPSPTELALPLAFQGASGGFGVGRGRGRKRGRGTTLPCQAG
ATRSTDPTHSATTLLTPGETVRSGTAAAAAETPPPSQPLEETTAAPSTQV
SSQVPS
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mRNA from alignment at F-serratus_M_contig624:244815..250372+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig624.17086.1 ID=mRNA_F-serratus_M_contig624.17086.1|Name=mRNA_F-serratus_M_contig624.17086.1|organism=Fucus serratus male|type=mRNA|length=5558bp|location=Sequence derived from alignment at F-serratus_M_contig624:244815..250372+ (Fucus serratus male)
ATTATAGTCCCGTCGGTCACAGCGCTATGGCTACAACCCTGCTGTGGCTT
GGTGCAGCATTACCCATCACCACCTACAGTTTTGATGGGCGTGTGACCAG
TGTTGCTGCTTTTGTGGGCGACGCTGGTCCTTTTACAGGGTGCGCCTGGA
GGGTGCTGGGTTCCTCCTCGAAAGCACCGGTAACTACCATCAGGTGCAAG
ACATTTTGGAGTCAAGTAGTAATCAGTACAGAGTACCTGGTGCGTTCTGT
ACAGCTGTGCAAGTCTGCAAGTCATAAATCATAAGCCATAAGACAGCAGC
AGTTCAGCTGCATGGACAAAATTACCTTTGCGGCAGCTTTGACTATCATA
GCTCCGTTCGCTTCTCGCGCTACACTACAAGTACTACTGTCTTAGAGTAC
ACTGTACCAAACAGTGCCACTTTTATAAGGTATCATCTGTACTTCAGCTC
TAATACAGCAGTACTCTGGTACTGACTTTATACTACTATATGTATAGTCA
CACATGTATAGCAAGAGTATGGATCAACCGGGTAAAGTTGCCAATCCTGG
TCGTGTGGTCAGCTCAACAGGGATAATGAAAATTCCCCTGTCCCCGTTCG
CGCCTGAGAATTTGATCTCGCGAGACGGTTTCGACAGTCCCGTCCCGCGT
CAGCCTGCTCACCTCCATACTGAGGCTAAATCTGGTCGTTACATCGGGAT
CCTTCCCGAGTTCCGAGGCGGCGTCCAATTTTATTTCGACTATACTAATA
AACAAAAGTTGCAAGTAGGAGCTCTCTTTGATAAGGTTAACTATTACACC
ACAGGGTAAAAGTCAATTGACAATTACCACTCGGTAATCAGTCCTTATAA
CACTCTCCGCCCACAGAATTTGACTATCCGGTGATCAAGCGGACTAGTTA
ATTCGATAAGGCTTTGAGTGTAGGAGCATAATCGCTTTCTTTTTCATACG
GAGAGCAAAGTACCGTATACATATTTTCATCTCCAACCGGTATTCTGCCC
AGGAATTCGGTGAGGTCAAGAAGCTAGGTCAGCGGGATTCGAACCCGGGT
CCTACCGTCGACGCCAGTTTGATAAGGTTAACTATTACACCACAGGGTAA
AAGTCAATTGACAATTACCACTCGGTAATCAGTCCTTATAACATCTCTCT
GTGAAAGTAGCACGTGTTGAGCATTTCAAAGCGAAAATCTGAGCGCTTTC
AAACCCTTGCAACATGTATGATTAATAGTACTTCTCTTAGATGAAATTCC
ACGAAGCACTTGTGCATTTCAGAGTGAAAATATGTGCACTTTCAAACCCT
TGGGACTTACAGTCCTTCTCTGCTGTAGACTGTAGATGAAATTTCAGGGA
