mRNA_F-serratus_M_contig622.17054.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig622.17054.1
Unique NamemRNA_F-serratus_M_contig622.17054.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig622.17054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig622contigF-serratus_M_contig622:122579..126367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1120
Cds size582
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931926.7223535-UTR-F-serratus_M_contig622:122578..1229591622931926.7223535-UTR-F-serratus_M_contig622:122578..122959Fucus serratus maleUTRF-serratus_M_contig622 122579..122959 +
1690964060.9837935-UTR-F-serratus_M_contig622:122578..1229591690964060.9837935-UTR-F-serratus_M_contig622:122578..122959Fucus serratus maleUTRF-serratus_M_contig622 122579..122959 +
1622931926.7351096-UTR-F-serratus_M_contig622:124488..1245351622931926.7351096-UTR-F-serratus_M_contig622:124488..124535Fucus serratus maleUTRF-serratus_M_contig622 124489..124535 +
1690964060.9954627-UTR-F-serratus_M_contig622:124488..1245351690964060.9954627-UTR-F-serratus_M_contig622:124488..124535Fucus serratus maleUTRF-serratus_M_contig622 124489..124535 +
1622931926.8362584-UTR-F-serratus_M_contig622:126257..1263671622931926.8362584-UTR-F-serratus_M_contig622:126257..126367Fucus serratus maleUTRF-serratus_M_contig622 126258..126367 +
1690964061.048212-UTR-F-serratus_M_contig622:126257..1263671690964061.048212-UTR-F-serratus_M_contig622:126257..126367Fucus serratus maleUTRF-serratus_M_contig622 126258..126367 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931926.7515173-CDS-F-serratus_M_contig622:124535..1246511622931926.7515173-CDS-F-serratus_M_contig622:124535..124651Fucus serratus maleCDSF-serratus_M_contig622 124536..124651 +
1690964061.0061183-CDS-F-serratus_M_contig622:124535..1246511690964061.0061183-CDS-F-serratus_M_contig622:124535..124651Fucus serratus maleCDSF-serratus_M_contig622 124536..124651 +
1622931926.7722585-CDS-F-serratus_M_contig622:124834..1250411622931926.7722585-CDS-F-serratus_M_contig622:124834..125041Fucus serratus maleCDSF-serratus_M_contig622 124835..125041 +
1690964061.0173461-CDS-F-serratus_M_contig622:124834..1250411690964061.0173461-CDS-F-serratus_M_contig622:124834..125041Fucus serratus maleCDSF-serratus_M_contig622 124835..125041 +
1622931926.7917798-CDS-F-serratus_M_contig622:125242..1253141622931926.7917798-CDS-F-serratus_M_contig622:125242..125314Fucus serratus maleCDSF-serratus_M_contig622 125243..125314 +
