mRNA_F-serratus_M_contig1212.1680.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1212.1680.1
Unique NamemRNA_F-serratus_M_contig1212.1680.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1212.1680.1 vs. uniprot
Match: D8LN63_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN63_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 6.300e-55
Identity = 124/215 (57.67%), Postives = 161/215 (74.88%), Query Frame = 2 
Query:  332 DHLEEVPEEMSNKVLELECPDTGEVLECYAERFAMVQGQRYLAAYPKDPAVAVAFDVDGEVAPVPIDDPLMDEVFPLAQACLNDLGPVITLLRTPASLTARGLDDVVGSIEDEDDEEDFGGPLEGDDSVEDGAGEGXXXXXXXXXXXXXXXXXEFYDDADEVELLGEFVAEGEEFLLVRFLEPLLLLAKEKEPGRFVLLNDEEDEAASPAVEALL 976
            D LEEV +E+++K + L CP TG+ L CYAER A+V G+RYL A+PKDPAVA+AFD +GEV+PVP DDP+MDE+FPLA+AC+ DLGP +TLLRTP +LT +GL+++V   +D + E   GG  E            XXXXXXXXXXXXXXXXX       EVELLGEF+ EGEEFL+VRFLEP+L+LAKE  PG ++L+++EE++ A P V+ +L
Sbjct:    9 DSLEEVSDELASKPVALGCPKTGKELVCYAERIAVVGGERYLVAFPKDPAVAIAFDENGEVSPVPNDDPIMDELFPLAEACVADLGPGVTLLRTPTTLTVQGLNELVDEAKDREAE---GGDPEX----------XXXXXXXXXXXXXXXXXXXXXXXXXEVELLGEFLLEGEEFLIVRFLEPILILAKEHTPGNYLLIDEEEEQDAIPLVDEML 210
[Close]
BLAST of mRNA_F-serratus_M_contig1212.1680.1 vs. uniprot
Match: A0A836CAA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAA3_9STRA)

HSP 1 Score: 139 bits (351), Expect = 4.790e-35
Identity = 103/289 (35.64%), Postives = 150/289 (51.90%), Query Frame = 2 
Query:  134 QVVAVCLLSFLFTSQAFFVTPA--AARTGLTASGQGKAASPSRCNRHGIWFDGSERSSRRRTGSALQMDHLEEVPEEMSNKVLELECPDTGEVLECYAERFAMVQGQRYLAAYPKDPAVAVAFDVDGEVAPVPIDDPLMDEVFPLAQACLNDLGPVITLLRTPASLTARGLDDVVGSIEDEDDEEDFGGPLEGDDSVEDGAGEGXXXXXXXXXXXXXXXXXEFYDDADEVELLGEFVAEGEEFLLVRFLEPLLLLAKE---KEPGRFVLLNDEEDEAASPAVEALLSEE 985
            ++ A  ++     + AFF+ PA  AAR+   AS  G  A P+ C               RR  +AL    L E+PEE  ++V     P+T  V++CYAE FA + G RY+  +P D AVA+A + DG++ PVP+DD LMD +FP+ Q  L + G  + L RTP +LT  GL+       D++D ED  G  EG D+                             D ++VEL+ E    GE+FLLV+FL+P+L++AKE   K    + LL+ +EDE  +  VE +L+EE
Sbjct:    4 RIAAQAIVLLPLAANAFFLAPAPTAARSSQHASIAG--ARPALC---------------RRQSTALLDSKLIEIPEERLSEVFRFFDPETSTVIDCYAENFAEIDGARYVVGFPVDDAVAIAMEQDGDIMPVPVDDELMDTLFPVLQKDLEEAGAELVLKRTPVTLTLSGLE-----AYDDEDREDLTGDDEGGDA-----------------------------DNEDVELISELDINGEKFLLVKFLDPVLMVAKEVKGKGEVTYELLDADEDERVTALVEEMLTEE 241
[Close]
BLAST of mRNA_F-serratus_M_contig1212.1680.1 vs. uniprot
Match: A0A835YQ15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ15_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.890e-19
