prot_F-serratus_M_contig6235.17076.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig6235.17076.1
Unique Nameprot_F-serratus_M_contig6235.17076.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length58
Homology
BLAST of mRNA_F-serratus_M_contig6235.17076.1 vs. uniprot
Match: D7FMN3_ECTSI (Ribosome biogenesis regulatory protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMN3_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 2.740e-24
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 0
Query:    1 MVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKNIT 58
            MVWD+D+KEWRPRHGYKRANDGVLNH IVE+K GKD   +PW+EAR EKK RV KN++
Sbjct:  129 MVWDDDLKEWRPRHGYKRANDGVLNHAIVEVKPGKDPMANPWSEAREEKKGRVEKNLS 186          
BLAST of mRNA_F-serratus_M_contig6235.17076.1 vs. uniprot
Match: A0A7S3H471_9STRA (Ribosome biogenesis regulatory protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H471_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.700e-14
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 0
Query:    1 MVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKN 56
            MV+D + +E+RPR GYK AN G+   PIVE+K G+D   DPWAEAR +KKARV KN
Sbjct:  203 MVFDENNQEFRPRFGYKGANSGIEEIPIVEVKPGQDPFADPWAEARTDKKARVKKN 258          
BLAST of mRNA_F-serratus_M_contig6235.17076.1 vs. uniprot
Match: A0A812RX42_SYMMI (Ribosome biogenesis regulatory protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RX42_SYMMI)

HSP 1 Score: 67.0 bits (162), Expect = 8.840e-12
Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 0
Query:    1 MVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKN 56
            MV+D   +E++PR GYK  N G   H I+E+ EG+D   DPWA ARA KKARV KN
Sbjct:   51 MVFDEQTEEYKPRFGYKGINQGEEEHAIIEVGEGQDPYADPWAAARAGKKARVEKN 106          
BLAST of mRNA_F-serratus_M_contig6235.17076.1 vs. uniprot
Match: A0A023GEZ8_AMBTT (Ribosome biogenesis regulatory protein (Fragment) n=11 Tax=Amblyomma TaxID=6942 RepID=A0A023GEZ8_AMBTT)

HSP 1 Score: 63.2 bits (152), Expect = 3.130e-10
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 0
Query:    1 MVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKN 56
            +VWD  +K+WRPR+GYKRA     N+ +VEI EGKD  +D   E + +KK RV KN
Sbjct:  130 LVWDETIKDWRPRYGYKRAKVEKANNWVVEIPEGKDPMVDYHGELKKKKKERVAKN 185          
BLAST of mRNA_F-serratus_M_contig6235.17076.1 vs. uniprot
Match: A0A023FV26_AMBPA (Ribosome biogenesis regulatory protein (Fragment) n=1 Tax=Amblyomma parvum TaxID=251391 RepID=A0A023FV26_AMBPA)

HSP 1 Score: 61.6 bits (148), Expect = 7.320e-10
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 0
Query:    1 MVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKN 56
            +VWD  +K+WRPR+GYKRA      + +VEI EGKD  +D  AE + +KK RV KN
Sbjct:   43 LVWDETIKDWRPRYGYKRAKVEKEKNWVVEIPEGKDPMVDYHAELKKKKKERVAKN 98          
BLAST of mRNA_F-serratus_M_contig6235.17076.1 vs. uniprot
Match: A0A6M2CP06_RHIMP (Ribosome biogenesis regulatory protein n=9 Tax=Ixodidae TaxID=6939 RepID=A0A6M2CP06_RHIMP)

HSP 1 Score: 60.8 bits (146), Expect = 2.080e-9
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 0
Query:    1 MVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKN 56
            +VWD  +K+WRPR+GYKRA     N+ ++E+ E KD  +D  AE + +KK RV KN
Sbjct:  129 LVWDETIKDWRPRYGYKRAQVEKKNNWLIEVPENKDPMVDYHAELKKKKKERVAKN 184          
BLAST of mRNA_F-serratus_M_contig6235.17076.1 vs. uniprot
Match: A0A6P7VL97_IXOSC (Ribosome biogenesis regulatory protein n=4 Tax=Ixodes TaxID=6944 RepID=A0A6P7VL97_IXOSC)

