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Homology
BLAST of mRNA_F-serratus_M_contig6219.17050.1 vs. uniprot
Match: D7G4J8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J8_ECTSI) HSP 1 Score: 231 bits (590), Expect = 5.750e-69 Identity = 134/213 (62.91%), Postives = 159/213 (74.65%), Query Frame = 1
Query: 1 KQYFNCFGLDDTEYLPEVEGADLEIPWAAGXXXXXXXSSMAADTGLAVALGHAVAAAVALTHVIFFVLLFLNIEPVPVRGYMYMRGLGLMTALSSFYLIFTGVVSFFFGVKDSLDSYMESSSGLRPSWAYILTVVDVILMMLVATKACHDDQVDAAIATPQYTSSSRNEDTVKRASGQLLHLRSKSSDTILEGSAT-NLP----TSAPKATTG 624
K+ CFGL + E E E AG SM ADTGLAVALGHAVAAAVA H++FFVLL+ NI+P PVRGY+YMRGLGLM+AL+SFYL+FT VVSFFF +K SLD M +S+GLRPSWAY+LTV+DV +M++V AC D++VDAAIATPQYTSSSR+EDTVKRA+G+LLHLRSKS DT E S + N P +SAPKAT G
Sbjct: 66 KEDSGCFGLAEKELEDETEAV------LAGGR------SMDADTGLAVALGHAVAAAVASIHILFFVLLYFNIDPAPVRGYLYMRGLGLMSALTSFYLLFTCVVSFFFAIKGSLDVNMSTSAGLRPSWAYVLTVIDVTIMVVVGMLACQDEEVDAAIATPQYTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASASSAPKATVG 266
BLAST of mRNA_F-serratus_M_contig6219.17050.1 vs. uniprot
Match: A0A6H5JHQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ9_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 1.910e-13 Identity = 52/96 (54.17%), Postives = 63/96 (65.62%), Query Frame = 1
Query: 400 VVDVILMMLVATKACHDDQVDAAIATPQ----------------YTSSSRNEDTVKRASGQLLHLRSKSSDTILEGSAT-NLP----TSAPKATTG 624
V+DV +M++V AC D++VDAAIATPQ YTSSSR+EDTVKRA+G+LLHLRSKS DT E S + N P +SAPKAT G
Sbjct: 12 VIDVTIMVVVGMLACQDEEVDAAIATPQIDTPRAVRLNSYLVFQYTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASASSAPKATVG 107
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | signal anchor |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-07_000360.1 |
| Exons | 4 |
| Model size | 776 |
| Cds size | 774 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622931926.534688-CDS-F-serratus_M_contig6219:19175..19393 | 1622931926.534688-CDS-F-serratus_M_contig6219:19175..19393 | Fucus serratus male | CDS | F-serratus_M_contig6219 19176..19393 + |
| 1690964060.9083705-CDS-F-serratus_M_contig6219:19175..19393 | 1690964060.9083705-CDS-F-serratus_M_contig6219:19175..19393 | Fucus serratus male | CDS | F-serratus_M_contig6219 19176..19393 + |