Identity = 73/210 (34.76%), Postives = 109/210 (51.90%), Query Frame = 2 
Query:  392 DTGEVLECYAERFAMVQGQRYLAAYPKDPAVAVAF-DVDGEVAPVPIDDPLMDEVFPLAQACLNDLGPVITLLRTPASLTARGL---DDVVGSIEDEDDEEDFGGPLEGD------DSVEDGAGEGXXXXXXXXXXXXXXXXXEFYDDADEVELLGEFVAEGEEFLLVRFLEPLLLLAKEKEPG--RFVLLNDEEDEAASPAVEALLSEE 985
            +TG V+ECY + FA+V GQ+YL  +P D  V++   D +G + P+P++  LMDEVF   Q  L +    + L RTP +LT +G    D   G  ED+  E+D+             D +E+G G+                      DAD VEL+  F  EG E+ LVR L+P+LL+AK  + G  R+ L+++ E    +P +E LL +E
Sbjct:    4 ETGRVVECYPDVFAVVNGQKYLVGHPCDWCVSIGKPDAEGNLEPIPLEGELMDEVFSTLQTMLEE--DDVHLFRTPVTLTLQGEFLEDGYEGDEEDDLGEDDYXXXXXXXNDGLQFDIIEEGDGQDPGDFEEEELEPTDI-------DADNVELIASFWHEGAEYSLVRHLDPILLVAKPSQEGDGRYALVSEAEAADVNPVLERLLEKE 204
[Close]
BLAST of mRNA_F-serratus_M_contig1212.1680.1 vs. uniprot
Match: B8C1Z8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1Z8_THAPS)

HSP 1 Score: 74.7 bits (182), Expect = 1.910e-11
Identity = 67/191 (35.08%), Postives = 98/191 (51.31%), Query Frame = 2 
Query:  407 LECYAERFAMVQGQRYLAAYPKDPAVAVA-FDVDGEVAPVPIDDPLMDEVFPLAQACLND-LGPVITLLRTPASLTARGLDDVVGSIEDEDDEEDFGGPLEGDDSVEDGAGEGXXXXXXXXXXXXXXXXXEFYDDADEVELLGEFVAEGEEFLLVRFLEPLLLLAKEKEPGRFVLLNDEEDEAASPAVEAL 973
            ++CY + +A V    Y    P D AVA+  F+ D ++ P+ +DDPLMD++FP+A+  + D  G  + LLRTP +LT      +VG +E+ DD                           XXXXXXXXXXX        VE+L  F  +G E+ LVR L+P+LL+ K       +LL+ EE +   P +E +
Sbjct:   98 IDCYVDSYATVDQVEYTIGSPCDYAVALCYFENDEQLVPIELDDPLMDDIFPVAEGIIEDEFGEELVLLRTPQTLT------LVGELEENDD---------------------------XXXXXXXXXXXXXXXXXXXVEILVSFEEDGREYHLVRLLDPVLLVGKGGNENTRILLSPEESDIVMPKLEQM 255
[Close]
BLAST of mRNA_F-serratus_M_contig1212.1680.1 vs. uniprot
Match: D8LHY2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHY2_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.650e-10
Identity = 80/235 (34.04%), Postives = 117/235 (49.79%), Query Frame = 2 
Query:  338 LEEVPEEMSNK--VLELECP-DTGEVLECYAERFAMVQGQRYLAAYPKDPAVAVAFDVD-GEVAPVPIDDPLMDEVFPLAQACLNDLGPVITLLRTPASLTARG--LDD------------VVGSIEDEDDEEDFGGPLEGDDSVE-DGAGEGXXXXXXXXXXXXXXXXXEFYDDADEVELLGEFVAEGEEFLLVRFLEPLLLLAKEKEPGRFVLLNDEEDEAASPAVEALLSEE 985
            LE VPE+  ++  V   E P  T  V+ECYA+RFA+V G+RY+  +P D AV+V    D G V  VP+D  LM+E+ P  Q  L      + L  TP +LT +G  LDD                    +   + G    GD+ +E +   EG         XXX          A+ VEL+  +  E +E+ LV+ L+P+ ++A++ + G + LL +EE  A  P VEA+L EE
