mRNA_F-serratus_M_contig1213.1682.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1213.1682.1
Unique NamemRNA_F-serratus_M_contig1213.1682.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1213.1682.1 vs. uniprot
Match: A0A6H5KRD8_9PHAE (BZIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD8_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 6.220e-13
Identity = 54/93 (58.06%), Postives = 59/93 (63.44%), Query Frame = 2 
Query:  182 MNGGSTEVVSDFANGVEDVFLAGFDAWGELG--QMQGSFMAGATQAVGGGVGGVSAGVNPVTGTVG--RAPPGIGSLTTLGGSLQSFLGEAGM 448
            MNGG     S    GVEDVFLAGF+AWGELG  QMQGS                SAG +P +G  G  RAPPGIGS+T LGGS+QSFLGEAGM
Sbjct:    1 MNGGGDGEFS--GGGVEDVFLAGFEAWGELGGGQMQGS---------------QSAGYSPGSGAAGGARAPPGIGSMTGLGGSMQSFLGEAGM 76
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1213.1682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRD8_9PHAE6.220e-1358.06BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1213contigF-serratus_M_contig1213:85872..88611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size918
Cds size735
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1213.1682.1prot_F-serratus_M_contig1213.1682.1Fucus serratus malepolypeptideF-serratus_M_contig1213 86053..88611 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929135.1562395-UTR-F-serratus_M_contig1213:85871..860521622929135.1562395-UTR-F-serratus_M_contig1213:85871..86052Fucus serratus maleUTRF-serratus_M_contig1213 85872..86052 +
1690962718.8742921-UTR-F-serratus_M_contig1213:85871..860521690962718.8742921-UTR-F-serratus_M_contig1213:85871..86052Fucus serratus maleUTRF-serratus_M_contig1213 85872..86052 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929135.169878-CDS-F-serratus_M_contig1213:86052..861481622929135.169878-CDS-F-serratus_M_contig1213:86052..86148Fucus serratus maleCDSF-serratus_M_contig1213 86053..86148 +
1690962718.8869615-CDS-F-serratus_M_contig1213:86052..861481690962718.8869615-CDS-F-serratus_M_contig1213:86052..86148Fucus serratus maleCDSF-serratus_M_contig1213 86053..86148 +
1622929135.1838052-CDS-F-serratus_M_contig1213:87972..886111622929135.1838052-CDS-F-serratus_M_contig1213:87972..88611Fucus serratus maleCDSF-serratus_M_contig1213 87973..88611 +
1690962718.896452-CDS-F-serratus_M_contig1213:87972..886111690962718.896452-CDS-F-serratus_M_contig1213:87972..88611Fucus serratus maleCDSF-serratus_M_contig1213 87973..88611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1213.1682.1

>prot_F-serratus_M_contig1213.1682.1 ID=prot_F-serratus_M_contig1213.1682.1|Name=mRNA_F-serratus_M_contig1213.1682.1|organism=Fucus serratus male|type=polypeptide|length=245bp
