mRNA_F-serratus_M_contig6235.17076.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6235.17076.1
Unique NamemRNA_F-serratus_M_contig6235.17076.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig6235.17076.1 vs. uniprot
Match: D7FMN3_ECTSI (Ribosome biogenesis regulatory protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMN3_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 6.170e-28
Identity = 50/66 (75.76%), Postives = 57/66 (86.36%), Query Frame = 2 
Query:    2 ITGKKRSRMVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKNIT 199
            ITG KRSRMVWD+D+KEWRPRHGYKRANDGVLNH IVE+K GKD   +PW+EAR EKK RV KN++
Sbjct:  121 ITGSKRSRMVWDDDLKEWRPRHGYKRANDGVLNHAIVEVKPGKDPMANPWSEAREEKKGRVEKNLS 186
[Close]
BLAST of mRNA_F-serratus_M_contig6235.17076.1 vs. uniprot
Match: A0A836CG24_9STRA (Ribosome biogenesis regulatory protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG24_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.170e-19
Identity = 45/66 (68.18%), Postives = 47/66 (71.21%), Query Frame = 2 
Query:    2 ITGKKRSRMVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKNIT 199
            I  KK SRMVWD D KEWRP  GYKR NDGVL+ PIVE K   D   DPW EARA KKARV KN+T
Sbjct:  120 IKAKKSSRMVWDEDHKEWRPNWGYKRGNDGVLDLPIVEHKSNADIMADPWTEARAAKKARVVKNLT 185
[Close]
BLAST of mRNA_F-serratus_M_contig6235.17076.1 vs. uniprot
Match: A0A7S3H471_9STRA (Ribosome biogenesis regulatory protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H471_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 4.850e-16
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 2 
Query:    2 ITGKKRSRMVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKN 193
            I  KKR RMV+D + +E+RPR GYK AN G+   PIVE+K G+D   DPWAEAR +KKARV KN
Sbjct:  195 IKKKKRERMVFDENNQEFRPRFGYKGANSGIEEIPIVEVKPGQDPFADPWAEARTDKKARVKKN 258
[Close]
BLAST of mRNA_F-serratus_M_contig6235.17076.1 vs. uniprot
Match: A0A812RX42_SYMMI (Ribosome biogenesis regulatory protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RX42_SYMMI)

HSP 1 Score: 70.9 bits (172), Expect = 4.570e-13
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 2 
Query:    2 ITGKKRSRMVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKN 193
            I  +KR RMV+D   +E++PR GYK  N G   H I+E+ EG+D   DPWA ARA KKARV KN
Sbjct:   43 IKKRKRERMVFDEQTEEYKPRFGYKGINQGEEEHAIIEVGEGQDPYADPWAAARAGKKARVEKN 106
[Close]
BLAST of mRNA_F-serratus_M_contig6235.17076.1 vs. uniprot
Match: A0A023GEZ8_AMBTT (Ribosome biogenesis regulatory protein (Fragment) n=11 Tax=Amblyomma TaxID=6942 RepID=A0A023GEZ8_AMBTT)

HSP 1 Score: 65.9 bits (159), Expect = 4.700e-11
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 2 
Query:    2 ITGKKRSRMVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKN 193
            I  +KR ++VWD  +K+WRPR+GYKRA     N+ +VEI EGKD  +D   E + +KK RV KN
Sbjct:  122 IKPRKREKLVWDETIKDWRPRYGYKRAKVEKANNWVVEIPEGKDPMVDYHGELKKKKKERVAKN 185
[Close]
BLAST of mRNA_F-serratus_M_contig6235.17076.1 vs. uniprot
Match: A0A023FV26_AMBPA (Ribosome biogenesis regulatory protein (Fragment) n=1 Tax=Amblyomma parvum TaxID=251391 RepID=A0A023FV26_AMBPA)

