mRNA_F-serratus_M_contig622.17055.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig622.17055.1 vs. uniprot
Match: A0A6H5JGJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ1_9PHAE) HSP 1 Score: 390 bits (1001), Expect = 1.180e-115 Identity = 233/530 (43.96%), Postives = 284/530 (53.58%), Query Frame = 3
Query: 525 VKKAVELWSQDSLELHRFHDKRVHVCDAKTLPEVLSQFWRLVAKCAQAKFSAMTDDRDYAAHVLFVVHQCDLLKDYGMMRQLD--------------------------------KVLDFCSGGCRDFGRTVTLQHYHPNFSLPPSQGHSDGRH-----DSKDLARVVNFSRSPYPVFGLTVAGGNAARSDPISASDRISRLRVDLEMVYNSVAGCSTDDSIDAHGSEHGTIPSSPQEVEKKTLGWLKKNSEDIRGRTSRESEVLPDCGRFLDGA------------------------------------KDDVVTSDLSTPEEVLSQIWSIVKQLQVETAP-----------------------------------------ILSAKEVSDSTTTAMVGVRKASSASGIPDGGAGEG--------GNNQREPLASKLLVAPRLHPFNSAQFESFVSNLAIALKQTPIMDRFEVEVYHPEYVFDGGVVDLIRRSPYPTLFIKHCGLKDELFRPSGLYRHTVPPLKLPSE 1748
+K+AVE W+++SL+L RF KRVH+C A+TLPEVLS+FW L A AQ K+SAM D DYAAH LFV +C LLK+Y MMR LD KVLDFCSGGC DFGRTVTLQHYHP+F LPPSQ S ++K L+R VNFSR+PYP FGLT A G+ RS+PI +D+I LR+DLE+VYNSVAG STDD +D+ G G IPSS +EV+ KTL WL +R + + G D A + +VTS L++PE++ + + + E AP +A E T + KA + + D GEG G ++ LAS LLVAPRLHPFN+AQFE+F LAIALKQ PI+DR EVEVYHPE V DGGV+DL RRSPYPTL +KHCGLKD LF PSG YRH +PPLKLP E
Sbjct: 115 IKQAVEAWAEESLDLRRFQGKRVHICKAETLPEVLSEFWSLAAMMAQEKYSAMAGDHDYAAHALFVAPRCALLKNYAMMRHLDPSLSEEIGTCFFIASSPEGLKAKTSRFVFARDKVLDFCSGGCSDFGRTVTLQHYHPDFVLPPSQTRSSSXXXXVDDNNKGLSRFVNFSRAPYPTFGLTAAAGSLVRSEPIEKTDKIGHLRLDLELVYNSVAGRSTDDCVDSGGGGRGGIPSSLEEVQDKTLDWLYSLPPALRAGQEGAVGGVEERGAAGDEAVSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXLTSSYEGGLVTSGLNSPEKLREEALPFLAAAEHEEAPPSPSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVEHWTKAATKL----KAGAQQDVADEDRGEGAAEAAVGAGVEAKKSLASTLLVAPRLHPFNAAQFENFARTLAIALKQAPIVDRIEVEVYHPELVCDGGVIDLDRRSPYPTLLLKHCGLKDVLFEPSGNYRHVLPPLKLPLE 640
BLAST of mRNA_F-serratus_M_contig622.17055.1 vs. uniprot
Match: D7G0L3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0L3_ECTSI) HSP 1 Score: 348 bits (892), Expect = 1.710e-102 Identity = 193/413 (46.73%), Postives = 233/413 (56.42%), Query Frame = 3
Query: 525 VKKAVELWSQDSLELHRFHDKRVHVCDAKTLPEVLSQFWRLVAKCAQAKFSAMTDDRDYAAHVLFVVHQCDLLKDYGMMRQLDKVLDFCSGGCRDFGRTVTLQHYHPNFSLPPSQGHSDGRH-----DSKDLARVVNFSRSPYPVFGLTVAGGNAARSDPISASDRISRLRVDLEMVYNSVAGCSTDDSIDAHGSEHGTIPSSPQEVEKKTLGWLKKNSEDIRGRTSRESEVLPDCGRFLDGAKDDVVTSDLSTPEEVLSQIWSIVKQLQVETAPILSAKEVSDSTTTAMVGVRKASSASGIPDGGAGEGGNNQREPLASKLLVAPRLHPFNSAQFESFVSNLAIALKQTPIMDRFEVEVYHPEYVFDGGVVDLIRRSPYPTLFIKHCGLKDELFRPSGLYRHTVPPLKLPSE 1748
+K+AVE W+ +SL+L RF KRVH+C A+TLPEVLS+FW L + AQ K+SAM DRDYAAH LFV +C LLKDY MMR LDKVLDFCSGGC DFGRTVTLQHYHP+F LPPSQ S ++K L+R VNFSR+PYP FGLT A G+ RS+PI +D+I LR+DLE+VYNSVAG STDD +D+HGS HGTIPSSP+EV+ K L WL + P +GA+ V + E V +T A+V S+ L + +P +VYHPE V DGGV+D+ RRSPYPTL +KHCGLKD LF PSG YRH +PPLKLP E
Sbjct: 127 IKQAVEAWADESLDLRRFQGKRVHICKAETLPEVLSEFWSLASMMAQEKYSAMAGDRDYAAHALFVAPRCALLKDYAMMRHLDKVLDFCSGGCSDFGRTVTLQHYHPDFVLPPSQTRSSSXXXXVDDNNKGLSRFVNFSRAPYPTFGLTAAAGSLVRSEPIEKTDKIGHLRLDLELVYNSVAGRSTDDCVDSHGSPHGTIPSSPEEVQDKALDWL--------------YSLPPALQAGQEGAEGSVEERGAAGDEAV---------------------------STAAIVNXXX-------------------XXXXXXXXXXXXXXXXXXXXLTSSYEGGLVTSGLNSP------EKVYHPELVCDGGVIDIDRRSPYPTLLLKHCGLKDVLFEPSGNYRHVLPPLKLPLE 473 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig622.17055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig622.17055.1 >prot_F-serratus_M_contig622.17055.1 ID=prot_F-serratus_M_contig622.17055.1|Name=mRNA_F-serratus_M_contig622.17055.1|organism=Fucus serratus male|type=polypeptide|length=532bp MRMKSRVGLALGLVASSACINGTVAFQQQPRWKTSSPGSFFKFSSTAPVFback to top mRNA from alignment at F-serratus_M_contig622:127329..148214- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig622.17055.1 ID=mRNA_F-serratus_M_contig622.17055.1|Name=mRNA_F-serratus_M_contig622.17055.1|organism=Fucus serratus male|type=mRNA|length=20886bp|location=Sequence derived from alignment at F-serratus_M_contig622:127329..148214- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig622:127329..148214- >mRNA_F-serratus_M_contig622.17055.1 ID=mRNA_F-serratus_M_contig622.17055.1|Name=mRNA_F-serratus_M_contig622.17055.1|organism=Fucus serratus male|type=CDS|length=3192bp|location=Sequence derived from alignment at F-serratus_M_contig622:127329..148214- (Fucus serratus male)back to top |