mRNA_F-serratus_M_contig1212.1677.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1212.1677.1
Unique NamemRNA_F-serratus_M_contig1212.1677.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1212.1677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1212contigF-serratus_M_contig1212:11436..12085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size651
Cds size432
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929134.585189-UTR-F-serratus_M_contig1212:11435..116531622929134.585189-UTR-F-serratus_M_contig1212:11435..11653Fucus serratus maleUTRF-serratus_M_contig1212 11436..11653 +
1690962718.5313914-UTR-F-serratus_M_contig1212:11435..116531690962718.5313914-UTR-F-serratus_M_contig1212:11435..11653Fucus serratus maleUTRF-serratus_M_contig1212 11436..11653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929134.5983622-CDS-F-serratus_M_contig1212:11653..120851622929134.5983622-CDS-F-serratus_M_contig1212:11653..12085Fucus serratus maleCDSF-serratus_M_contig1212 11654..12085 +
1690962718.5427136-CDS-F-serratus_M_contig1212:11653..120851690962718.5427136-CDS-F-serratus_M_contig1212:11653..12085Fucus serratus maleCDSF-serratus_M_contig1212 11654..12085 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1212.1677.1prot_F-serratus_M_contig1212.1677.1Fucus serratus malepolypeptideF-serratus_M_contig1212 11654..12085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1212.1677.1

>prot_F-serratus_M_contig1212.1677.1 ID=prot_F-serratus_M_contig1212.1677.1|Name=mRNA_F-serratus_M_contig1212.1677.1|organism=Fucus serratus male|type=polypeptide|length=144bp
MNTRATRSGEWARSAGLFQGWTWLWKAGCWLARRLHQLKASTTMDLGISD
FLIFVRCLALRNLERNSSALLPRTLVVGWRQQSESIDRGCFRYGLRKIGE
PFRYWSVPLLVESHNFFVAIWIPVGLSSGLSPRCDPLTFVPVCD
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mRNA from alignment at F-serratus_M_contig1212:11436..12085+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1212.1677.1 ID=mRNA_F-serratus_M_contig1212.1677.1|Name=mRNA_F-serratus_M_contig1212.1677.1|organism=Fucus serratus male|type=mRNA|length=650bp|location=Sequence derived from alignment at F-serratus_M_contig1212:11436..12085+ (Fucus serratus male)
GGTGGTGGAACGCGAGAGGCAAGGAGAGCAGTGTTGTCGCGGAGAGCTTG
GTAGTACTCAGCATCGGGTGGGTACGCACCAGATTCGGCGAAGTCGGAGG
GCAGCTCGATCGTCGACGGGCCAGGGAGGGCTGAACCCCTGTGCGCGAGA
ATCAAAGGCGTGAAACGAGAGGTTTCTGAGTGAAAAGCTGATGTCTGACC
ACAGCCATTTTTCTTCCTATGAATACGAGGGCCACAAGGAGCGGCGAATG
GGCAAGATCTGCGGGGCTTTTTCAAGGATGGACATGGCTTTGGAAAGCTG
GATGCTGGCTCGCCCGCCGGCTTCACCAGCTCAAGGCCTCCACCACTATG
GACCTCGGTATTTCAGATTTCCTTATTTTTGTACGATGTTTGGCCTTGAG
AAACTTGGAGCGTAATTCGTCCGCTTTGTTGCCGAGAACGCTGGTCGTGG
GTTGGCGACAACAATCCGAGTCGATCGATCGAGGCTGCTTTCGATACGGA
TTAAGGAAGATTGGTGAACCGTTTCGATATTGGTCGGTGCCATTGCTTGT
AGAGTCGCACAACTTTTTTGTCGCGATTTGGATTCCTGTTGGTCTGAGTA
GCGGGTTGTCACCACGATGTGATCCGTTGACCTTCGTACCTGTTTGTGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1212:11436..12085+

>mRNA_F-serratus_M_contig1212.1677.1 ID=mRNA_F-serratus_M_contig1212.1677.1|Name=mRNA_F-serratus_M_contig1212.1677.1|organism=Fucus serratus male|type=CDS|length=864bp|location=Sequence derived from alignment at F-serratus_M_contig1212:11436..12085+ (Fucus serratus male)
ATGAATACGAGGGCCACAAGGAGCGGCGAATGGGCAAGATCTGCGGGGCT
TTTTCAAGGATGGACATGGCTTTGGAAAGCTGGATGCTGGCTCGCCCGCC
GGCTTCACCAGCTCAAGGCCTCCACCACTATGGACCTCGGTATTTCAGAT
TTCCTTATTTTTGTACGATGTTTGGCCTTGAGAAACTTGGAGCGTAATTC
GTCCGCTTTGTTGCCGAGAACGCTGGTCGTGGGTTGGCGACAACAATCCG
AGTCGATCGATCGAGGCTGCTTTCGATACGGATTAAGGAAGATTGGTGAA
CCGTTTCGATATTGGTCGGTGCCATTGCTTGTAGAGTCGCACAACTTTTT
TGTCGCGATTTGGATTCCTGTTGGTCTGAGTAGCGGGTTGTCACCACGAT
GTGATCCGTTGACCTTCGTACCTGTTTGTGACATGAATACGAGGGCCACA
AGGAGCGGCGAATGGGCAAGATCTGCGGGGCTTTTTCAAGGATGGACATG
GCTTTGGAAAGCTGGATGCTGGCTCGCCCGCCGGCTTCACCAGCTCAAGG
CCTCCACCACTATGGACCTCGGTATTTCAGATTTCCTTATTTTTGTACGA
TGTTTGGCCTTGAGAAACTTGGAGCGTAATTCGTCCGCTTTGTTGCCGAG
AACGCTGGTCGTGGGTTGGCGACAACAATCCGAGTCGATCGATCGAGGCT
GCTTTCGATACGGATTAAGGAAGATTGGTGAACCGTTTCGATATTGGTCG
GTGCCATTGCTTGTAGAGTCGCACAACTTTTTTGTCGCGATTTGGATTCC
TGTTGGTCTGAGTAGCGGGTTGTCACCACGATGTGATCCGTTGACCTTCG
TACCTGTTTGTGAC
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