ACATTTGGCACCTCGAAAGGTTCAAGTGAGTTCGTCAATTCCACGATGGC
ATGCGAGCATGCGTGCGGCTTGACGACAGGGTGTGCTCGAGGTGGTTCGC
TGTGGAACAAGGCCTTCGTCAAGGGTGCGTACTCGCACCCCTCCTGTTCA
ATATCTTCTTCGCGGCGGTTATAAACTCGGCCTCCACGCATTTCAAGGCG
GACAAAGGCATCATGGACGCTTTGGGACACCTGAGGGAGAAAAGGGGGGC
GGGGGGAAGCAACTGGCGGAGAATCAGTCCTCGCGACGCCGCTTTGGGGT
ATGCTTTACGCTGACGATGCCGGGGTCGTCTCGCAATCACCCGAGCAGTT
GAGGAAGATGATGGAGGTAATCGTGGTCATGTGCGCGGCGTTTGGCCTCA
CCGTATCGGAGGCCAAGACTGAGATCGTGTGTTTACGCGCGGAGGGGATG
CTGGAGTCCACCGCCACATTCAGCGTAGAGGCAGCGGGCCAGGTGTACAA
CCAGACGAGCGAGTTTTTATACCTCGGGGGAAACGTCAATCAAAATGCCG
ATCTGTCCATCGAGGTCGACCGGCGCGTACGCAACGCATGGTGCAGCTTC
CGGAAGGACACCCTCGAACTGTACGACCGACCGAGCGCTCCCCTCGAGCT
CAAAATCCGTATGCTAAGAGCCGAGGTACTCGAGACAATGTTGTACGGCT
ACGTCACGTGGAGCCCGCGCGCGTGCCACTACGACACGCTGCGCCGAGCC
CACCACAGATTCTTGACTTGCTGCATCGGTTGGCGAAAGCACAATCGCGC
CGACCACCCGATTTCCTATCTGGACACGCTTCCCAAGACGGGAAGTGAGA
CCATCGAGGCGACTTTACGCAGGAGGCGGATCTTGTTTGCGGGATTTGTG
GCGCTCATGAAGGACACGAGATAGCCGAAGTGCGTGATGTTCGTAGAAAT
GGTGGGGAGCGCGGGCTGTGTCTGGGGCCAGGAAAAAGAGTGGATGGGGT
GTTTCCTCGACGATCTCAGAGCTTTCGGCATCAACGCCGACCAGTGGACG
ATTGCAGCCCAGGACGAGGGGGGATGGCGCAGAACGGCAGAACAAGGGGC
GGAACGTTTCATGGCGAAATGGATCGCTGCAGAGAAAGCCAAAGCTGGAC
TACGGCAGCAAGCGGGCTCGTCCTGGTTCGCTCGCTCTTGTCGACTAGCC
ACAAGTGGCGCGAACTTGCATTCTCCGGGCATTTCGTTTGCAGATACCAT
GACGTTTTTCGCTGGTGTTACGTTTGTTTTGTTTTGCTTCGTTTTCCTCT
CTATGCTTTCGTTGAAGCCGCGGCCCTTTCGTTCAATCGTCCTTCGATAT
GCAGGCGTCCCGATAGCCACATGTGTTTATTTCTTCTAATTTTTCCCTTT
TTGTATATTTGGAGATGTCGCTTTTTCCGAGTATAAACCGGTCGACCCCG
GTAGCTCAGTAGGCACCTCGTAACCTTCTGACACGTTGGGACGTGAGTTC
GATCCCGGCAAACGGGATTTTTCTCACTAAAAACTAAAAAACCAAAATAA
AAATGCCCAACGGCTGGAGAACGATTAATTCATTAGTACACAAAATTCGA
CTTCACGGTCGACGGGGGAAAGGAATGGCTGAATCCTTCTCGCGACAAAA
ATCAAGGCACGCACCGCAGAAGGAAGGTGGATGAAAAATCCTGTGTGACC
TTCCTCCTGTCTGACCCCGGCTGGTACGTCCAACTTGATGTCCAGAATGG
ATGGGAAGAAAACACACAAAACACATATAGATGGATGGATAGAGAGATAA
ATAGATATAGGAAGTATATATATACAGTATATATATATATATTGTTACCA
