mRNA_F-serratus_M_contig62.17021.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig62.17021.1
Unique NamemRNA_F-serratus_M_contig62.17021.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig62.17021.1 vs. uniprot
Match: D7FX37_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX37_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 3.960e-11
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 3 
Query:    3 MEKKWACQSMCTWAIKDGCDSIGISYSMPEVPIRVKQK 116
            MEKKWACQSMCTWAIK  CDS+ ISY +PEVP+++K+K
Sbjct: 1094 MEKKWACQSMCTWAIKSACDSLNISYFLPEVPVQMKKK 1131
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BLAST of mRNA_F-serratus_M_contig62.17021.1 vs. uniprot
Match: A0A6H5JDS1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS1_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.970e-11
Identity = 27/38 (71.05%), Postives = 34/38 (89.47%), Query Frame = 3 
Query:    3 MEKKWACQSMCTWAIKDGCDSIGISYSMPEVPIRVKQK 116
            MEKKWACQSMCTWAIK  CDS+ ISY +PE+P+++K+K
Sbjct: 1107 MEKKWACQSMCTWAIKSACDSLNISYFLPEIPVQMKEK 1144
[Close]
BLAST of mRNA_F-serratus_M_contig62.17021.1 vs. uniprot
Match: A0A6H5JBC1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC1_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.970e-11
Identity = 28/39 (71.79%), Postives = 35/39 (89.74%), Query Frame = 3 
Query:    3 MEKKWACQSMCTWAIKDGCDSIGISYSMPEVPIRVKQKL 119
            MEKKWACQSMCTWAIK+ CD+IGI+Y +PEVP+ +K K+
Sbjct: 1127 MEKKWACQSMCTWAIKNACDTIGITYYLPEVPVVMKNKM 1165
[Close]
BLAST of mRNA_F-serratus_M_contig62.17021.1 vs. uniprot
Match: D7FX36_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX36_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 7.300e-11
Identity = 28/39 (71.79%), Postives = 35/39 (89.74%), Query Frame = 3 
Query:    3 MEKKWACQSMCTWAIKDGCDSIGISYSMPEVPIRVKQKL 119
            M+KKWACQSMCTWAIK+ CD+IGI+Y +PEVPI +K K+
Sbjct:  986 MDKKWACQSMCTWAIKNACDTIGITYYLPEVPIVMKNKI 1024
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig62.17021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FX37_ECTSI3.960e-1173.68Small Conductance Mechanosensitive Ion channel n=1... [more]
A0A6H5JDS1_9PHAE3.970e-1171.05EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JBC1_9PHAE3.970e-1171.79EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7FX36_ECTSI7.300e-1171.79Small Conductance Mechanosensitive Ion channel n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig62contigF-serratus_M_contig62:667312..668321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size427
Cds size273
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig62.17021.1prot_F-serratus_M_contig62.17021.1Fucus serratus malepolypeptideF-serratus_M_contig62 667312..668168 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931919.4450173-CDS-F-serratus_M_contig62:667311..6674421622931919.4450173-CDS-F-serratus_M_contig62:667311..667442Fucus serratus maleCDSF-serratus_M_contig62 667312..667442 +
1690964057.7992795-CDS-F-serratus_M_contig62:667311..6674421690964057.7992795-CDS-F-serratus_M_contig62:667311..667442Fucus serratus maleCDSF-serratus_M_contig62 667312..667442 +
1622931919.46663-CDS-F-serratus_M_contig62:668026..6681681622931919.46663-CDS-F-serratus_M_contig62:668026..668168Fucus serratus maleCDSF-serratus_M_contig62 668027..668168 +