Sbjct:  124 LETVPEDKLDQAYVFRQERPGQTPRVIECYADRFAVVGGRRYMIGHPCDWAVSVCTPKDEGNVEAVPLDSELMEELLPGLQRELE--AEDVHLFVTPITLTLQGDFLDDDXXXXXXXXXXXXXXXXXXMEYSSNKGTAFIGDEEIEYEVLEEGDGSYPTEEEXXXEDVRVPTDITAEGVELIASYWYEDKEYALVKHLDPVFVIARQTKNG-YYLLGEEEAAAVKPKVEAMLLEE 355
[Close]
BLAST of mRNA_F-serratus_M_contig1212.1680.1 vs. uniprot
Match: A0A6U0L8R0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0L8R0_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.160e-6
Identity = 78/216 (36.11%), Postives = 119/216 (55.09%), Query Frame = 2 
Query:  347 VPEEMSNKVLELECPDTGEVLECYAERFAMVQ-GQRYLAAYPKDPAVAVAF--DVDGEVAPVPIDDPLMDEVFPLAQACLND-LGPVITLLRTPASLTARGLDDVVGSIEDEDDEEDFGGPLEGDDSVEDGAGEGXXXXXXXXXXXXXXXXXEFYDDADEVELLGEFVAEGEEFLLVRFLEPLLLLAK---EKEPGRFVLLNDEEDEAASPAVEAL 973
            VP+E  + V+    P+T   ++CYA+    +  G  Y    P D AVA+ +  + +G + P+ +DDP+MD+VFP+A+  + +  G  ++L RTP +LT      +VG +E            EG++         XXXXXXXXXXXXXXXXX       EVE+L  F    +EF +VR L+P+LL+     E E  R +LL+ ++ +A  PA+E +
Sbjct:   60 VPDE-DDAVIPFVDPETNTFVDCYADSIVTLSNGITYTVGEPCDYAVALGYVDEREGGLVPLELDDPMMDDVFPVAELIIEEEFGEELSLQRTPQTLT------LVGELE------------EGEEXXX------XXXXXXXXXXXXXXXXXXXXXXXXEVEILLSFEHRDKEFHIVRLLDPVLLVGTTDTENEERR-ILLSPKQADAVMPALEEI 249
[Close]
BLAST of mRNA_F-serratus_M_contig1212.1680.1 vs. uniprot
Match: A0A7S0B097_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B097_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 7.940e-6
Identity = 35/101 (34.65%), Postives = 59/101 (58.42%), Query Frame = 2 
Query:  347 VPEEMSNKVLELECPDTGEVLECYAERFAMVQ-GQRYLAAYPKDPAVAVAF--DVDGEVAPVPIDDPLMDEVFPLAQACLND-LGPVITLLRTPASLTARG 637
            VP+E  + V+    P+T   ++CYA+    +  G  Y    P D AVA+ +  + +G + P+ +DDP+MD+VFP+A+  + +  G  ++L RTP +LT  G
Sbjct:   60 VPDE-DDAVIPFVDPETNTFVDCYADSIVTLSNGITYTVGEPCDYAVALGYVDEREGGLVPLELDDPMMDDVFPVAELIIEEEFGEELSLQRTPQTLTLVG 159
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1212.1680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LN63_ECTSI6.300e-5557.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAA3_9STRA4.790e-3535.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQ15_9STRA1.890e-1934.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B8C1Z8_THAPS1.910e-1135.08Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
D8LHY2_ECTSI1.650e-1034.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6U0L8R0_9STRA1.160e-636.11Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S0B097_9STRA7.940e-634.65Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1212contigF-serratus_M_contig1212:145998..151130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.4
