mRNA_F-serratus_M_contig6235.17077.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6235.17077.1
Unique NamemRNA_F-serratus_M_contig6235.17077.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6235.17077.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.740e-22
Identity = 57/121 (47.11%), Postives = 72/121 (59.50%), Query Frame = 1 
Query:    1 GPSNITGCRFDGNNATDGGAIYTAAGYDRVVNSSFTRNFAGIIASTVKHLETVQGGALLHSGVLVALTGCTFEFNMAGEDGLAVMSLGIADNISDLSFRNNSFFCPSGKYGFTEDSELVEV 363
            G  N T C F GN+A DGGA+Y+AAGYD + +  F  N A              GGA LHSGVLV L   TF  N A + GLAV SLGIA NI+D +F +N+++C SG+YG+  +    EV
Sbjct:  449 GSVNATMCVFQGNSAVDGGAMYSAAGYDGIKDCRFEDNLA-----------VGSGGAYLHSGVLVELDRSTFVGNRARDAGLAVQSLGIAGNITDTTFESNTYYCSSGQYGYEYEIGEDEV 558
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BLAST of mRNA_F-serratus_M_contig6235.17077.1 vs. uniprot
Match: D7FPF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF6_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.320e-18
Identity = 52/121 (42.98%), Postives = 68/121 (56.20%), Query Frame = 1 
Query:    1 GPSNITGCRFDGNNATDGGAIYTAAGYDRVVNSSFTRNFAGIIASTVKHLETVQGGALLHSGVLVALTGCTFEFNMAGEDGLAVMSLGIADNISDLSFRNNSFFCPSGKYGFTEDSELVEV 363
            GP+N T C F+ N+A DGGAIY+AAGYD + +S F  N A               GA LHSG+LV+L   TF  N AG  GLAV SL          F +N+++C SG+YG+   ++  EV
Sbjct:  405 GPANTTTCVFERNSAEDGGAIYSAAGYDIISDSWFEDNIA-----------VGSRGAYLHSGLLVSLADTTFVGNRAGAAGLAVASLXXXXXXXXXXFESNTYYCQSGQYGYDISADEDEV 514
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BLAST of mRNA_F-serratus_M_contig6235.17077.1 vs. uniprot
Match: D7FUB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB6_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.240e-16
Identity = 50/132 (37.88%), Postives = 65/132 (49.24%), Query Frame = 1 
Query:    1 GPSNITGCRFDGNNATDGGAIYTAAGYDRVVNSSFTRNFAGIIASTVKHLETVQGGALLHSGVLVALTGCTFEFNMAGEDGLAVMSLGIADNISDLSFRNNSFFCPSGKYGFTE---DSELVEVRPCPTRCS 387
            GP N T C F+ N+A DGGA Y+AAGYD V + SF  NFA +            GGALLHSGVLV +                     IA+N +D++F  N+F+C  G+YG      D E+ +       CS
Sbjct:  222 GPVNTTACVFERNSADDGGAFYSAAGYDLVQDCSFQANFAAL-----------SGGALLHSGVLVGVHXXXXXXXXXXXXXXXXXXXXIAENFTDVTFAENTFYCAPGQYGSDAHFLDEEVADTCRLEVVCS 342
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BLAST of mRNA_F-serratus_M_contig6235.17077.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.770e-9
Identity = 47/132 (35.61%), Postives = 64/132 (48.48%), Query Frame = 1 
Query:    4 PSNITGCRFDGNNA-TDGGAIYTAAGYDRVVNSSFTRNFAGIIASTVKHLETVQGGALLHSGVLVALTGCTFEFNMAGEDG-LAVMSLGIADNISDLSFRNNSFFCPSGKYGFTEDS-ELVEV--RPCPTRC 384
            P+    CRF  N A   GGA+ TAAG D+ VNS F  N AG             GGAL  +G    +  C+F  N++ + G  AV ++G   ++S+LSF  N + C  G +   E+S  L E     CP  C
Sbjct:  370 PTTFEQCRFTSNRAIATGGAVDTAAGQDKFVNSVFEGNTAG------------TGGALRLAGT-AEVNNCSFVENVSDDGGGAAVSNIGFVSSVSNLSFSRNVYGCQEGMFLECEESGTLYEAICDGCPVEC 488
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BLAST of mRNA_F-serratus_M_contig6235.17077.1 vs. uniprot
Match: A0A6H5L200_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L200_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 6.010e-9
Identity = 25/65 (38.46%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:  136 TVKHLETVQGGALLHSGVLVALTGCTFEFNMAGEDGLAVMSLGIADNISDLSFRNNSFFCPSGKY 330
            +V ++    GGAL+H+ ++  ++   FE N AG +G AV+SLGI ++++ + F+ N F+CP G Y
Sbjct:   10 SVYNVAESSGGALVHARMITEMSSTVFEGNDAGNEGPAVLSLGIVESMTGVVFQENGFYCPVGTY 74
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6235.17077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JWI3_9PHAE1.740e-2247.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPF6_ECTSI1.320e-1842.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUB6_ECTSI1.240e-1637.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2Z8_ECTSI2.770e-935.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L200_9PHAE6.010e-938.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6235contigF-serratus_M_contig6235:35744..36268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue1.9e-09
