mRNA_F-serratus_M_contig6221.17068.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig6221.17068.1 vs. uniprot
Match: A0A6H5L7G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G9_9PHAE) HSP 1 Score: 109 bits (272), Expect = 1.180e-24 Identity = 65/193 (33.68%), Postives = 97/193 (50.26%), Query Frame = 1
Query: 64 RQKFVQSLQRKVNVAIIDNS-----RFPFTNFMVYPPAPAFG---GVLARDHYYRRPCFVWVVELACKRYFPGHP--PCPVCKSSRGVKRKEWCSRRAILRDGSCDLTF-FVYQCTVCAKSNAGKPKDERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSH 609
+++F + ++ K++ +I RFPF N +V P F + D +Y++ VW+ E FP PCP C R + D F Y+C CA+ N GK + E+ +F WDAG L +LP ++ + FPFLLTKRS I++ +V + DDLVH KGF A A+ +RQ+H
Sbjct: 45 QERFFEEVKDKIDQSITHEGGGVKGRFPFDNPLVRPKCATFQPSPDLPKLDRFYQKAVLVWIPEFL----FPELQAVPCPGCGGKGAPDGWNPQGPRRVFMDHDVAYVMGFRYKCAKCAEFNKGKQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAH 233
BLAST of mRNA_F-serratus_M_contig6221.17068.1 vs. uniprot
Match: A0A6H5JXN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN0_9PHAE) HSP 1 Score: 104 bits (260), Expect = 1.190e-22 Identity = 66/200 (33.00%), Postives = 99/200 (49.50%), Query Frame = 1
Query: 49 SLDHVRQKFVQSLQRKVNVAIIDNS-----RFPFTNFMVYPPAPAFG---GVLARDHYYRRPCFVWVVELACKRYFPGHP--PCPVCKSSRGVKRKEWCS---RRAILRDGSCDLTFFVYQCTVCAKSNAGKPKDERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSH 609
S +++F + ++ K++ +I RFPF N +V P F + D +Y++ VW+ E FP PCP C +G W RR + + F Y+C CA+ N GK + E+ +F WDAG L +LP ++ + FPFLLTKRS I++ V + D LVH KGF A+ +RQ+H
Sbjct: 104 STSSAQERFFEEVKDKIDRSITHEGGGVKGRFPFDNPLVRPKCATFQPSPDLPKLDRFYQKAVLVWIPEFL----FPELQAVPCPGC-GGKGAP-DGWNPKGPRRVFMEHDVAYVMGFRYKCAKCAEFNKGKQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICKVDRLTDHLVHGKGFSGAAKDIRQAH 297
BLAST of mRNA_F-serratus_M_contig6221.17068.1 vs. uniprot
Match: A0A6H5JPP4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP4_9PHAE) HSP 1 Score: 103 bits (258), Expect = 1.400e-22 Identity = 65/195 (33.33%), Postives = 99/195 (50.77%), Query Frame = 1
Query: 64 RQKFVQSLQRKVNVAIIDNS-----RFPFTNFMVYPPAPAFG---GVLARDHYYRRPCFVWVVELACKRYFPGHP--PCPVCKSSRGVKRKEWCS---RRAILRDGSCDLTFFVYQCTVCAKSNAGKPKDERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSH 609
+++F + ++ K++ +I RFPF N +V P F + D +Y++ VW+ E FP PCP C +G W RR + + F Y+C CA+ N GK + E+ +F W AG L +LP ++ + FPFLLTKRS I++ +V + DDLVH KGF A A+ + Q+H
Sbjct: 45 QERFFEEVKDKIDRSITHEGGGVKGRFPFDNPLVRPKCATFQPSPDLPKLDRFYQKAVLVWIPEFL----FPELQAVPCPGC-GGKGAP-DGWNPKGPRRVFMEHDVAYVMGFRYKCAKCAEFNKGKQEAEKRKTSFNAWGAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNICQAH 233
BLAST of mRNA_F-serratus_M_contig6221.17068.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI) HSP 1 Score: 102 bits (254), Expect = 1.220e-21 Identity = 54/160 (33.75%), Postives = 82/160 (51.25%), Query Frame = 1
Query: 127 FPFTNFMVYPPAPAF---GGVLARDHYYRRPCFVWVVELACKRYFPGHPPCPVCKSSRGVKRKEWCSRRAILRDGSCDLTFFVYQCTVCAKSNAGKPKDERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEAL 597
FP+ +P P+ G+ +Y + FVWV E + PCP C RR L D C L + Y C C ++N G+P+DER ++TF WDAGVL + ++ + FPF+LTK++AI ++V + DDL+ GF A +++L
Sbjct: 7 FPYNGGWAHPRLPSLHRGAGLPPLGPFYLKKVFVWVPEYLWDEI--EYIPCPHCNKRAQPDGWNTEPRRVFLEDDVCYLIGYRYLCKGCTEANKGRPEDERTTQTFNAWDAGVLATMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFAAASKSL 164
BLAST of mRNA_F-serratus_M_contig6221.17068.1 vs. uniprot
Match: A0A6H5KTU1_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTU1_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 5.280e-19 Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 1
Query: 352 LTFFVYQCTVCAKSNAGKPKDERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSH 609
+T F Y+C CA+ N GK + E+ +F WDAG L +LP ++ + FPFLLTKRS I++ +V + DDLVH KGF A A+ +RQ+H
Sbjct: 8 VTGFRYKCAKCAEFNKGKQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAH 93