Seed ortholog evalue1.8e-47
Seed eggNOG ortholog2880.D8LN63
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Protein of unknown function (DUF3727)
EggNOG OGs2B3Q5@1,2SC6V@2759
Ec32 ortholog descriptionProtein of unknown function DUF3727
Ec32 orthologEc-05_003660.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1310
Cds size885
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929134.8424542-UTR-F-serratus_M_contig1212:145997..1463131622929134.8424542-UTR-F-serratus_M_contig1212:145997..146313Fucus serratus maleUTRF-serratus_M_contig1212 145998..146313 -
1690962718.6835306-UTR-F-serratus_M_contig1212:145997..1463131690962718.6835306-UTR-F-serratus_M_contig1212:145997..146313Fucus serratus maleUTRF-serratus_M_contig1212 145998..146313 -
1622929134.9518464-UTR-F-serratus_M_contig1212:151021..1511301622929134.9518464-UTR-F-serratus_M_contig1212:151021..151130Fucus serratus maleUTRF-serratus_M_contig1212 151022..151130 -
1690962718.7689846-UTR-F-serratus_M_contig1212:151021..1511301690962718.7689846-UTR-F-serratus_M_contig1212:151021..151130Fucus serratus maleUTRF-serratus_M_contig1212 151022..151130 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929134.8584561-CDS-F-serratus_M_contig1212:146313..1463611622929134.8584561-CDS-F-serratus_M_contig1212:146313..146361Fucus serratus maleCDSF-serratus_M_contig1212 146314..146361 -
1690962718.6967819-CDS-F-serratus_M_contig1212:146313..1463611690962718.6967819-CDS-F-serratus_M_contig1212:146313..146361Fucus serratus maleCDSF-serratus_M_contig1212 146314..146361 -
1622929134.8717575-CDS-F-serratus_M_contig1212:146651..1467471622929134.8717575-CDS-F-serratus_M_contig1212:146651..146747Fucus serratus maleCDSF-serratus_M_contig1212 146652..146747 -
1690962718.7082765-CDS-F-serratus_M_contig1212:146651..1467471690962718.7082765-CDS-F-serratus_M_contig1212:146651..146747Fucus serratus maleCDSF-serratus_M_contig1212 146652..146747 -
1622929134.8858438-CDS-F-serratus_M_contig1212:147816..1480571622929134.8858438-CDS-F-serratus_M_contig1212:147816..148057Fucus serratus maleCDSF-serratus_M_contig1212 147817..148057 -
1690962718.7205691-CDS-F-serratus_M_contig1212:147816..1480571690962718.7205691-CDS-F-serratus_M_contig1212:147816..148057Fucus serratus maleCDSF-serratus_M_contig1212 147817..148057 -