1690964057.8126352-CDS-F-serratus_M_contig62:668026..6681681690964057.8126352-CDS-F-serratus_M_contig62:668026..668168Fucus serratus maleCDSF-serratus_M_contig62 668027..668168 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931919.4831176-UTR-F-serratus_M_contig62:668168..6683211622931919.4831176-UTR-F-serratus_M_contig62:668168..668321Fucus serratus maleUTRF-serratus_M_contig62 668169..668321 +
1690964057.8214192-UTR-F-serratus_M_contig62:668168..6683211690964057.8214192-UTR-F-serratus_M_contig62:668168..668321Fucus serratus maleUTRF-serratus_M_contig62 668169..668321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig62.17021.1

>prot_F-serratus_M_contig62.17021.1 ID=prot_F-serratus_M_contig62.17021.1|Name=mRNA_F-serratus_M_contig62.17021.1|organism=Fucus serratus male|type=polypeptide|length=91bp
AWRRNGHARACVPGRSRTVATVSGSRTLCPRSPSASSRSCPEILLTRVKV
WFQTLGKCKRCLFVINYALVHPYLLFAFCILIGTTVTKSK*
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mRNA from alignment at F-serratus_M_contig62:667312..668321+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig62.17021.1 ID=mRNA_F-serratus_M_contig62.17021.1|Name=mRNA_F-serratus_M_contig62.17021.1|organism=Fucus serratus male|type=mRNA|length=1010bp|location=Sequence derived from alignment at F-serratus_M_contig62:667312..668321+ (Fucus serratus male)
GCATGGAGAAGAAATGGGCATGCCAGAGCATGTGTACCTGGGCGATCAAG
GACGGTTGCGACAGTATCGGGATCTCGTACTCTATGCCCGAGGTCCCCAT
CCGCGTCAAGCAGAAGCTGCCCTGAGATCTTGTGAGCAGATCGACGGCTC
CGCCTCAGTCGTTGCTACATACTATCGCCGATTTTTTCAACATGCTCAGT
TCATACCAATAGTGGGTGTGAGAAAGAGAGGCATACTAGTGCCAAGGCAG
CACTCATCGTTCGGAACTACCTTGAGGTTTAGTGGTCCTGTGCGGGCGGA
TTCTCGGCAGCGAATGCCATCGGTACGTAATTGCATGACCCGATCAACTC
GGGACTGACCCCATGGCGTATGGCGGTTTTAAATCAATAAATGGACGCCG
CCGCGAATCTCGGGAGGAGTGCCATAAGTAAGCGCCATATTCAGCCTGAG
TATGGAGATGAGCAGGCTGACGCGGGACGGGACTGCGAAACCCGTCTCGC
GAGACCAAATTCTCGTGGGCGAACCCGAACAGGAAAATACTTATTTTCCC
TGTTCAGCTGACTATTAGCAGGATTGGCAACCTTGCCCGGTTGATCCATA
CCCTTGCTGTATGTGTGACCATACATACACACATACATACATACATACCT
GGTATTCTTTTTCCGTCGCTTTTGCTCTGTTTCCCTCCTCACTTTTCCGC
CATGTGATTTGTCAGGTTGACCCGCGTGAAGGTGTGGTTCCAGACTTTGG
GCAAATGCAAACGGTGTCTATTTGTAATCAACTATGCGTTAGTACACCCC
TATCTCCTTTTTGCGTTCTGCATTTTGATAGGGACGACTGTTACCAAAAG
CAAATGACAGTTCATTTAGTACTTTTTTTATTTTGGCTTGGAATAAGACG
TTCAAGCCGTGAACATGTTCGATGCTAATGGCCACGAAATCTACGTGTGC
TGGGCGCCCGAAGTACGCACGACTGGCGGATGACATTCGACACGCTGTGC
CGACGTGGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig62:667312..668321+

>mRNA_F-serratus_M_contig62.17021.1 ID=mRNA_F-serratus_M_contig62.17021.1|Name=mRNA_F-serratus_M_contig62.17021.1|organism=Fucus serratus male|type=CDS|length=546bp|location=Sequence derived from alignment at F-serratus_M_contig62:667312..668321+ (Fucus serratus male)
GCATGGAGAAGAAATGGGCATGCCAGAGCATGTGTACCTGGGCGATCAAG
GACGGTTGCGACAGTATCGGGATCTCGTACTCTATGCCCGAGGTCCCCAT
CCGCGTCAAGCAGAAGCTGCCCTGAGATCTTGCATGGAGAAGAAATGGGC
ATGCCAGAGCATGTGTACCTGGGCGATCAAGGACGGTTGCGACAGTATCG
GGATCTCGTACTCTATGCCCGAGGTCCCCATCCGCGTCAAGCAGAAGCTG
CCCTGAGATCTTGTTGACCCGCGTGAAGGTGTGGTTCCAGACTTTGGGCA
AATGCAAACGGTGTCTATTTGTAATCAACTATGCGTTAGTACACCCCTAT
CTCCTTTTTGCGTTCTGCATTTTGATAGGGACGACTGTTACCAAAAGCAA
ATGAGTTGACCCGCGTGAAGGTGTGGTTCCAGACTTTGGGCAAATGCAAA
CGGTGTCTATTTGTAATCAACTATGCGTTAGTACACCCCTATCTCCTTTT
TGCGTTCTGCATTTTGATAGGGACGACTGTTACCAAAAGCAAATGA
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