| 1622931926.5574887-CDS-F-serratus_M_contig6219:21020..21201 | 1622931926.5574887-CDS-F-serratus_M_contig6219:21020..21201 | Fucus serratus male | CDS | F-serratus_M_contig6219 21021..21201 + |
| 1690964060.9237065-CDS-F-serratus_M_contig6219:21020..21201 | 1690964060.9237065-CDS-F-serratus_M_contig6219:21020..21201 | Fucus serratus male | CDS | F-serratus_M_contig6219 21021..21201 + |
| 1622931926.57877-CDS-F-serratus_M_contig6219:21877..21961 | 1622931926.57877-CDS-F-serratus_M_contig6219:21877..21961 | Fucus serratus male | CDS | F-serratus_M_contig6219 21878..21961 + |
| 1690964060.9347472-CDS-F-serratus_M_contig6219:21877..21961 | 1690964060.9347472-CDS-F-serratus_M_contig6219:21877..21961 | Fucus serratus male | CDS | F-serratus_M_contig6219 21878..21961 + |
| 1622931926.6004508-CDS-F-serratus_M_contig6219:25402..25693 | 1622931926.6004508-CDS-F-serratus_M_contig6219:25402..25693 | Fucus serratus male | CDS | F-serratus_M_contig6219 25403..25693 + |
| 1690964060.9458232-CDS-F-serratus_M_contig6219:25402..25693 | 1690964060.9458232-CDS-F-serratus_M_contig6219:25402..25693 | Fucus serratus male | CDS | F-serratus_M_contig6219 25403..25693 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6219.17050.1 >prot_F-serratus_M_contig6219.17050.1 ID=prot_F-serratus_M_contig6219.17050.1|Name=mRNA_F-serratus_M_contig6219.17050.1|organism=Fucus serratus male|type=polypeptide|length=258bp
KQYFNCFGLDDTEYLPEVEGADLEIPWAAGEIPWAAGSSMAADTGLAVAL GHAVAAAVALTHVIFFVLLFLNIEPVPVRGYMYMRGLGLMTALSSFYLIF TGVVSFFFGVKDSLDSYMESSSGLRPSWAYILTVVDVILMMLVATKACHD DQVDAAIATPQYTSSSRNEDTVKRASGQLLHLRSKSSDTILEGSATNLPT SAPKATTGVAGNSDGDDVELGVGGRLPLVSVSSVSLSLIGGSRAAGPSIT TTAGAAGA back to topmRNA from alignment at F-serratus_M_contig6219:19176..25694+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig6219.17050.1 ID=mRNA_F-serratus_M_contig6219.17050.1|Name=mRNA_F-serratus_M_contig6219.17050.1|organism=Fucus serratus male|type=mRNA|length=6519bp|location=Sequence derived from alignment at F-serratus_M_contig6219:19176..25694+ (Fucus serratus male) AAGCAATATTTCAACTGTTTTGGGCTGGACGATACTGAGTACCTTCCCGA