1622929134.8990886-CDS-F-serratus_M_contig1212:148310..1484471622929134.8990886-CDS-F-serratus_M_contig1212:148310..148447Fucus serratus maleCDSF-serratus_M_contig1212 148311..148447 -
1690962718.7290118-CDS-F-serratus_M_contig1212:148310..1484471690962718.7290118-CDS-F-serratus_M_contig1212:148310..148447Fucus serratus maleCDSF-serratus_M_contig1212 148311..148447 -
1622929134.9111693-CDS-F-serratus_M_contig1212:148767..1488931622929134.9111693-CDS-F-serratus_M_contig1212:148767..148893Fucus serratus maleCDSF-serratus_M_contig1212 148768..148893 -
1690962718.739203-CDS-F-serratus_M_contig1212:148767..1488931690962718.739203-CDS-F-serratus_M_contig1212:148767..148893Fucus serratus maleCDSF-serratus_M_contig1212 148768..148893 -
1622929134.9228692-CDS-F-serratus_M_contig1212:149723..1498911622929134.9228692-CDS-F-serratus_M_contig1212:149723..149891Fucus serratus maleCDSF-serratus_M_contig1212 149724..149891 -
1690962718.7528245-CDS-F-serratus_M_contig1212:149723..1498911690962718.7528245-CDS-F-serratus_M_contig1212:149723..149891Fucus serratus maleCDSF-serratus_M_contig1212 149724..149891 -
1622929134.9352791-CDS-F-serratus_M_contig1212:150952..1510211622929134.9352791-CDS-F-serratus_M_contig1212:150952..151021Fucus serratus maleCDSF-serratus_M_contig1212 150953..151021 -
1690962718.7609828-CDS-F-serratus_M_contig1212:150952..1510211690962718.7609828-CDS-F-serratus_M_contig1212:150952..151021Fucus serratus maleCDSF-serratus_M_contig1212 150953..151021 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1212.1680.1prot_F-serratus_M_contig1212.1680.1Fucus serratus malepolypeptideF-serratus_M_contig1212 146314..151021 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1212.1680.1

>prot_F-serratus_M_contig1212.1680.1 ID=prot_F-serratus_M_contig1212.1680.1|Name=mRNA_F-serratus_M_contig1212.1680.1|organism=Fucus serratus male|type=polypeptide|length=295bp
MSIKILRGQVVAVCLLSFLFTSQAFFVTPAAARTGLTASGQGKAASPSRC
NRHGIWFDGSERSSRRRTGSALQMDHLEEVPEEMSNKVLELECPDTGEVL
ECYAERFAMVQGQRYLAAYPKDPAVAVAFDVDGEVAPVPIDDPLMDEVFP
LAQACLNDLGPVITLLRTPASLTARGLDDVVGSIEDEDDEEDFGGPLEGD
DSVEDGAGEGGQEGLSEGDDNDEDEDDEFYDDADEVELLGEFVAEGEEFL
LVRFLEPLLLLAKEKEPGRFVLLNDEEDEAASPAVEALLSEEGL*
back to top

mRNA from alignment at F-serratus_M_contig1212:145998..151130-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1212.1680.1 ID=mRNA_F-serratus_M_contig1212.1680.1|Name=mRNA_F-serratus_M_contig1212.1680.1|organism=Fucus serratus male|type=mRNA|length=5133bp|location=Sequence derived from alignment at F-serratus_M_contig1212:145998..151130- (Fucus serratus male)