MNGGSTEVVSDFANGVEDVFLAGFDAWGELGQMQGSFMAGATQAVGGGVG
GVSAGVNPVTGTVGRAPPGIGSLTTLGGSLQSFLGEAGMGYAESTGSGGG
DSFKDGFTGEGGGGNGGGSSTSINGGHNAAGRQFGGEDDGGTGLRDSPCK
MEVMDEDEDGCGDSDLDEEHDYDHEGPPDPQDPQELELQGGEEEGNEDDL
AAFGADGHGQSSEQGVRGLGRVFGIHGTHPMIADAQARAEATVHG
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mRNA from alignment at F-serratus_M_contig1213:85872..88611+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1213.1682.1 ID=mRNA_F-serratus_M_contig1213.1682.1|Name=mRNA_F-serratus_M_contig1213.1682.1|organism=Fucus serratus male|type=mRNA|length=2740bp|location=Sequence derived from alignment at F-serratus_M_contig1213:85872..88611+ (Fucus serratus male)
CTGAGCTGGCGGCGAAGCTTTAAAGATCACGTCGACGCAAGCAACGAACC
ACCGTGCATTCCACCAGAGGATCATTCCGCTAGCATCTACGTGGAAGACA
TTGTGCCCGACGTGCGGGAAGCCTGGAATCCTTGCAAAGGCAGTTTGTGT
AGGGGCCAAGAGCTGGAATCAGGCAAGCGTCATGAACGGGGGGAGCACCG
AGGTCGTGAGCGATTTTGCTAACGGGGTTGAGGATGTATTTCTCGCGGGG
TTCGACGCTTGGGGAGAGCTGGGACAGGTAAGAGGGTCGCCGACTTCGAC
TTTGATAAAACCACACCACCGTCTGTCCTTAATCATAAGTGAATTTAGAA
GACACTGGGCCAACAGAGTTGCAGGAGTGTGTGAGTTCAAAGTGGGAAAC
CGGTCCAACCGGATAAGGCAGTCTATATATTAGAGTTTAAAAGGGACCCG
GCTCAGCTCAGCCCAGGAGCTCCAGTTGAAGGAGTTTTGACCATGCGGTA
GTTCGTTCAGTTCTCTCCTGTAAATACAGAAAGCATTGATACCATCGAAG
ATATCTGTTATCCGTGCCGGGTGTGCATCTGCGAGTTTGATGTTCCGCCC
AGACGGGCCTCCTCTGTTGTCAGCGTGGTGCATCCCTTACCCCTTGCTGT
TCAATTTTAGTTACAGTGGTGCTCACGGAGATGGAAAGAAACTTTAGCCC
GAAGGGAACCAATTTACCACCAAAGTCCCATAAATGGCAGATTTTTAACC
CCGCCTCGCCTTTGTCCCGTTCCCCCCCCTAACATATTTCGCCCTCGAAT
AATGAGTGGGCAGTAGATTTGGCCCGCCAGCCAGCCCTCGTTGATATTTT
GTCAGCAGGTCTGTATGTTGGTAGCTGGATGGGTAACTTCTCTCAAGTAG
TAAAATGATACTCGACTGCAGAAGTTCTCTAGGCTTGAACACCCTCCTGA
AGTTTCCACGCAGTTCATTTTGCTTACTTTTTTTCTACAAACAGTATTGT
TCGCACTACTGTCTGTACTGCTGTACTGTATTGTAGTACAGACAAATCCT
GTATTTTCTAAGCTTGCACTTGTTTCCCAGTACAATTAGGTAGGCCAGCA
CTGCTGTACTCAGACAGTACGTTACAGCATTCGTAAATTTGTTTTTCACG
TACACAGACAGTAGTACGACTACTCAACAGCTGTTCCACTTGAGTAGCCA
ACTGCTGCAGCTGGGCCTTTTAATACCAGCATATATCGTTGCACTCAAAA
CTCAGTACTAAAATAGAGAACGGTACTGTACGGCAACGTTACCTCAGTGC
AACAAGAAGCGAAGACGTTTCATTCATGTTTACCGGAATCCCATCGTGTA
AAGTAGCAGACCACGACCGGGATTGGCCACCGTGTAAAGTGATTTTTTTC
GGGTTGGCAACAAATGCGCTGAATTTGAGAAAACAACATTCATTTTTAAC
GGAAACCCATCCCAAAGGGTATTTTCTGTGGGCACCGACCGCCTTCTATT
TTAGGTTGGCTCTAGCTCTAGGCTCTAGCTAAATAGCTACAACGGGAGCA
AAGAGTTTAAATTAATTTTAACAGAATTCCATCGTGGAGAGCATATATCT
GTGAAACCACTGCTTTCTCCGTATTCTCAAATCGTTTCTGCTGGCGATGT
ATATTTTTAACGGAAACCCATCGCGGAGGGTATAGTTTCTGCTGGCGATG
TTTATTTTTAACGGAAACCCATCGCGGAGGGTATATTCTGTGGGCACCGC
ATTCTATTTTAGGTTGGCTCTAGCTCTAGACTATACAGCTAAATAGCTCC
AAGGAGGGCACAGCCAGTGGTTAAATTAATTTTAGTAGGGAACGCATATA
TTTGTGAAACCACTGCTCTCTCCGCAGCATGCTCGAATCGTTTCTGGTGA
CGATATCTGTTGACTATATAATTCGACGCCTTCGTAGAGCCAATAATCCT
ATAATCCGCATGTTGCAGAGTTGTGTCTTACGGTGTGGTGTCTATAGAAG
