mRNA_F-serratus_M_contig622.17057.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig622.17057.1
Unique NamemRNA_F-serratus_M_contig622.17057.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig622.17057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig622contigF-serratus_M_contig622:191584..191992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size410
Cds size369
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931926.9796867-UTR-F-serratus_M_contig622:191583..1916231622931926.9796867-UTR-F-serratus_M_contig622:191583..191623Fucus serratus maleUTRF-serratus_M_contig622 191584..191623 +
1690964061.0657496-UTR-F-serratus_M_contig622:191583..1916231690964061.0657496-UTR-F-serratus_M_contig622:191583..191623Fucus serratus maleUTRF-serratus_M_contig622 191584..191623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931927.0087867-CDS-F-serratus_M_contig622:191623..1919921622931927.0087867-CDS-F-serratus_M_contig622:191623..191992Fucus serratus maleCDSF-serratus_M_contig622 191624..191992 +
1690964061.079367-CDS-F-serratus_M_contig622:191623..1919921690964061.079367-CDS-F-serratus_M_contig622:191623..191992Fucus serratus maleCDSF-serratus_M_contig622 191624..191992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig622.17057.1prot_F-serratus_M_contig622.17057.1Fucus serratus malepolypeptideF-serratus_M_contig622 191624..191992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig622.17057.1

>prot_F-serratus_M_contig622.17057.1 ID=prot_F-serratus_M_contig622.17057.1|Name=mRNA_F-serratus_M_contig622.17057.1|organism=Fucus serratus male|type=polypeptide|length=123bp
MSARALAKLPAYGESNCFRFGFAAHRSAVGGIYCGSFRQAKRNIFGQRGP
AQNSSTGPLLNDPVYIHGGASAEKRKVIPRNRFLSGVASPIVNHRPSDKD
ATDDISADGPPSSPVGLRPETAP
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mRNA from alignment at F-serratus_M_contig622:191584..191992+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig622.17057.1 ID=mRNA_F-serratus_M_contig622.17057.1|Name=mRNA_F-serratus_M_contig622.17057.1|organism=Fucus serratus male|type=mRNA|length=409bp|location=Sequence derived from alignment at F-serratus_M_contig622:191584..191992+ (Fucus serratus male)
CTCGTAAGAGGGTGCGTTTTCCTGTTAAGGATTTGGCACAATGTCCGCCA
GAGCTCTGGCAAAACTTCCTGCTTATGGCGAATCCAATTGCTTCCGGTTT
GGTTTTGCAGCCCATCGTTCAGCCGTGGGAGGTATCTACTGCGGCTCGTT
CCGGCAAGCGAAGCGCAATATTTTTGGGCAACGTGGACCAGCACAAAACA
GCAGTACCGGCCCACTGCTTAATGATCCGGTTTACATCCACGGTGGCGCA
AGCGCGGAAAAGAGGAAGGTCATACCCCGAAATCGTTTCTTATCCGGAGT
CGCATCACCCATCGTCAACCACCGTCCAAGTGACAAGGATGCAACTGATG
ACATTTCGGCAGACGGGCCTCCTTCTTCTCCGGTAGGACTCCGCCCAGAG
ACCGCTCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig622:191584..191992+

>mRNA_F-serratus_M_contig622.17057.1 ID=mRNA_F-serratus_M_contig622.17057.1|Name=mRNA_F-serratus_M_contig622.17057.1|organism=Fucus serratus male|type=CDS|length=738bp|location=Sequence derived from alignment at F-serratus_M_contig622:191584..191992+ (Fucus serratus male)
ATGTCCGCCAGAGCTCTGGCAAAACTTCCTGCTTATGGCGAATCCAATTG
CTTCCGGTTTGGTTTTGCAGCCCATCGTTCAGCCGTGGGAGGTATCTACT
GCGGCTCGTTCCGGCAAGCGAAGCGCAATATTTTTGGGCAACGTGGACCA
GCACAAAACAGCAGTACCGGCCCACTGCTTAATGATCCGGTTTACATCCA
CGGTGGCGCAAGCGCGGAAAAGAGGAAGGTCATACCCCGAAATCGTTTCT
TATCCGGAGTCGCATCACCCATCGTCAACCACCGTCCAAGTGACAAGGAT
GCAACTGATGACATTTCGGCAGACGGGCCTCCTTCTTCTCCGGTAGGACT
CCGCCCAGAGACCGCTCCGATGTCCGCCAGAGCTCTGGCAAAACTTCCTG
CTTATGGCGAATCCAATTGCTTCCGGTTTGGTTTTGCAGCCCATCGTTCA
GCCGTGGGAGGTATCTACTGCGGCTCGTTCCGGCAAGCGAAGCGCAATAT
TTTTGGGCAACGTGGACCAGCACAAAACAGCAGTACCGGCCCACTGCTTA
ATGATCCGGTTTACATCCACGGTGGCGCAAGCGCGGAAAAGAGGAAGGTC
ATACCCCGAAATCGTTTCTTATCCGGAGTCGCATCACCCATCGTCAACCA
CCGTCCAAGTGACAAGGATGCAACTGATGACATTTCGGCAGACGGGCCTC
CTTCTTCTCCGGTAGGACTCCGCCCAGAGACCGCTCCG
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