AGCATACCTGTAGTTGCAAATTGCTCTCCTCGGAATACGTTATTGCATCT
CCGCCAGAGCTAGGGAGGGACCGTATTTACTGTACCCATCATTGAGGCCA
CAATCAGCGATGAGCATCAAGATATTGCGTGGCCAAGTTGTGGCAGTCTG
TCTACTCTCGTTCTTGTTCACCTCTCAGGTCTGGAACGTGTGGTGCATGT
CTGAGTCGGCTCTCACTTGCGCTGCTGAAACATACAAAGTATTAGTGTTT
TTCGTCTTGTTTTGTCATCTGTACGATAGCTCTATATAAGTACGGTACAT
GTCATACAAAAATCACTAATATTGTACGAGCCGGTCGTGAAATCCACGAA
TCCCTAGGGCACTATTTTTCCTCGGCATGTCTCTCACGAGGTTTGCATCG
ACAACTGTTGGGCATTTTTTCCCACTGGGTGGGTGCTCAAAAGTCAAAAG
GTTTAGATTTTTTGAACATCTGGTGATTTTACGAGCTCTAATTGGATGGG
CAGGATTCCAGAAGCTCTACAAGTTTCAAGTTTCAGTGAAAGATTGGGTA
AAACTGCAGCAGGATGCCGCAAGCCTCATGCTCACAACGACACAACGCAT
TGATCGACGCCGGTCCGAGAGCAGTCAGAATGTCGGCGTTGTTCTCGAAG
AGATCTCGAGGCATGAGCAGCATCGGAATACACATACAGGTCGTTCGCCG
AGTGCTCGGCGGAATCTCCAAGCTATCCGAATTCATCTGTATCTACGAGT
TATCATCTGTTTTGGGGTGTTTATTGGGCAAGTGTACAATCATTACTTTT
AATACAGTACAATATTTAAAATACTTGTTCTCAAGTTCCCAGCACCAACA
GCCGTCCCTTGTTTGTCAGGAGCCAAGAGCCACGATTCAGACTGGCGACG
CAGAGGCTCGCGATGCTGCTTACAAGTTTTTCTAAACAGATCCCCCATAC
AAAAGAACCAATTTCAAACAGTATTGAAAGTCTGTGACTCGCGGATCGCG
AAATCTCACACCTCACGAACGGTGAACAGTACCGCAAAGAGTCGTTTCTC
TCCACGGCATGGCTGATTAATCTCGCCGTTTTTCCAGGTGACCTACTGGC
GGGCTGCCGGCGAACGCGCCGTATGATGAAATTGCTGAGCATCTCAGCCA
ACCCACTCCCGCACGTAATATTCCCTCACTCCTTGATGTTGCCCAACCTT
CCTGGGGTTTCCATTCCACTTGCTACTTTCACACGGAAGGCATTTTTCGT
CACACCCGCAGCCGCAAGGACGGGACTGACCGCCAGCGGTCAGGGCAAAG
CCGCGAGCCCGAGCAGATGTAACAGACATGGCATCTGGTTCGACGGTAGC
GAAAGGTCTTCGCGCAGGAGGACAGGGTCTGCGTTGCAGATGGATCACCT
CGAGGAAGTGGGTAACGCGGTTGTCCTTCTACGATTGTCCTTCCAGCTGC
TGTGACGAAATATCGGCGATGCAGCAGTAACCGTAGGTGCCGGGTGACAT
CTGTACATATCTGTCCATGCTCGAGTTATCTCTAAACATAAATCCACACG
CACTGTCGTACCCGAACTCATGAAACAAAAATCATCCCACATAGGTTTGA
TCTCGCACAAACATATTTAGGGTTGTAGAGCCATGGCCATACACGCTACG
CCTACGTTTTAAAGATGGTTGCGAGCTTCTTTTGGGGCATATATGCGATT
TCTGTATCATCGAGTTTAGGGGCTGGGGGGCTCCATTTGCTAGGTCTGTT
CAGCCGTTACTTGAGTGATAGAGCTACTGTGTAGATCATGTCTCTGACCT
GATCGTTGTGGTGATCGAGCTTTGCTTATGCTTAAATAAAAATGAGAACG
CGCCTAGACCTTCTGTTGAGGTCTTTGAAATCAATCCGTATGTTTACGCA
TGGCGGGGCTAAGATCGAAGCTCTCGCCGGCGAGCAGGCAAACAACACCC
TCGCGTTTCGTGACGAAACGTCGTTTCGGTTGTCCTTTTAAACCAATTTG
ACACGGCGACTAAAACCCTTTAGCGTGGCGGTCGTTCGACGAAGCGGGTA
GAGCCTACTGGTAGGCCCCAACAAGAGCCATCGCGCCTTTTTTTGTTTCG
TACGAGCAGATCAACCCTCCACCGTTAGCCTCGGAAGAAGTCACGGCAGA
AACGAACCACGCATGAGCTACCGTGGGCACAGTATCTATGACCTGCATTC
ACGGTGGGGCCACTGTATGGGTACTATCATCACTTAGGTGCCAGAGGAAA
TGTCCAACAAGGTTCTCGAGCTGGAATGCCCAGATACGGGTGAAGTGCTG
GAGTGCTACGCCGAGCGCTTCGCGATGGTTCAAGGTCAACGTTACCTCGC
CGCTTATCCCAAGGCGAGTCAACGAAAAATCTTCCCTTCATGAATCCATA