HSP 1 Score: 64.3 bits (155), Expect = 1.010e-10
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 2 
Query:    2 ITGKKRSRMVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKN 193
            I  +KR ++VWD  +K+WRPR+GYKRA      + +VEI EGKD  +D  AE + +KK RV KN
Sbjct:   35 IKPRKREKLVWDETIKDWRPRYGYKRAKVEKEKNWVVEIPEGKDPMVDYHAELKKKKKERVAKN 98
[Close]
BLAST of mRNA_F-serratus_M_contig6235.17076.1 vs. uniprot
Match: A0A6M2CP06_RHIMP (Ribosome biogenesis regulatory protein n=9 Tax=Ixodidae TaxID=6939 RepID=A0A6M2CP06_RHIMP)

HSP 1 Score: 64.3 bits (155), Expect = 1.660e-10
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 2 
Query:    2 ITGKKRSRMVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKN 193
            I  +KR ++VWD  +K+WRPR+GYKRA     N+ ++E+ E KD  +D  AE + +KK RV KN
Sbjct:  121 IKSRKREKLVWDETIKDWRPRYGYKRAQVEKKNNWLIEVPENKDPMVDYHAELKKKKKERVAKN 184
[Close]
BLAST of mRNA_F-serratus_M_contig6235.17076.1 vs. uniprot
Match: A0A6P7S783_OCTVU (Ribosome biogenesis regulatory protein n=2 Tax=Octopus TaxID=6643 RepID=A0A6P7S783_OCTVU)

HSP 1 Score: 61.6 bits (148), Expect = 1.510e-9
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 2 
Query:    2 ITGKKRSRMVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKN 193
            IT KK+SRMVWD+  K+WRPR GYKRAND   +   +E+    D   D +A+ +A KK RV KN
Sbjct:  120 ITKKKKSRMVWDDVAKDWRPRWGYKRANDDTKDW-CIEVPTNADPNEDQFAKRKAAKKERVAKN 182
[Close]
BLAST of mRNA_F-serratus_M_contig6235.17076.1 vs. uniprot
Match: F2TWF3_SALR5 (Ribosome biogenesis regulatory protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TWF3_SALR5)

HSP 1 Score: 60.5 bits (145), Expect = 2.850e-9
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 2 
Query:   14 KRSRMVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKN 193
            KRSRM++D    EWRPR GYKRAND     P +E+KEG D   D + + + +KKARV KN
Sbjct:  124 KRSRMLYDEMSGEWRPRWGYKRANDAAAV-PWIEVKEGSDPYEDQYEKLKKDKKARVEKN 182
[Close]
BLAST of mRNA_F-serratus_M_contig6235.17076.1 vs. uniprot
Match: A0A6P7VL97_IXOSC (Ribosome biogenesis regulatory protein n=4 Tax=Ixodes TaxID=6944 RepID=A0A6P7VL97_IXOSC)