1690964061.0269608-CDS-F-serratus_M_contig622:125242..1253141690964061.0269608-CDS-F-serratus_M_contig622:125242..125314Fucus serratus maleCDSF-serratus_M_contig622 125243..125314 +
1622931926.8151057-CDS-F-serratus_M_contig622:126070..1262571622931926.8151057-CDS-F-serratus_M_contig622:126070..126257Fucus serratus maleCDSF-serratus_M_contig622 126071..126257 +
1690964061.0371013-CDS-F-serratus_M_contig622:126070..1262571690964061.0371013-CDS-F-serratus_M_contig622:126070..126257Fucus serratus maleCDSF-serratus_M_contig622 126071..126257 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig622.17054.1prot_F-serratus_M_contig622.17054.1Fucus serratus malepolypeptideF-serratus_M_contig622 124536..126257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig622.17054.1

>prot_F-serratus_M_contig622.17054.1 ID=prot_F-serratus_M_contig622.17054.1|Name=mRNA_F-serratus_M_contig622.17054.1|organism=Fucus serratus male|type=polypeptide|length=194bp
MSRRNGEGSQEWPNGERYNGHWKNDFPDGQGTWLRRSGRYSGELRAGVRH
GKGILKFRGGAEYDGDWVHGRMEGYGVYIWPDATIYKGEWEAGLRSGKGN
LTLPTGERYTGEWKAGRKHGKGVWRWSNGRTRRGEWNNDQLVGWTSAEMF
GDLSTLVTPQAPGVTVSRSSGSGNKKGQVKAKSPGNSPVRGLV*
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mRNA from alignment at F-serratus_M_contig622:122579..126367+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig622.17054.1 ID=mRNA_F-serratus_M_contig622.17054.1|Name=mRNA_F-serratus_M_contig622.17054.1|organism=Fucus serratus male|type=mRNA|length=3789bp|location=Sequence derived from alignment at F-serratus_M_contig622:122579..126367+ (Fucus serratus male)
CTATATCGCAGGCGGCGCAGCATGTCGTTATACCTTTAGCAGACTGCGCT
GTATGTCCATTATTTCAGGGTCATGTGCGAATCCTGAGATCGACCAGGGC
GGTGGTGTTTGTGGACTTTTTAGCTCCCCGTCTGCGAAAATATTTCCGGT
CGATCGGTATCTATCATCATCAATCAGAATCATTGATCGAAACGTCGACA
CAATGCCAACTCCTTCTTGAAATACTTCGTATTCTGTGTTATTATACTTT
TTTTATTTGGCAGGAGGGGCTTTACGACGGGGAGAAGAAAGGTGGTGTAC
GCGAGGGGCGAGGACAGCTCGTTTGGTCGAACGGGGACAAATATGCAGGC
GATTTCCACAACGGACTTCGCCATGGAAAAGGTGAACATTATGTGTCGCC
TCCTCGCCGAAGCGACGGTGGAGTTTTTTATAATAGATACAATTGGCAGA
AGAGTTTGAAAGGAAAATACACTCTAACTCTGTACTGCAATTTTGTTCAA
GAATCACGTACGTACAGAGTCGAGTGCTGAGTAACAACTTAACTACTTAC
TGCAGGCTCTTTGTCCACTGTTACTAATGGTATAGTCTATCAATTACGTA
CATCGATAGTACAGCAGTAAATAACCAGGACAGCTTAGTTCGAAGTGCAA
CAGTAGTACTACAGAAAATAGTACCTAGACTGAGCATcccTGTTGTTGCA