CGCATACGTGTACTCTACCCCACCTCACCACGTCGAACTCGCCAGCATCC
ACACCCTTGTAACTCGTCTTTCGTCCCGCTTTTTTTTTTTTGTGGTCACA
GATGCAAGGTTCCTTCATGGCAGGGGCCACTCAAGCCGTTGGGGGGGGCG
TCGGGGGCGTGAGCGCTGGAGTGAATCCAGTGACTGGCACAGTGGGGCGC
GCCCCCCCTGGTATCGGATCTTTGACTACCCTTGGTGGAAGTTTACAATC
GTTTTTGGGAGAAGCTGGAATGGGATATGCGGAAAGCACTGGCAGCGGAG
GCGGGGACAGTTTCAAGGATGGATTCACGGGGGAGGGCGGGGGCGGCAAC
GGCGGCGGTAGTAGTACTAGTATCAATGGCGGTCACAATGCTGCTGGTCG
GCAGTTCGGCGGAGAGGATGACGGGGGCACGGGGCTAAGAGATTCGCCTT
GCAAGATGGAGGTTATGGACGAGGACGAAGATGGGTGCGGCGATTCGGAT
CTCGACGAGGAACACGACTACGACCATGAAGGCCCACCCGATCCCCAAGA
CCCTCAAGAGCTAGAGCTCCAGGGGGGAGAGGAGGAGGGGAATGAGGATG
ACCTTGCCGCCTTCGGAGCGGACGGCCACGGTCAATCTTCGGAGCAGGGC
GTGAGGGGGCTGGGCAGGGTATTTGGCATCCACGGAACTCATCCAATGAT
CGCGGATGCTCAAGCTAGGGCGGAGGCTACCGTTCACGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1213:85872..88611+

>mRNA_F-serratus_M_contig1213.1682.1 ID=mRNA_F-serratus_M_contig1213.1682.1|Name=mRNA_F-serratus_M_contig1213.1682.1|organism=Fucus serratus male|type=CDS|length=1470bp|location=Sequence derived from alignment at F-serratus_M_contig1213:85872..88611+ (Fucus serratus male)
ATGAACGGGGGGAGCACCGAGGTCGTGAGCGATTTTGCTAACGGGGTTGA
GGATGTATTTCTCGCGGGGTTCGACGCTTGGGGAGAGCTGGGACAGATGA
ACGGGGGGAGCACCGAGGTCGTGAGCGATTTTGCTAACGGGGTTGAGGAT
GTATTTCTCGCGGGGTTCGACGCTTGGGGAGAGCTGGGACAGATGCAAGG
TTCCTTCATGGCAGGGGCCACTCAAGCCGTTGGGGGGGGCGTCGGGGGCG
TGAGCGCTGGAGTGAATCCAGTGACTGGCACAGTGGGGCGCGCCCCCCCT
GGTATCGGATCTTTGACTACCCTTGGTGGAAGTTTACAATCGTTTTTGGG
AGAAGCTGGAATGGGATATGCGGAAAGCACTGGCAGCGGAGGCGGGGACA
GTTTCAAGGATGGATTCACGGGGGAGGGCGGGGGCGGCAACGGCGGCGGT
AGTAGTACTAGTATCAATGGCGGTCACAATGCTGCTGGTCGGCAGTTCGG
CGGAGAGGATGACGGGGGCACGGGGCTAAGAGATTCGCCTTGCAAGATGG
AGGTTATGGACGAGGACGAAGATGGGTGCGGCGATTCGGATCTCGACGAG
GAACACGACTACGACCATGAAGGCCCACCCGATCCCCAAGACCCTCAAGA
GCTAGAGCTCCAGGGGGGAGAGGAGGAGGGGAATGAGGATGACCTTGCCG
CCTTCGGAGCGGACGGCCACGGTCAATCTTCGGAGCAGGGCGTGAGGGGG
CTGGGCAGGGTATTTGGCATCCACGGAACTCATCCAATGATCGCGGATGC
TCAAGCTAGGGCGGAGGCTACCGTTCACGGGATGCAAGGTTCCTTCATGG
CAGGGGCCACTCAAGCCGTTGGGGGGGGCGTCGGGGGCGTGAGCGCTGGA
GTGAATCCAGTGACTGGCACAGTGGGGCGCGCCCCCCCTGGTATCGGATC
TTTGACTACCCTTGGTGGAAGTTTACAATCGTTTTTGGGAGAAGCTGGAA
TGGGATATGCGGAAAGCACTGGCAGCGGAGGCGGGGACAGTTTCAAGGAT
GGATTCACGGGGGAGGGCGGGGGCGGCAACGGCGGCGGTAGTAGTACTAG
TATCAATGGCGGTCACAATGCTGCTGGTCGGCAGTTCGGCGGAGAGGATG
ACGGGGGCACGGGGCTAAGAGATTCGCCTTGCAAGATGGAGGTTATGGAC
GAGGACGAAGATGGGTGCGGCGATTCGGATCTCGACGAGGAACACGACTA
CGACCATGAAGGCCCACCCGATCCCCAAGACCCTCAAGAGCTAGAGCTCC
AGGGGGGAGAGGAGGAGGGGAATGAGGATGACCTTGCCGCCTTCGGAGCG
GACGGCCACGGTCAATCTTCGGAGCAGGGCGTGAGGGGGCTGGGCAGGGT
ATTTGGCATCCACGGAACTCATCCAATGATCGCGGATGCTCAAGCTAGGG
CGGAGGCTACCGTTCACGGG
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