HSP 1 Score: 58.5 bits (140), Expect = 1.930e-8
Identity = 28/64 (43.75%), Postives = 42/64 (65.62%), Query Frame = 2 
Query:    2 ITGKKRSRMVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKKARVNKN 193
            I  +K+ ++VWD  +K+WRPR+GYKRA      + +VE+ +GKD  +D   E + +KK RV KN
Sbjct:  121 IKRRKKEKLVWDETIKDWRPRYGYKRALVEKQKNWVVEVPDGKDPYVDYVGELKEKKKERVAKN 184
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6235.17076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMN3_ECTSI6.170e-2875.76Ribosome biogenesis regulatory protein n=2 Tax=Ect... [more]
A0A836CG24_9STRA2.170e-1968.18Ribosome biogenesis regulatory protein-domain-cont... [more]
A0A7S3H471_9STRA4.850e-1660.94Ribosome biogenesis regulatory protein (Fragment) ... [more]
A0A812RX42_SYMMI4.570e-1354.69Ribosome biogenesis regulatory protein n=1 Tax=Sym... [more]
A0A023GEZ8_AMBTT4.700e-1150.00Ribosome biogenesis regulatory protein (Fragment) ... [more]
A0A023FV26_AMBPA1.010e-1050.00Ribosome biogenesis regulatory protein (Fragment) ... [more]
A0A6M2CP06_RHIMP1.660e-1046.88Ribosome biogenesis regulatory protein n=9 Tax=Ixo... [more]
A0A6P7S783_OCTVU1.510e-951.56Ribosome biogenesis regulatory protein n=2 Tax=Oct... [more]
F2TWF3_SALR52.850e-953.33Ribosome biogenesis regulatory protein n=1 Tax=Sal... [more]
A0A6P7VL97_IXOSC1.930e-843.75Ribosome biogenesis regulatory protein n=4 Tax=Ixo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6235contigF-serratus_M_contig6235:10517..11547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue3.2e-20
Seed eggNOG ortholog2880.D7FMN3
Preferred nameRRS1
KEGG koko:K14852,ko:K15030
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000027,GO:0000054,GO:0000055,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000793,GO:0000794,GO:0000819,GO:0001650,GO:0002244,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005783,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0007275,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009966,GO:0009987,GO:0010467,GO:0010646,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0030097,GO:0030154,GO:0030490,GO:0030684,GO:0030687,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033750,GO:0034399,GO:0034470,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0042274,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048285,GO:0048513,GO:0048534,GO:0048583,GO:0048731,GO:0048856,GO:0048869,GO:0050000,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051276,GO:0051303,GO:0051310,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0098813,GO:0140014,GO:1901360,GO:1901363,GO:1901796,GO:1902531,GO:1902570,GO:1903047,GO:1990904
EggNOG free text desc.ribosomal large subunit export from nucleus
EggNOG OGsCOG5225@1,KOG1765@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03012
Exons2
Model size200
Cds size174
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6235.17076.1prot_F-serratus_M_contig6235.17076.1Fucus serratus malepolypeptideF-serratus_M_contig6235 10542..11547 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931931.4886906-UTR-F-serratus_M_contig6235:10516..105411622931931.4886906-UTR-F-serratus_M_contig6235:10516..10541Fucus serratus maleUTRF-serratus_M_contig6235 10517..10541 +
1690964063.2573059-UTR-F-serratus_M_contig6235:10516..105411690964063.2573059-UTR-F-serratus_M_contig6235:10516..10541Fucus serratus maleUTRF-serratus_M_contig6235 10517..10541 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931931.5005114-CDS-F-serratus_M_contig6235:10541..106401622931931.5005114-CDS-F-serratus_M_contig6235:10541..10640Fucus serratus maleCDSF-serratus_M_contig6235 10542..10640 +
1690964063.2759004-CDS-F-serratus_M_contig6235:10541..106401690964063.2759004-CDS-F-serratus_M_contig6235:10541..10640Fucus serratus maleCDSF-serratus_M_contig6235 10542..10640 +
1622931931.520943-CDS-F-serratus_M_contig6235:11472..115471622931931.520943-CDS-F-serratus_M_contig6235:11472..11547Fucus serratus maleCDSF-serratus_M_contig6235 11473..11547 +
1690964063.2853916-CDS-F-serratus_M_contig6235:11472..115471690964063.2853916-CDS-F-serratus_M_contig6235:11472..11547Fucus serratus maleCDSF-serratus_M_contig6235 11473..11547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6235.17076.1