TACGGCTGACCATCATCCAATGAGATAAGTCACTGTGACGTGTGATTCTC
TACGCCGAGGGAGGTAAGGTTCACGTTCTCCTCCAGGACGAATGCACTAT
CCGATATACCTACCGCTGCTCCCTCTGAAACACCGCTCCAGATTCACCCT
ATTACTAATCCCGCGCACACACTTTCTCCTTAGAAAAAATAAAAAAAATC
TCAAATTCGAAATTGTCACAGCATTTTCGATAGAGGCGTGCCGCCACCCA
ACCGTGCGCCGCTCTACTTGCTATGCTACTCAGGATCCCGCGGTCGCTGT
CGCCTTCGACGTGGACGGCGAAGTTGCCCCCGTCCCCATTGACGACCCTT
TGATGGACGAGGTGTTCCCGCTCGCCCAGGCGTGCTTGAACGACCTCGGG
CCTGTTATTACCTTACTACGGTACGCATCATGCAGCTGTTAGATTTCGTT
TTTGTGCGGCACGAAACAAGTCCTTAATTTTGGATACGATTGTGGTAGCC
GGAGAAAACACAAACAAGAAACGGTACTGTACACATTATGTTTGATTTAC
TTTTCCGAGTGGTGGACCAACGGAGAAGGTGCTGCTCGTTTTTGCTCATA
GCCTCGGTCACCCGCTCTCTTCTTCACCCACAGCTGTCTAATACCGCGTT
CCCCGTACGTCACGATAATTAAGAACACCTGCGAGCTTAACCGCGAGAGG
TCTGGACGATGTAGTCGGGTCGATAGAAGACGAGGACGACGAGGAAGACT
TTGGCGGTCCTCTTGAGGGTGATGATAGCGTCGAAGATGGGGCAGGTGAA
GGGGGCCAAGAGGGGTTGAGCGAGGGCGACGATAACGACGAGGACGAGGA
CGACGAGTTTTATGATGACGCTGACGAGGTCGAGCTCCTTGGAGAGTTTG
TGGCGGAGGGTGAGGTGAGACTAGGCGGTGCCGAGCTAAGCCAATTTGCA
CTTGTTCCATCGCCCAACATCTGCAAGGAGGCAAGTTTTTCGGACAGACC
CGCGTAACACTTACTGCCCACGTCCAGAGTCGTCCGTTACCAAGGTGTGC
TTTTGTTGCGTAATGAGGTGTTCAAAGAAAAATCTGAATGCACCTAGACC
TTACCTTACCTTCTGATCATCATCTAATCCGCCCCCGGTAGGGGGGAAAA
AATCAAAACGTTTAGGTGGGATCAAAGGCTGCAATTACATTTGTTCGATG
TCTCCCGAGTGGCCTAGTAATTAACCTGCACACCTGCTAGTGCGGAAGTC
GTGAGTTCGATTCTCAGCTTAAGCAGAATTTGTGTTCTTTCTTTCGTAAC
GGAAAGCGTGGGAACGCGAGTAAGTAAAATTCAACCATTGGTTGACGAGT
TGTAAGAGTGCTGAACTTGCATCGCGATAAAAATTGTAAGGCGTGAATCG
GGGAGAGATGGGAAGATCCTTTATGACCACAGGCAGGATGGTAAATATGA
GGCCCATCGGCTTTAAGTGTGATTAAAAAAAAAAGGCACGTGAACTCGGA
TTGCCGGGAAATTATGGAAGCCGATAAGTGTCCCGTGTTAGTTAGCGGTT
ACGTGACTCTGTTCAACAGTAAGTAGTCTAGTGTCCAACGGTTTAGCCGA
CAAGTAACAAAATATGTGTCTTGGGCTCTCTGGCCTCTTTTTCGGTGGCG
ACATGACAGTCATCTATCATCTATTTGATCTATCTATTGATCTATTTGAT
CTATCTATTGATCTATTTGTCTCCGGGGACCTCCCATCGCCACGCACTGC
AGTGTACTATTATATACTATACTATACTGTACTATACTACAGTACACTGT
ACTGTATCTCAATGTTTGCCACATCTTCGTCGCTACCGGGAATTGAACCC
GCGACTTGTATTTTGTTGATTAGCGGCTAAACCATTAGACTCCTCAGTAA
CGTTACTCAGTAGTCCAATAATTTAGCCACTGACTAACATCCCGCTCCAC
TGCTCCACTTGCTGCGACCGTTCCACTTCCCAGGAATTTTTGTTGGTGCG
GTTCCTGGAGCCATTGCTCTTGTTAGCCAAGGAAAAGGAACCGGGGCGCT
TCGTTCTCCTCAATGACGAAGAAGATGAGGTGCTAGGTCCTACTACTCAT
GCTTTGCCGTCGCCGTAGAGGATAAAATCGAGCGGCTGACGCGTAGCAGC
GCTCGAGAACCACGAGTTTGCCCTCGACTGATGCCTCCAAAGTGTTTTCT
CTTGCCCTTGTCTCGTGGGCTCGTTGCTTTGAGGAAATAGTCTATTTGTA
GGGATGATGCATCCTCGCAGATGATTGCATGTTATGGAGCCCTGAGCCAG
AACCCTCGTTTACTCTCTGACGCATGTGCCCGCGCGCGTGGTTTTGCCCT
TCAAATGTATGTCTGACAGGCTGCCAGCCCGGCTGTGGAGGCATTGCTGA
GCGAAGAAGGGCTTTAGCGGGTCCAAGTCTAGATTGCTTCAATTCCGCCA