GGTCGAAGGAGCTGATTTAGAAATACCCTGGGCAGCGGGCGAAATACCCT
GGGCAGCGGGCAGTTCGATGGCGGCGGATACTGGCCTTGCGGTGGCACTG
GGTCATGCGGTTGCTGCTGCGGTAGCCCTCACTCATGTGATATTTTTTGT
GCTCCTGTTCCTAAACATGTGAGTCATACTGCACTCTTACCAGTATATAT
TAATAGTACTCCGGAGTATTATTCATAGAGATAAATGATACTATACTATC
CTACGTATGCCTCAATATTTGTACTTGTTAACAGTATGGAGTGTTTTTCG
GACACGCGAGGATTTTCGTATTGTTAAAATATAGTGTATGTGGGTGTGTG
TGTGTGTGTGTATGCATGTGTGTATGTATGCATACATGCAATGTATGTAT
GTTTGTAGGTATGTATATTCGCGCCTGAGAATTTAGTCTCCCGAGACGGG
TTCGGCTGCTCATCTCTCGTGCGTACTTAGGGGATTCCTCCCGAGTTCCG
CGGCGGTGTCCATTTATTTATACCACCACACGCCATCGGGTCAGTCCCGA
GTTCATCGGGTCCGCAATTGCGTACCGATGGCGTTCACTGCCGAGAGTCC
GTCGGCACAGGGCCAGTAAACTTCAAGGTAGTTCCGAACGAGTGCTGCCT
TGACAGGTCACCATGGACCAATTAGTATACGCCTCTCTTTCCCACACCCA
CTACTATATTATTGGTATGAAGTATGAAAGGGTTATATTAATAGTCATAG
CATGTTGAAAGTACCTTACTATTATTGAGTGTATTGAACTGGTGGGAAGA
GAACGAGGGATTTTGATTGGTTAGACGAATACTTGTACTTGTACTCGTAC
TTGGAGTTATTTTTGATACTAAAAATAGTACATTACTAATAATCGTACCA
ATAATACTGTTCTAGTAGTAGGTGCAGTATCAATACATTAGTAGGCTATA
TCACTAAACCCGCCTTATCGTGATAGGTACATTAATATGTGAATATGTGA
ATATGTTGATATGTTAATAAATACATCGAGTGCTCGAACTTGTGTTGGAA
GGGTCGGAATCCATTCGCTTGTTGCGCACATATCAAACTCTTGAAGAATC
AAGTGATTTTTGACACGGTAGGTGAAATATGAAGAGTAAAAATAGCTATA
TTTGCAATAGATTTCCTTTTTTTTATTTATCTGTTACATTATTCATATAA
TGGGTTTTTGTTTTCTTGTTACTTTTAAGATCTTTGGGATGATCGTTTTA
ATAAAATTAGAAGAAAAAAAAAAAGCCGGGCGGGTATGATGTCATGTGAC
TCTGATTGGTTGAAACAAGACACATGTTCCTCAAGAGGAGTCAGTGCGTT
TCTTTCTGTCCTAGAAATGGTCCTACGTCCCCCAAAACTCGCTATAGGGT
TATAATATTTACATCATTATTAATATAATATAATATAATATAACATAACA
GTACGTCTTGGTAATACTGCAGTCGGCGCTATGATGCTGTTTCCGTCGTC
CGATCATTGGATTCGGTTTGCTTCGGTTTGTCATCCTCCCACATTCCGCT
TTTTTTTTTTTTTTCGGGCGTTCGGATTTTTGCTCCCCCCAGCAGCTGTT
CTCGGTTGTTGGGGTCCAGATTTTGATTTTTGCTCTTCTCCATTCGTACT
TCATAAAATAATTCTCGTAGCTACTGCACTACTACTGTACATGATGTAAC
ATACCAATATATTTCCGTACGCGGATGTGTGTGTGTGTAACCACGCAATC
CGGCCCTGTCATCCTAGTGAGGGGGTGTGTGTGTGCGTGCCTCAGAGAAC
CCGTTCCGGTCCGAGGCTACATGTACATGAGGGGGCTGGGTCTCATGACG
GCCCTGTCGAGCTTCTACCTAATCTTTACGGGCGTGGTTTCGTTTTTCTT
CGGCGTGAAGGACAGCCTGGACTCCTATATGGAGAGCTCCTCCGGCCTCA
GGCCTTCGTGGGCATACATTCTGACCGTGAGAAACAATATGCTATGCGCA
ATACAACAGTATACACTTATCTAATATCATCCGATACACTATACTGTTCT
ACACACTATCGTATCGTTTCTATACACTACTATACTGTTCCATACACTTA
TCACATCATCCTATACACCACACACTATCATATTATATCATGCACCATAC