>prot_F-serratus_M_contig6235.17076.1 ID=prot_F-serratus_M_contig6235.17076.1|Name=mRNA_F-serratus_M_contig6235.17076.1|organism=Fucus serratus male|type=polypeptide|length=58bp
MVWDNDMKEWRPRHGYKRANDGVLNHPIVEIKEGKDDTIDPWAEARAEKK
ARVNKNIT
back to top

mRNA from alignment at F-serratus_M_contig6235:10517..11547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6235.17076.1 ID=mRNA_F-serratus_M_contig6235.17076.1|Name=mRNA_F-serratus_M_contig6235.17076.1|organism=Fucus serratus male|type=mRNA|length=1031bp|location=Sequence derived from alignment at F-serratus_M_contig6235:10517..11547+ (Fucus serratus male)
CATCACCGGCAAGAAGCGGTCGCGTATGGTGTGGGACAACGACATGAAAG
AGTGGCGTCCGAGGCACGGCTACAAGAGGGCCAACGACGGCGTGCTGAAC
CACCCCATCGTGGAGATCAAGGAGGTGATAAAAGACAGGGAGGCGTGTTT
TTTTAGGCGGGGACGGGGGGATGACTTTCCCACTTTCTGGGGATGTTGGC
AGAGGAGGCGACGTGGGATATCGCCAACAGTCGTGATAAAGGAAAGGGGG
TGGAAGGGGTGGATTGTGACCGAACCGTGATAAAGGAAAGGGGGTGGATT
GTGACAAATCCATTCGCTTGGTAAGGGCGCGATTACCGAACCGACCACAA
ACACCCTGTTCAGAACTGCTACACCGTCGCCTTTTGTTCGCTTTCCCCTT
CCACCCAGTATTTGTCTTGAAACCACCTGGTAGAGAAGAACATCGAGAAA
GTGCTACATTAGTTTCCGGCGGGTTGACACCATCCGCCGTCGGTGATGCC
CAATATGATAGAATGATAGAATGATAGAATGGGAAAATATATAATGGGAC
AGGAAGTCTTGAGAATTGCTCCAAAATAAGATTTGGTTTGAAGTTTCAGT
GGGTCAAGACAAAACAACGCAAGCGATAACATGCGCACACTCTAACACAC
AGTAACCCTACGCATAGAGATGTTGGTGAGATACTTTATTATGCTATATA
CAACGGACGCGGTACTTCTGTAGGGCTGAATGAATAGTTGACAGGTTGAT
GAAGTCAGGGAGCCATATACAACGGCAGCAGCACGTTATGAAGTGTGGTT
TGTATTTCCTTTCCGTGGGTGCGTTTTTCTTTCGTTGAGATGATTCTTGA
GCTTTCATTTACAGTGATCTTCCCGGTCGTCGCCGTCCCCCGCCCCCGCC
TCCCCCATCGGACGCAAACGCCTACTTTTGCTTAAATCGTATCTCGAAAT
CGAAAGGGCAAAGACGACACGATCGACCCCTGGGCAGAGGCGAGGGCGGA
GAAGAAGGCTAGGGTTAACAAGAATATCACC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig6235:10517..11547+

>mRNA_F-serratus_M_contig6235.17076.1 ID=mRNA_F-serratus_M_contig6235.17076.1|Name=mRNA_F-serratus_M_contig6235.17076.1|organism=Fucus serratus male|type=CDS|length=348bp|location=Sequence derived from alignment at F-serratus_M_contig6235:10517..11547+ (Fucus serratus male)
ATGGTGTGGGACAACGACATGAAAGAGTGGCGTCCGAGGCACGGCTACAA
GAGGGCCAACGACGGCGTGCTGAACCACCCCATCGTGGAGATCAAGGAGA
TGGTGTGGGACAACGACATGAAAGAGTGGCGTCCGAGGCACGGCTACAAG
AGGGCCAACGACGGCGTGCTGAACCACCCCATCGTGGAGATCAAGGAGGG
CAAAGACGACACGATCGACCCCTGGGCAGAGGCGAGGGCGGAGAAGAAGG
CTAGGGTTAACAAGAATATCACCGGCAAAGACGACACGATCGACCCCTGG
GCAGAGGCGAGGGCGGAGAAGAAGGCTAGGGTTAACAAGAATATCACC
back to top