TGTTTTAATGTAGACTATGTCTAGAGATCTCTCACAAAAATATTATGTTT
ATTAATGTAGCATACATCTTACCCTTGCTTTCGTAAATACAAATGACTTG
TAGATTTCCTTCATCGAAACAACAATAATAATGTATTAATGTAATTGTTG
TACGGACAAAATATCGATGGGTCTCGCCCCGATGTTATACTGTTGACCCT
ATGCGACTACAGGAGAACCCAATTTAATACTGGTACCATGAAGCGCTTTT
GTCCCTACAGCCAATCAATGTTCCACCCACCTAAATCTCTTCACATTCCC
CCCGAGGGTGTATTGGTATTGATGATGGTTTAGATGCGTTCAGAGTTGGA
CCCCAATATGCATACCAAACAAAATATTACGTATATAATGTCAGATTTTT
CATTGAACCCGCCCCCAAAGCGCATACTTTTATACAGTAGTAATGCTGGG
TACTCTTTTTTGAAGAAAATACAGAACGCACCTAGACCTTCTTTTGTTCC
GCATTCATTCGCTCTATTATAGTCTACTACTTCGTGTTTGAAGAAAAAAT
TGAACCCATCTAGACCTTCTTTTGAGCATCCCCCGGTCAGGGGGGAAAAT
TTCAAAACGTTTAGGTGGGATCATCATAGGCTGCAAATACAAACCTTTTC
GTGGCATTTAAACGGGTTCCCCTATGGTAGTAACATTGGGTCAACAGTAT
AATGTCGGGGAGAAACCCACCGTTGAGCTGTACACTTACATCAATCGCCC
ATGCAGGGACACCAGACAAAAACAATACAAATACATTTTTTACCTAGTAC
ATAATATAATAGGTTTATAAAAAtATACAGTGATTCTTTTGTTTACTGCG
GTACAGTATCCAAAGTAATCAACCCTGGTGGGTGCAGTAAGTAGTACACT
AAAACCTTATTATAACTTGTAGCAACATGTTTCACGAGGAATTAGAAGAG
AGGAGCGGCGTGGTTCGTGTCATACTAGAACGAAGCAAGTTATTCTTTGA
ACGAGCCATTATCACCACAAAGTAGTCACAACCGTGAAAACATACAATTG
TGCAGCTACAAGTATCGTCTCTTTCGCTCTCTCTGCACACAGACAGTTTT
TTTGTGCTCTGTAGGGCGTTGAGTTCTTGGATATTTCCTATTGAGACGGT
GCGCGGACGATGCGTGCGTTGCGTGTGGTTCCACGGCGCGACTTGCGACA
TCGCGCGAAGGTGTATTCGAAACGAAGCACGGCATTAGGTACGAGGGCTG
TTGGCGAATGAGTCGCCGGAACGGTGAAGGCAGCCAGGAGTGGCCCAACG
GGGAGCGCTACAATGGGCACTGGAAAAACGATTTTCCGGACGGTCAAGGG
ACCTGGCTTCGACGCAGTGGGAGGTGGATATTTCTTCCCAGTCTCGAGGG
GGGTTTTCGACTAACCTAAACAGCTCTCGAGCTTGATTGAGACTCAGATA
CACCCACACGTTTAGTTGATCGGATTGAGGGGGGCTGCTATCTTGTCGTT
ACTCTACGGTCCGCGCAACCTCGGGATCTATGTCCCCTTCTGCCTCCTGC
TGCCAGATACTCGGGCGAGCTTCGCGCCGGCGTGAGGCACGGCAAGGGAA
TTCTGAAGTTCAGAGGAGGAGCAGAGTACGACGGCGACTGGGTTCACGGA
CGCATGGAGGGGTACGGTGTGTACATATGGCCTGACGCGACAATATATAA
GGGCGAATGGGAGGCAGGATTGCGCTCGGGGAAAGGAAACTTGACACTCC
CGACCGGAGAGAGGTGAATAAACAGAGGGTGATGAGTGCTTCCGTTACGA
CCGTGGCTACAACTCGATGGATAATAACCTCTCATGCCGTGTGTGGCGGA
ATTAATCGGTCTCGCGGATGGACTCGCCGTGCTCCCCTAGAAAATGAACA
CCCAAGAGAAGTTCCCTTCTCACAAAACAATGGCGCCCTAATCCCCCCTA
TCATTGGTAAAAAGGTATACCGGCGAGTGGAAAGCAGGGCGCAAACATGG
CAAGGGTGTTTGGCGATGGAGCAATGGGCGCACAAGGTAATAATCATGAT
CGACCTAGGATACCAATGCCGCCGCGGAAGTCGGGAGGATTCCTGTAAGT
AAGCACCAGATTGAGTCTGACTGAGTGTGGAGATGAGCAGGCTGATGCGG
GTCGGGACTGCCGTAACCGTCTCGAGATACCAATTACCACGGGCGCGAAC
GGGGACAGGGAATTATTAATATGTTCCCTGTTCAGCTGACCACGAGCAGG
ATTGGCAACCTTACCCGGTCGATCCTTACTCTTGACCATACATACATACC
ATTCTCCCGCGATAAATTTTGCTTTGAACGAGTCATGCAAAGCGTGTCTC