ACTATCATATCATCCCATACACCATACACTATCACATGATCCTATACTCT
ATACGGTAGGTACACTATCATAGCTAATAATATTTAAAACTACCAGTACA
AAAAACAGTATTTAGTGGTTGGTGGTGTACTGCAGGAAACGCTCCATATA
TAATTGATAGGCAGATGTCGATTATTTGAGGTCTCGTATATGTGAGAGCG
CTATCAACTGTGTCGCACAATATGCCTAGTGGGACGATTCCTAAAAATAG
AATATGCTCTTGGTGTGCTGTGTGTGTGTGTGTGTTTTTTTTTGTCGTTA
GTCTTGAGTATGTTTTAGAAATGATCTTGACGAATTAAACCATTCAGAAA
CTAAAGTTTTGGGTCGTGTTGAATCGCGCCTTTGCCACCAACGACCTCAA
GCGGCAGGACGCTCCATCGCTCGAAAGCTCTATCGCCACAGAATCCCCCC
CCCCCCTCCCCTGCCTTGCTGTTGCGTCTTGACGATGTTGCCCCCCTCGT
AGGTGGTAGATGTGATCTTGATGATGTTGGTCGCGACCAAGGCCTGCCAC
GATGATCAGGTCGATGCGGCGATCGCCACCCCGCAGGTGCGGGAAGTTTA
CGCGAACATCAACATAAAGACGAGATGATGATAAATACTTGGTAATAACT
AACCTTAGTCATTCAAATTTGCGTCGTAGTTCTCACTAAAAAATCCAGAA
CGTGCGCTAAACTGTAGTGATAGCTCTAACGAGGATTAAAAATTAGTATC
AGCAGTTAACGCCGCCGCCCCCCCCCCCGACGGTATATGCTACGTACTCC
GAGGATATGCTATATACAACATGTAACACATTAAAAACTGACGGAAGTGC
TATATAACGGCGGAAACGTTTTCTGCGATCGTTAATCGAACATTGATGGA
GGAATTCGTAGGATCATTGTCAAGAACAGCATGCTTGACAATCAATAGGA
TGAGGGATGAGGGAGGGATGTATTTGTGGAAAATCTGAGGACTCTTGTAG
GTACAAATTAGAAACAGTAGTTGAAGCTCCGATCCCGTGCTCCCCCCCCC
TCCCCCCTCCTCAAAAAGCCTCTTTTTTATTTACAAGTTGAAATTTCCCC
ACGAAGTGTTGGAAAAAAAGAGAAGGAAGTACTATAATGTTTGCAGGGGC
CGCGTGAAGGTGGTAGAGTACAATGACTTGATTTAAAAATAATACGAACA
TACCTGGTACACTATTAGTGCTATACCCAGTTTTATGTATCTCAATTGTA
CCTGGAAGCTAGACGCTCTAGTGATGACATGTACAAATTGCAGGGAGCTC
TTAACGGTAGGCACAGAGCTCAATTGACTATTAATACATACTGGTAGTCT
ACAAGAGTGGAATGGTTGGGAATCACATCGGCTGGGGCGCCTTCTGGTCT
GTATACCTCTGATGCACGAGACCCTTGCCCTCGCTTTTGAAATGATGTTC
GGGGAAGCATCTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCGATGATTAG
CCTCCTCTTTCCCCCGGGGGCTAAACGTCTCTTTCCCCCAGGGATAGATT
CCTCTTCCGCCAGGATGTATACTGTCCCCCGAGTTAGACTTTTACTTTAC
GGGGGGGGGGGGGGTATATATTCAATATATTCCTTTCCCTTCTCCCTGGA
ATAAAAGAAACACACACACCCTACCGTCAAAAATCATGTATATGCTATAA
ATGGGGAGAAAGTTTCTCTTCCTGATTTTGATGTTTTGATCGTGACGGCT
ATTGTACTGCAGTTAGTGGCGTCTGCCTGGTTGtGGGAAGAAAAAAAAAA
GGGGTTGATCACGTCGTCCGTGGAGAAATGCACTTGGGACATAATATGTA
CCGTACAACCGGTTCTCTTAGCTCACTCCGCCAGCTTTCTGTGTCCGCAC
TAATGTATAGACCATCATATATACAAATACATCATATATCATCATATGTA
CCACCATCGCCACGGAATCCCCCGGTCGCCCCGTCGACCTCATCGCCGTG
GCACGCCCTTGTCGCCACCAACACGAGGAGGACTACGTCCACCTCCTACG