GCTAGTTTGAAAAACTTATCGACGTATGAGTATTAGCCATTAACCATATT
ACTTTGACGATTTGACGAGTGGAAAATTCCTGGATTACTATAACATTTGC
ATCGCTGCGCAATACAATGATTCAATAAACCTCGGAGCATAGCACCGACG
CGTTACTTACTCGTGTCGTCGCGCCTGCGTCTAGCCTCTCGAAAATAATA
TCGTATTGGTAGCTCGTCGGAAGTCATTGTTCGCCCTTCGATTGACTGAG
TTACCGCTTGAAAAGCAGAAAAATGCTTCAAAC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1212:145998..151130-

>mRNA_F-serratus_M_contig1212.1680.1 ID=mRNA_F-serratus_M_contig1212.1680.1|Name=mRNA_F-serratus_M_contig1212.1680.1|organism=Fucus serratus male|type=CDS|length=1770bp|location=Sequence derived from alignment at F-serratus_M_contig1212:145998..151130- (Fucus serratus male)
ATGAGCATCAAGATATTGCGTGGCCAAGTTGTGGCAGTCTGTCTACTCTC
GTTCTTGTTCACCTCTCAGATGAGCATCAAGATATTGCGTGGCCAAGTTG
TGGCAGTCTGTCTACTCTCGTTCTTGTTCACCTCTCAGGCATTTTTCGTC
ACACCCGCAGCCGCAAGGACGGGACTGACCGCCAGCGGTCAGGGCAAAGC
CGCGAGCCCGAGCAGATGTAACAGACATGGCATCTGGTTCGACGGTAGCG
AAAGGTCTTCGCGCAGGAGGACAGGGTCTGCGTTGCAGATGGATCACCTC
GAGGAAGCATTTTTCGTCACACCCGCAGCCGCAAGGACGGGACTGACCGC
CAGCGGTCAGGGCAAAGCCGCGAGCCCGAGCAGATGTAACAGACATGGCA
TCTGGTTCGACGGTAGCGAAAGGTCTTCGCGCAGGAGGACAGGGTCTGCG
TTGCAGATGGATCACCTCGAGGAAGTGCCAGAGGAAATGTCCAACAAGGT
TCTCGAGCTGGAATGCCCAGATACGGGTGAAGTGCTGGAGTGCTACGCCG
AGCGCTTCGCGATGGTTCAAGGTCAACGTTACCTCGCCGCTTATCCCAAG
GTGCCAGAGGAAATGTCCAACAAGGTTCTCGAGCTGGAATGCCCAGATAC
GGGTGAAGTGCTGGAGTGCTACGCCGAGCGCTTCGCGATGGTTCAAGGTC
AACGTTACCTCGCCGCTTATCCCAAGGATCCCGCGGTCGCTGTCGCCTTC
GACGTGGACGGCGAAGTTGCCCCCGTCCCCATTGACGACCCTTTGATGGA
CGAGGTGTTCCCGCTCGCCCAGGCGTGCTTGAACGACCTCGGGCCTGTTA
TTACCTTACTACGGATCCCGCGGTCGCTGTCGCCTTCGACGTGGACGGCG
AAGTTGCCCCCGTCCCCATTGACGACCCTTTGATGGACGAGGTGTTCCCG
CTCGCCCAGGCGTGCTTGAACGACCTCGGGCCTGTTATTACCTTACTACG
AACACCTGCGAGCTTAACCGCGAGAGGTCTGGACGATGTAGTCGGGTCGA
TAGAAGACGAGGACGACGAGGAAGACTTTGGCGGTCCTCTTGAGGGTGAT
GATAGCGTCGAAGATGGGGCAGGTGAAGGGGGCCAAGAGGGGTTGAGCGA
GGGCGACGATAACGACGAGGACGAGGACGACGAGTTTTATGATGACGCTG
ACGAGGTCGAGCTCCTTGGAGAGTTTGTGGCGGAGGGTGAGAACACCTGC
GAGCTTAACCGCGAGAGGTCTGGACGATGTAGTCGGGTCGATAGAAGACG
AGGACGACGAGGAAGACTTTGGCGGTCCTCTTGAGGGTGATGATAGCGTC
GAAGATGGGGCAGGTGAAGGGGGCCAAGAGGGGTTGAGCGAGGGCGACGA
TAACGACGAGGACGAGGACGACGAGTTTTATGATGACGCTGACGAGGTCG
AGCTCCTTGGAGAGTTTGTGGCGGAGGGTGAGGAATTTTTGTTGGTGCGG
TTCCTGGAGCCATTGCTCTTGTTAGCCAAGGAAAAGGAACCGGGGCGCTT
CGTTCTCCTCAATGACGAAGAAGATGAGGAATTTTTGTTGGTGCGGTTCC
TGGAGCCATTGCTCTTGTTAGCCAAGGAAAAGGAACCGGGGCGCTTCGTT
CTCCTCAATGACGAAGAAGATGAGGCTGCCAGCCCGGCTGTGGAGGCATT
GCTGAGCGAAGAAGGGCTTTAGGCTGCCAGCCCGGCTGTGGAGGCATTGC
TGAGCGAAGAAGGGCTTTAG
back to top