GCTCGCAACCTGCGGGTAGCACGTTACATCTGTTTATTTGTGTGTCACTT
ACGGCCAATGAACATCAACGTGCCAGGTGACCAATCCCATCTACTGCAAC
GTTGCCATCCTGCCTGTGGTCACGAAGGATTCTCCCATCTCTCCCCGGTT
CTCGCCTTCGATTTCCTATCACGATACAAGTTCAGTACTCTTACACCTTC
GCAACTAGTGTTTGAATTATGCTTACTCACCCTCTCAAGTTTTTAGCTCC
GGAAGCCGGAACTGGTTTTTCTTTAAAAAAAATGGTACTGCTGTCAAGAA
TCGAACTCATGACCACGCACTATTAATAGTCTATAATTCTCAATCAATCA
ATATTAAATACATGGTGATCCGTACGAGGTTATGACTACTGTACTCCACT
CGGGCGACGTCATATCATGAATTAATTTGACGTTGTCGACAGGCGCGGCG
AATGGAACAACGACCAGTTGGTGGGCTGGACTAGTGCAGAAATGTTTGGG
GATCTATCTACTCTGGTCACTCCTCAAGCCCCGGGGGTAACCGTAAGCCG
TAGCAGCGGCTCCGGTAACAAAAAAGGCCAAGTCAAGGCGAAATCTCCCG
GGAATAGCCCGGTGCGGGGCCTCGTGTAGTCAGGCTGGAGAGTCTGACAT
GGCATAAAAGGCATTAAGGATCTTAGCCAAGGTTTTCATATTTGGTCAAG
GATTACATTTACTGTTCTCACATCGTGACCATCGTCATA
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Coding sequence (CDS) from alignment at F-serratus_M_contig622:122579..126367+

>mRNA_F-serratus_M_contig622.17054.1 ID=mRNA_F-serratus_M_contig622.17054.1|Name=mRNA_F-serratus_M_contig622.17054.1|organism=Fucus serratus male|type=CDS|length=1164bp|location=Sequence derived from alignment at F-serratus_M_contig622:122579..126367+ (Fucus serratus male)
ATGAGTCGCCGGAACGGTGAAGGCAGCCAGGAGTGGCCCAACGGGGAGCG
CTACAATGGGCACTGGAAAAACGATTTTCCGGACGGTCAAGGGACCTGGC
TTCGACGCAGTGGGAGATGAGTCGCCGGAACGGTGAAGGCAGCCAGGAGT
GGCCCAACGGGGAGCGCTACAATGGGCACTGGAAAAACGATTTTCCGGAC
GGTCAAGGGACCTGGCTTCGACGCAGTGGGAGATACTCGGGCGAGCTTCG
CGCCGGCGTGAGGCACGGCAAGGGAATTCTGAAGTTCAGAGGAGGAGCAG
AGTACGACGGCGACTGGGTTCACGGACGCATGGAGGGGTACGGTGTGTAC
ATATGGCCTGACGCGACAATATATAAGGGCGAATGGGAGGCAGGATTGCG
CTCGGGGAAAGGAAACTTGACACTCCCGACCGGAGAGAGATACTCGGGCG
AGCTTCGCGCCGGCGTGAGGCACGGCAAGGGAATTCTGAAGTTCAGAGGA
GGAGCAGAGTACGACGGCGACTGGGTTCACGGACGCATGGAGGGGTACGG
TGTGTACATATGGCCTGACGCGACAATATATAAGGGCGAATGGGAGGCAG
GATTGCGCTCGGGGAAAGGAAACTTGACACTCCCGACCGGAGAGAGGTAT
ACCGGCGAGTGGAAAGCAGGGCGCAAACATGGCAAGGGTGTTTGGCGATG
GAGCAATGGGCGCACAAGGTATACCGGCGAGTGGAAAGCAGGGCGCAAAC
ATGGCAAGGGTGTTTGGCGATGGAGCAATGGGCGCACAAGGCGCGGCGAA
TGGAACAACGACCAGTTGGTGGGCTGGACTAGTGCAGAAATGTTTGGGGA
TCTATCTACTCTGGTCACTCCTCAAGCCCCGGGGGTAACCGTAAGCCGTA
GCAGCGGCTCCGGTAACAAAAAAGGCCAAGTCAAGGCGAAATCTCCCGGG
AATAGCCCGGTGCGGGGCCTCGTGTAGGCGCGGCGAATGGAACAACGACC
AGTTGGTGGGCTGGACTAGTGCAGAAATGTTTGGGGATCTATCTACTCTG
GTCACTCCTCAAGCCCCGGGGGTAACCGTAAGCCGTAGCAGCGGCTCCGG
TAACAAAAAAGGCCAAGTCAAGGCGAAATCTCCCGGGAATAGCCCGGTGC
GGGGCCTCGTGTAG
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