TTTCCGCTTTCTCTTTGTATGGAGAGTACCTCGTACGTTCTTTCCTTCCG
GGTGGTGTTTTTTCTACCTTGTGACCACGGGCTGGATTTTTAACATCAGC
TTATCTGAGAATTCAATCAATCAAGCAACTATTAATATTGTATGGTCATC
ACATAGTCTATAGCAGAGTATGGATCAACCGTGTAAGGATGCCAATCCTG
CTCGTGGTCAGCTGAACAGGGAAAATGAATATTCCCCTGTCCCCGTGCGT
GCCTGAGAATTTGGTATCGCGAGACGGGTTTAGCCGTCCCGTCCCGCGTC
AGCCTGCTCATATCCATACTCAGGCTGAATCTAGTGCTTACTTACGGGAT
TCCTCCAGAGTTCCGCGGCGGCGCATATATTCATATTAAACCGCCATACG
CCATCGGGTCAGTCCCGAGGTTTATCGGGTCACGCAATTGCGTACCGATG
GCGTTCACTGCCGAGAGTCCGCCGGCACAGGGCCAGTAAACCTCAAGGTA
GTTCCGAACGAGTGCTGCCTTGACAGGTCGCCATAGACCAATTTATATTC
GCCTCTCTTTCCCACACCCACTATTGGTATGAAGTGGGCATGTTGAAAGT
ACCGGTGCTATATTACTTCGTTACTACTGTATTACAGTATATCGTACATA
CCGTAGTAATAAATCATCGCACCATTGGCGATTACCATAATAAGAACAAG
TAATAAAGATAGGTTGACAATCCCACTACAAAAATGTGTTTATAATTACC
AACAATGGTATTAATCATATACTGGTAGAAGGTTCTAGAGCTAGACTATG
TAGATTCTTTCTACGAGTACTTATGTAAAGTGGATCTACAAAACCCTTCC
TTATGCTAAGTCTTACCCCTATAAAACTAATATATGTACTAGTAACGATA
CCCTTCCTATCCCTTGCTCATGCTGTCACAAATGTAAGATATAGTGTGAA
CTTCAAACGCCACAAGCGCTACGGGTAAGTATGTACCTGGTACCGTATAG
TAATACTATTTAGGTCAATTTTCCAAAATGACCTCTATATCTATAACTTG
TAGACTTCCTTCATTGACACCCATCTGATCTTAGACCCAATTTAACAAGC
TGAGTTGTACCCTAGCTTATCGGGCTTTTTGTAATTGTCGTGTTTCGGTG
TCCCTGCATGGTTATTAATTTGATAGTAACGCCATGCAGAGGTCGTATTT
TTAGCCTATGACACAACAATTTTAGATACGTAGTCGAATGTCACTGTGGA
CTTATTGTAAACTGTAAATGTATTTTTTTATCTCTACCAATAACAGTACA
ATATTTTAACACTGCTTGTGGTGCTCTAGACTATACTATAAGCCCTTATT
GGATAAGGGTCGATGCACTAATATTACTGTATATAATTATAAATCTATTT
TATTGTGTAATAAAAATGTTTTTGTTTTGTTTCTGTCTGGTGTCCCTGCA
TGGCAATTAATGGAAGTGTACAGCAGTATAACGGCGGGTTTCTCCCCGGT
ATTACACTGTTGACCCCATGTTACTACCATACATCGGGGACCCCGATTAA
ATGCCATGAAGAGGTTTTGTATTTGCAGCCTAAGGTCCTACCTAAACATT
TTGACAGTGATCCCCCTGTGGGGGATGCTTAGAAGGTCCAGATGCGTTCA
TATTGTTCTTTAAACACCCATCTCTTCCCGAGATCCGAATTAGATGTGGC
TACAATATTGAAAGATAGTTCATGTGGCTGCTACAGCGATACTGGTATGA
GACTATTAAAATAATAGGAATGTTAGACTAATGATATTAATAGACGGACA
AATATAGCTCTAGACCATTGATACGGTAATTACGTCCCATCATTCCACCA