BLAST of mRNA_F-serratus_M_contig6221.17068.1 vs. uniprot
Match: A0A6H5KGK6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK6_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 2.940e-18 Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 1
Query: 361 FVYQCTVCAKSNAGKPKDERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSH 609
F Y+C CA+ N GK + E+ +F WDAG L +LP ++ + FPFLLTKRS I++ +V + DDLVH KG A A+ +RQ+H
Sbjct: 11 FRYKCAKCAEFNKGKQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGLSAAAKNIRQAH 93
BLAST of mRNA_F-serratus_M_contig6221.17068.1 vs. uniprot
Match: A0A6H5KDX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX0_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 5.210e-18 Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 1
Query: 319 RRAILRDGSCDLTFFVYQCTVCAKSNAGKPKDERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSH 609
RR + F Y+C CA+ N GK + E+ +F WDAG L +LP ++ + FPFLLTKRS I++ +V + DDLVH K F A A+ +RQ+H
Sbjct: 103 RRVFTEHDVAYVMEFRYKCAKCAEFNKGKQEAEKHKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVNRLADDLVHGKDFSAAAKNIRQAH 199
BLAST of mRNA_F-serratus_M_contig6221.17068.1 vs. uniprot
Match: A0A6H5KJA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA7_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 1.190e-17 Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = 1
Query: 364 VYQCTVCAKSNAGKPKDERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSH 609
VY+C CA+ N GK + E+ +F WDAG L +LP ++ + FPFLLTKRS I++ ++ + D LVH KGF A + +RQ+H
Sbjct: 11 VYKCAKCAEFNKGKQRAEKCKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMLDRLADGLVHGKGFSAGTKNIRQAH 92
BLAST of mRNA_F-serratus_M_contig6221.17068.1 vs. uniprot
Match: D7FSB0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSB0_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 2.330e-16 Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 361 FVYQCTVCAKSNAGKPKDERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSH 609
F Y+C CA+ N GK + + +F WDAG L +LP ++ + FPFLLTKRS I++ +V + DDLVH K F A A+ + Q+H
Sbjct: 3 FRYKCAKCAEFNKGKQEVGKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEIRMVDRLADDLVHGKDFSAAAKNICQAH 85
BLAST of mRNA_F-serratus_M_contig6221.17068.1 vs. uniprot
Match: A0A6H5KT01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT01_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 4.570e-16 Identity = 41/97 (42.27%), Postives = 57/97 (58.76%), Query Frame = 1
Query: 319 RRAILRDGSCDLTFFVYQCTVCAKSNAGKPKDERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSH 609
RR + + F Y+C A+ N GK + E WDAG L +LP ++ + FPFLLTKRS I++ +V + DDLVH KGF A A+ +RQ+H
Sbjct: 16 RRVFMDHDVAYVMGFRYKCAKGAEFNKGKQEAETRKTRVNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAH 112 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6221.17068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6221.17068.1 >prot_F-serratus_M_contig6221.17068.1 ID=prot_F-serratus_M_contig6221.17068.1|Name=mRNA_F-serratus_M_contig6221.17068.1|organism=Fucus serratus male|type=polypeptide|length=206bp GGSAAGSPGSAPQAIQSLDHVRQKFVQSLQRKVNVAIIDNSRFPFTNFMVback to top mRNA from alignment at F-serratus_M_contig6221:21279..22669+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig6221.17068.1 ID=mRNA_F-serratus_M_contig6221.17068.1|Name=mRNA_F-serratus_M_contig6221.17068.1|organism=Fucus serratus male|type=mRNA|length=1391bp|location=Sequence derived from alignment at F-serratus_M_contig6221:21279..22669+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig6221:21279..22669+ >mRNA_F-serratus_M_contig6221.17068.1 ID=mRNA_F-serratus_M_contig6221.17068.1|Name=mRNA_F-serratus_M_contig6221.17068.1|organism=Fucus serratus male|type=CDS|length=1236bp|location=Sequence derived from alignment at F-serratus_M_contig6221:21279..22669+ (Fucus serratus male)back to top |