AGGGGGGCAGCGTCGTCAAGACGCAACAGCAAGGAAGGAGAGGGGGCGGG
GGTTCCGTTAGAGCTATCACTACAGTTTAGCACACGGTATGGCTTTTTCG
ATGAGAATTACCACACGGAAATGAATGGCTATCATAATGTTAGTTATTAC
GAAGTATTTATCATCATCTCGTCTTAATGTTGAATGTTGGCGGACTCTTC
CTGCACGTGCGGAGTAGGGATCGCCGCGTCCACCTCATCGTCGTGGCACG
CCTTCGTTGCGATCAACATCATCAAGACCACGTTTATTACCTAGGAGAGG
GGCAACATCGTCAAGATGCAACAGCAAGGAAGGGGGGAAGGGGGGGGGGG
GATTCTGTGGCGATCGAGCTTTCGACCATCTTATCGAAAGCTCCATCACC
ACGGAATCCCCCCCTCCCCTCCCCTTCCTTGCTGTTGCGTCTTGGTGATG
TTGCCCCCTCGTAGGTGGTGGATGTCGTCGTCATGATATTGGTGGCCACG
AAGGCGTGCCACGGCGAGGAGGTGGACGCGGCGATCGCCACTCCGCAGGT
ACAGGAATAGTCCACGACCATTAACATTAAGACATGATGATGACAAATAC
TTGTTAATTACTAACCTTATGATATCCATTTAATTTTGTGTGGTAGTTCT
CATCGAAAAAGCCAGACCGTGTGCTAAAACTGTAGTGATAGCTCTAACAA
TTAGTATCGGTAGTTAACGCGCCCCCCCCCCCCCCCCCCCCACGGTATAC
GCTATGTATATGCTATATACGACATGTAACAGTAAACACTGACGGAGGTG
CTATACAATGGCGGAAACGTTTTCTGCGATCGTTCATCGAGCGGTGATGG
ACGAATTCGTAGGATCATTGACAAGAACAGCATGTTTGACAAATCAAAAC
GATGAGGCATGAGGGAGGGATGTATTTGTGGAAAATATGAGGACTCTTGT
AGGTACACTTGAGAAACAGTAGTTGAAGCTCCGTTCCCGTGCTTCCCCCC
CCCCCCATCCCCCTCCCCCTCCTCAAAAAGCCTGCTTTTTATTTACAAGT
TGAAATTTCCCCACGAAGTGTTGGAAAAAGAGAAGGAAGTACTATAATGT
TTGCAGAGGCTGCGTGAAGGTGGTACGTTACAATGACTTGGCTTAAAATA
ATACTAACATACCTGGTACACCATTAATACTATACACAGTTTTTTGTTTC
TTGATTGTACGTGGGAGCTAGAAGCTCTAGTGATGACATATACAAATTGC
AGAGAGCTCCTAACGCTAGGCACAGAGCTCATTGACTATTAACACATACC
AGGTAGTCTACAATAGTGGGTTGGTTGGGAATCACATCGGCTGGGGCGCC
TTCTGGTCTAAACACCTCTGGCGCACGAGATCTTTGCCCTCGCTTTTAAA
ATGATGTTCGGGGTGGCATCCCGCCCCCCCCTCCCCCCCCCGCCCCCCCG
AGGATAAACCTCATCTTTCCCCCGGGGCTAAACGTCATGTATATGCTATA
TATGGGGAGAAAGTTTCTCTTCCTGCTTTTGATGTTTTGATCGTGACGGC
TATTGTACTGCAGTTAGTGGCGTCTGCCTGGTTGTGGAAAAAAAAAACAA
GGAGTTGATCACGTCGTGCGTGGAGAGATGGACTTGGGACATAATATGTA
CTGTACGACCGCTCTCTTAGCTCACTCCGCCACCTTTCTGTGTCCGCACT
AATGTATAGACCATCATTTATACCATCATGTATACTGGTACCATTTATAT
ATATATCGTCATATGGACCACCATTGAGGCACGTCATTACTACCATCTCC
CATCATATTTAAGCCTAATCACTTCAATTGCAATATTCGAGCTCTCCTGA
AGACAATGTCAAGAGCTTTTTCGCTGTATGAGTATCATCGTGCGCTTTTA
ATTCATTTATTTATTTTTTCGCGAACCTAACCGAATACCGACAAACCGAA
CGACCGATTTACCGAATGTGGCCGCAGTACACCTCTTCGTCACGGAACGA
AGACACCGTCAAGAGAGCGAGCGGGCAACTCCTGCACCTGCGTTCTAAAT
CGAGCGATACCATCCTCGAAGGCTCCGCCACGAACCTGCCCACGTCTGCC
CCCAAGGCAACGACCGGCGTTGCAGGCAACAGTGACGGTGACGATGTGGA