HSP 1 Score: 57.0 bits (136), Expect = 4.920e-8
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 0
Query:    1 MVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKN 56
            +VWD  +K+WRPR+GYKRA      + +VE+ +GKD  +D   E + +KK RV KN
Sbjct:  129 LVWDETIKDWRPRYGYKRALVEKQKNWVVEVPDGKDPYVDYVGELKEKKKERVAKN 184          
BLAST of mRNA_F-serratus_M_contig6235.17076.1 vs. uniprot
Match: F2TWF3_SALR5 (Ribosome biogenesis regulatory protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TWF3_SALR5)

HSP 1 Score: 56.2 bits (134), Expect = 7.380e-8
Identity = 28/56 (50.00%), Postives = 36/56 (64.29%), Query Frame = 0
Query:    1 MVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKN 56
            M++D    EWRPR GYKRAND     P +E+KEG D   D + + + +KKARV KN
Sbjct:  128 MLYDEMSGEWRPRWGYKRANDAAAV-PWIEVKEGSDPYEDQYEKLKKDKKARVEKN 182          
BLAST of mRNA_F-serratus_M_contig6235.17076.1 vs. uniprot
Match: A0A8B8CG92_CRAVI (Ribosome biogenesis regulatory protein n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8CG92_CRAVI)

HSP 1 Score: 54.7 bits (130), Expect = 3.240e-7
Identity = 26/56 (46.43%), Postives = 33/56 (58.93%), Query Frame = 0
Query:    1 MVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKN 56
            M WD+  KEW+PR GYKRAND      I      +D  +D +A+ + EKK RV KN
Sbjct:  128 MTWDDQSKEWKPRWGYKRANDDTQEWCIEVPDNAEDPNVDLFAKRKKEKKERVAKN 183          
BLAST of mRNA_F-serratus_M_contig6235.17076.1 vs. uniprot
Match: A0A4D5RJV7_IXOSC (Ribosome biogenesis regulatory protein (Fragment) n=1 Tax=Ixodes scapularis TaxID=6945 RepID=A0A4D5RJV7_IXOSC)

HSP 1 Score: 54.3 bits (129), Expect = 4.280e-7
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 0
Query:    1 MVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKN 56
            +VWD  +K+WRPR+GYKRA      + +VE+ +GKD  +D   E + EKK RV KN
Sbjct:  129 LVWDETIKDWRPRYGYKRALVEKQKNWVVEVPDGKDPYVDYVGELK-EKKERVAKN 183          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6235.17076.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMN3_ECTSI2.740e-2474.14Ribosome biogenesis regulatory protein n=2 Tax=Ect... [more]
A0A7S3H471_9STRA2.700e-1460.71Ribosome biogenesis regulatory protein (Fragment) ... [more]
A0A812RX42_SYMMI8.840e-1255.36Ribosome biogenesis regulatory protein n=1 Tax=Sym... [more]
A0A023GEZ8_AMBTT3.130e-1051.79Ribosome biogenesis regulatory protein (Fragment) ... [more]
A0A023FV26_AMBPA7.320e-1051.79Ribosome biogenesis regulatory protein (Fragment) ... [more]
A0A6M2CP06_RHIMP2.080e-948.21Ribosome biogenesis regulatory protein n=9 Tax=Ixo... [more]
A0A6P7VL97_IXOSC4.920e-846.43Ribosome biogenesis regulatory protein n=4 Tax=Ixo... [more]
F2TWF3_SALR57.380e-850.00Ribosome biogenesis regulatory protein n=1 Tax=Sal... [more]
A0A8B8CG92_CRAVI3.240e-746.43Ribosome biogenesis regulatory protein n=2 Tax=Cra... [more]
A0A4D5RJV7_IXOSC4.280e-748.21Ribosome biogenesis regulatory protein (Fragment) ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007023Ribosomal biogenesis regulatory proteinPFAMPF04939RRS1coord: 1..56
e-value: 2.6E-13
score: 50.1
IPR007023Ribosomal biogenesis regulatory proteinPANTHERPTHR17602RIBOSOME BIOGENESIS REGULATORY PROTEINcoord: 1..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6235contigF-serratus_M_contig6235:10542..11547 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6235.17076.1mRNA_F-serratus_M_contig6235.17076.1Fucus serratus malemRNAF-serratus_M_contig6235 10517..11547 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig6235.17076.1 ID=prot_F-serratus_M_contig6235.17076.1|Name=mRNA_F-serratus_M_contig6235.17076.1|organism=Fucus serratus male|type=polypeptide|length=58bp
MVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKK
ARVNKNIT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007023Ribosom_reg