Seed eggNOG ortholog2880.D8LIY0
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931931.5709662-CDS-F-serratus_M_contig6235:35743..359761622931931.5709662-CDS-F-serratus_M_contig6235:35743..35976Fucus serratus maleCDSF-serratus_M_contig6235 35744..35976 -
1690964063.2952886-CDS-F-serratus_M_contig6235:35743..359761690964063.2952886-CDS-F-serratus_M_contig6235:35743..35976Fucus serratus maleCDSF-serratus_M_contig6235 35744..35976 -
1622931931.5886183-CDS-F-serratus_M_contig6235:36114..362681622931931.5886183-CDS-F-serratus_M_contig6235:36114..36268Fucus serratus maleCDSF-serratus_M_contig6235 36115..36268 -
1690964063.3069434-CDS-F-serratus_M_contig6235:36114..362681690964063.3069434-CDS-F-serratus_M_contig6235:36114..36268Fucus serratus maleCDSF-serratus_M_contig6235 36115..36268 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6235.17077.1prot_F-serratus_M_contig6235.17077.1Fucus serratus malepolypeptideF-serratus_M_contig6235 35744..36268 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6235.17077.1

>prot_F-serratus_M_contig6235.17077.1 ID=prot_F-serratus_M_contig6235.17077.1|Name=mRNA_F-serratus_M_contig6235.17077.1|organism=Fucus serratus male|type=polypeptide|length=129bp
GPSNITGCRFDGNNATDGGAIYTAAGYDRVVNSSFTRNFAGIIASTVKHL
ETVQGGALLHSGVLVALTGCTFEFNMAGEDGLAVMSLGIADNISDLSFRN
NSFFCPSGKYGFTEDSELVEVRPCPTRCS
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mRNA from alignment at F-serratus_M_contig6235:35744..36268-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6235.17077.1 ID=mRNA_F-serratus_M_contig6235.17077.1|Name=mRNA_F-serratus_M_contig6235.17077.1|organism=Fucus serratus male|type=mRNA|length=525bp|location=Sequence derived from alignment at F-serratus_M_contig6235:35744..36268- (Fucus serratus male)
GGCCCCTCCAATATCACCGGATGCCGTTTCGACGGAAACAATGCAACTGA
CGGAGGGGCCATTTATACCGCTGCAGGCTACGATAGGGTCGTTAACTCTT
CATTCACAAGAAATTTTGCAGGTATCATAGCTTCTACGGTTAAACACCTT
GAAAGTTCTGGACGGGGATGATACCACAACAAAGATTGATTGAGCGTTTT
GAGTTACACATATTAACTCCCGAGAAGGGCATCGCTCCGCCAACACACTC
TTACCAACCTATTTGTTATCTTATTTTTGCTATAATTACCAGCGGTCCAA
GGCGGTGCTCTCCTGCACTCCGGTGTCCTCGTAGCCCTTACTGGATGTAC
CTTTGAGTTTAATATGGCTGGCGAGGACGGACTAGCTGTCATGAGCCTCG
GGATCGCAGATAACATCTCAGACTTATCGTTCCGAAACAATTCCTTTTTC
TGCCCTTCGGGCAAGTACGGCTTCACGGAGGATAGCGAGTTGGTCGAGGT
AAGACCGTGTCCTACGAGATGTTCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6235:35744..36268-

>mRNA_F-serratus_M_contig6235.17077.1 ID=mRNA_F-serratus_M_contig6235.17077.1|Name=mRNA_F-serratus_M_contig6235.17077.1|organism=Fucus serratus male|type=CDS|length=774bp|location=Sequence derived from alignment at F-serratus_M_contig6235:35744..36268- (Fucus serratus male)
GGCCCCTCCAATATCACCGGATGCCGTTTCGACGGAAACAATGCAACTGA
CGGAGGGGCCATTTATACCGCTGCAGGCTACGATAGGGTCGTTAACTCTT
CATTCACAAGAAATTTTGCAGGTATCATAGCTTCTACGGTTAAACACCTT
GAAAGGCCCCTCCAATATCACCGGATGCCGTTTCGACGGAAACAATGCAA
CTGACGGAGGGGCCATTTATACCGCTGCAGGCTACGATAGGGTCGTTAAC
TCTTCATTCACAAGAAATTTTGCAGGTATCATAGCTTCTACGGTTAAACA
CCTTGAAACGGTCCAAGGCGGTGCTCTCCTGCACTCCGGTGTCCTCGTAG
CCCTTACTGGATGTACCTTTGAGTTTAATATGGCTGGCGAGGACGGACTA
GCTGTCATGAGCCTCGGGATCGCAGATAACATCTCAGACTTATCGTTCCG
AAACAATTCCTTTTTCTGCCCTTCGGGCAAGTACGGCTTCACGGAGGATA
GCGAGTTGGTCGAGGTAAGACCGTGTCCTACGAGATGTTCACGGTCCAAG
GCGGTGCTCTCCTGCACTCCGGTGTCCTCGTAGCCCTTACTGGATGTACC
TTTGAGTTTAATATGGCTGGCGAGGACGGACTAGCTGTCATGAGCCTCGG
GATCGCAGATAACATCTCAGACTTATCGTTCCGAAACAATTCCTTTTTCT
GCCCTTCGGGCAAGTACGGCTTCACGGAGGATAGCGAGTTGGTCGAGGTA
AGACCGTGTCCTACGAGATGTTCA
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