ACTGGGCGTGGGCGGTCGTCTCCCCCTAGTCTCAGTATCGAGCGTATCTC
TTTCACTCATCGGAGGTTCGAGGGCTGCAGGACCCTCGATTACGACCACT
GCCGGTGCTGCTGGGGCGG back to topCoding sequence (CDS) from alignment at F-serratus_M_contig6219:19176..25694+ >mRNA_F-serratus_M_contig6219.17050.1 ID=mRNA_F-serratus_M_contig6219.17050.1|Name=mRNA_F-serratus_M_contig6219.17050.1|organism=Fucus serratus male|type=CDS|length=1548bp|location=Sequence derived from alignment at F-serratus_M_contig6219:19176..25694+ (Fucus serratus male) AAGCAATATTTCAACTGTTTTGGGCTGGACGATACTGAGTACCTTCCCGA GGTCGAAGGAGCTGATTTAGAAATACCCTGGGCAGCGGGCGAAATACCCT GGGCAGCGGGCAGTTCGATGGCGGCGGATACTGGCCTTGCGGTGGCACTG GGTCATGCGGTTGCTGCTGCGGTAGCCCTCACTCATGTGATATTTTTTGT GCTCCTGTTCCTAAACATAAGCAATATTTCAACTGTTTTGGGCTGGACGA TACTGAGTACCTTCCCGAGGTCGAAGGAGCTGATTTAGAAATACCCTGGG CAGCGGGCGAAATACCCTGGGCAGCGGGCAGTTCGATGGCGGCGGATACT GGCCTTGCGGTGGCACTGGGTCATGCGGTTGCTGCTGCGGTAGCCCTCAC TCATGTGATATTTTTTGTGCTCCTGTTCCTAAACATAGAACCCGTTCCGG TCCGAGGCTACATGTACATGAGGGGGCTGGGTCTCATGACGGCCCTGTCG AGCTTCTACCTAATCTTTACGGGCGTGGTTTCGTTTTTCTTCGGCGTGAA GGACAGCCTGGACTCCTATATGGAGAGCTCCTCCGGCCTCAGGCCTTCGT GGGCATACATTCTGACCAGAACCCGTTCCGGTCCGAGGCTACATGTACAT GAGGGGGCTGGGTCTCATGACGGCCCTGTCGAGCTTCTACCTAATCTTTA CGGGCGTGGTTTCGTTTTTCTTCGGCGTGAAGGACAGCCTGGACTCCTAT ATGGAGAGCTCCTCCGGCCTCAGGCCTTCGTGGGCATACATTCTGACCGT GGTAGATGTGATCTTGATGATGTTGGTCGCGACCAAGGCCTGCCACGATG ATCAGGTCGATGCGGCGATCGCCACCCCGCAGGTGGTAGATGTGATCTTG ATGATGTTGGTCGCGACCAAGGCCTGCCACGATGATCAGGTCGATGCGGC GATCGCCACCCCGCAGTACACCTCTTCGTCACGGAACGAAGACACCGTCA AGAGAGCGAGCGGGCAACTCCTGCACCTGCGTTCTAAATCGAGCGATACC ATCCTCGAAGGCTCCGCCACGAACCTGCCCACGTCTGCCCCCAAGGCAAC GACCGGCGTTGCAGGCAACAGTGACGGTGACGATGTGGAACTGGGCGTGG GCGGTCGTCTCCCCCTAGTCTCAGTATCGAGCGTATCTCTTTCACTCATC GGAGGTTCGAGGGCTGCAGGACCCTCGATTACGACCACTGCCGGTGCTGC TGGGGCGTACACCTCTTCGTCACGGAACGAAGACACCGTCAAGAGAGCGA GCGGGCAACTCCTGCACCTGCGTTCTAAATCGAGCGATACCATCCTCGAA GGCTCCGCCACGAACCTGCCCACGTCTGCCCCCAAGGCAACGACCGGCGT TGCAGGCAACAGTGACGGTGACGATGTGGAACTGGGCGTGGGCGGTCGTC TCCCCCTAGTCTCAGTATCGAGCGTATCTCTTTCACTCATCGGAGGTTCG AGGGCTGCAGGACCCTCGATTACGACCACTGCCGGTGCTGCTGGGGCG back to top
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