TTCCATCATTCCATGTATCATATCTGGATGCAAGTAATAATGCGCATAGC
TCTAGAGCTAGTGCTGTGTAAGCACAGACAAAACGGTTGCGTTGTTACCA
GGTAGCTAGCATCGCTGTCATAGCCATTATTTATACCGTGGAATCACGAC
TACGAGTTTTGCTGAGGAGAATAACAACACTACGTTCCGACGACACATCT
TGTTCAGGAAACGATCCCCACCATCGCCAACTGAGCTGGCACTGCCATTG
GCATTCCAGGGAGCCTCCGGGGGGTTCGGCGTGGGAAGGGGTAGAGGACG
AAAGCGGGGGCGTGGGACTACGCTGCCGTGCCAGGCCGGGGCGACCAGAT
CCACTGATCCGACCCACTCGGCTACCACCCTTCTCACTCCAGGAGAAACT
GTCCGAAGCGGTACCGCAGCTGCAGCTGCGGAAACACCGCCCCCGTCGCA
GCCGCTGGAGGAAACTACCGCGGCGCCATCCACGCAAGTATCATCGCAGG
TACCATCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig624:244815..250372+

>mRNA_F-serratus_M_contig624.17086.1 ID=mRNA_F-serratus_M_contig624.17086.1|Name=mRNA_F-serratus_M_contig624.17086.1|organism=Fucus serratus male|type=CDS|length=936bp|location=Sequence derived from alignment at F-serratus_M_contig624:244815..250372+ (Fucus serratus male)
ATGGCTACAACCCTGCTGTGGCTTGGTGCAGCATTACCCATCACCACCTA
CAGTTTTGATGGGCGTGTGACCAGTGTTGCTGCTTTTGTGGGCGACGCTG
GTCCTTTTACAGGGTGCGCCTGGAGGGTGCTGGGTTCCTCCTCGAAAGCA
CCGGTAACTACCATCAGATGGCTACAACCCTGCTGTGGCTTGGTGCAGCA
TTACCCATCACCACCTACAGTTTTGATGGGCGTGTGACCAGTGTTGCTGC
TTTTGTGGGCGACGCTGGTCCTTTTACAGGGTGCGCCTGGAGGGTGCTGG
GTTCCTCCTCGAAAGCACCGGTAACTACCATCAGGAAACGATCCCCACCA
TCGCCAACTGAGCTGGCACTGCCATTGGCATTCCAGGGAGCCTCCGGGGG
GTTCGGCGTGGGAAGGGGTAGAGGACGAAAGCGGGGGCGTGGGACTACGC
TGCCGTGCCAGGCCGGGGCGACCAGATCCACTGATCCGACCCACTCGGCT
ACCACCCTTCTCACTCCAGGAGAAACTGTCCGAAGCGGTACCGCAGCTGC
AGCTGCGGAAACACCGCCCCCGTCGCAGCCGCTGGAGGAAACTACCGCGG
CGCCATCCACGCAAGTATCATCGCAGGTACCATCAGAAACGATCCCCACC
ATCGCCAACTGAGCTGGCACTGCCATTGGCATTCCAGGGAGCCTCCGGGG
GGTTCGGCGTGGGAAGGGGTAGAGGACGAAAGCGGGGGCGTGGGACTACG
CTGCCGTGCCAGGCCGGGGCGACCAGATCCACTGATCCGACCCACTCGGC
TACCACCCTTCTCACTCCAGGAGAAACTGTCCGAAGCGGTACCGCAGCTG
CAGCTGCGGAAACACCGCCCCCGTCGCAGCCGCTGGAGGAAACTACCGCG
GCGCCATCCACGCAAGTATCATCGCAGGTACCATCA
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