mRNA_F-serratus_M_contig1212.1679.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1212.1679.1
Unique NamemRNA_F-serratus_M_contig1212.1679.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1212.1679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1212contigF-serratus_M_contig1212:110091..111181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size525
Cds size282
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1212.1679.1prot_F-serratus_M_contig1212.1679.1Fucus serratus malepolypeptideF-serratus_M_contig1212 110091..110938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929134.5133865-CDS-F-serratus_M_contig1212:110090..1101511622929134.5133865-CDS-F-serratus_M_contig1212:110090..110151Fucus serratus maleCDSF-serratus_M_contig1212 110091..110151 +
1690962718.4971101-CDS-F-serratus_M_contig1212:110090..1101511690962718.4971101-CDS-F-serratus_M_contig1212:110090..110151Fucus serratus maleCDSF-serratus_M_contig1212 110091..110151 +
1622929134.525868-CDS-F-serratus_M_contig1212:110717..1109381622929134.525868-CDS-F-serratus_M_contig1212:110717..110938Fucus serratus maleCDSF-serratus_M_contig1212 110718..110938 +
1690962718.5059316-CDS-F-serratus_M_contig1212:110717..1109381690962718.5059316-CDS-F-serratus_M_contig1212:110717..110938Fucus serratus maleCDSF-serratus_M_contig1212 110718..110938 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929134.5392427-UTR-F-serratus_M_contig1212:110938..1111811622929134.5392427-UTR-F-serratus_M_contig1212:110938..111181Fucus serratus maleUTRF-serratus_M_contig1212 110939..111181 +
1690962718.5151005-UTR-F-serratus_M_contig1212:110938..1111811690962718.5151005-UTR-F-serratus_M_contig1212:110938..111181Fucus serratus maleUTRF-serratus_M_contig1212 110939..111181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1212.1679.1

>prot_F-serratus_M_contig1212.1679.1 ID=prot_F-serratus_M_contig1212.1679.1|Name=mRNA_F-serratus_M_contig1212.1679.1|organism=Fucus serratus male|type=polypeptide|length=94bp
RASEKRLGGGLISSGPFWREGKKSSFRGHRLTQTKIRLDTGSRADFTSSR
PPPPWTSIFQFFLFLYDCVALRNLDFLLIKTTGSWSVILPFFC*
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mRNA from alignment at F-serratus_M_contig1212:110091..111181+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1212.1679.1 ID=mRNA_F-serratus_M_contig1212.1679.1|Name=mRNA_F-serratus_M_contig1212.1679.1|organism=Fucus serratus male|type=mRNA|length=1091bp|location=Sequence derived from alignment at F-serratus_M_contig1212:110091..111181+ (Fucus serratus male)
CGAGCATCGGAAAAACGCCTTGGTGGTGGCCTCATCAGCAGCGGACCTTT
TTGGAGAGAAGGTGACCTACTTATTGCTCAGCTTATGCGAGACACAACAC
CCTAAAAACCTGACAAGTTTTTTACATCTACCGGCCCATGTAGTCTGACC
AACTATTACTTATGTTATGTAAGTATTGCACCTCAAAACATGACAAGTTG
AACGTCAACCTCAACGACACACGAGGCTAGCTAACTCCCGTAGTTCCTGT
CTCCACGCGCATCCCGAGCTGTTGATCAAGTGCCTTTGCTATTAATAGCC
GAGATGAGCTGTTGTTTGTCGGACCAGTTCGGCTTGTATTCTCATTCCTG
CAAGGGGCTGTAGTCTACACAGTCAGTATAGATTTATATCTAGAGCTGCA
TGTTTTTGGAGCTCTTCCATCTATTCGCAAAAAATATGGAATTCTCAAGA
GTCGGCGGGATTCATTGTATTTTCAGGTCTTTTTTTGAAGAAAATACAGA
ACGCACCTAGACCATCTGAGCATCCCCCAGTCAGGGGGAAAAAATGTCAA
AACGTTCAGGTTTGTTGTCTTCACATTCCAAGCCGTTCTGACCTCTATCC
AGTACCTTCTCTTTTTTACTCTTCAAGGCAAAAAATCGAGTTTCCGTGGT
CACAGGCTAACCCAAACTAAGATACGGCTGGATACTGGCTCGCGCGCCGA
CTTCACCAGCTCAAGGCCTCCACCACCATGGACCTCGATATTTCAATTTT
TCTTATTTCTGTACGATTGTGTGGCCTTGAGAAACTTGGACTTTTTGTTG
ATCAAAACTACAGGTAGTTGGAGCGTAATTCTTCCGTTTTTTTGCTGAGA
ACGCTGGTCGTGGGTAAGCGATAACAATCCGAGTCGATGGAGGTTGCTCT
CGATATGGAGTAAGGATGTTTGATGAACCGTTTGATGATATCGGTCGGTG
TCATTGCCTGTAGAGTCACATAACTTTTTGTCGCGATTTGGATCCCTGTT
GGTCTGAGTAGCGGGTTGCCACCATGATGTGGCCCGTTGACCTTTGTACC
TCTTTGTGACCACAAGCGGGATTAGCATTTGATAGGACTAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1212:110091..111181+

>mRNA_F-serratus_M_contig1212.1679.1 ID=mRNA_F-serratus_M_contig1212.1679.1|Name=mRNA_F-serratus_M_contig1212.1679.1|organism=Fucus serratus male|type=CDS|length=564bp|location=Sequence derived from alignment at F-serratus_M_contig1212:110091..111181+ (Fucus serratus male)
CGAGCATCGGAAAAACGCCTTGGTGGTGGCCTCATCAGCAGCGGACCTTT
TTGGAGAGAAGCGAGCATCGGAAAAACGCCTTGGTGGTGGCCTCATCAGC
AGCGGACCTTTTTGGAGAGAAGGCAAAAAATCGAGTTTCCGTGGTCACAG
GCTAACCCAAACTAAGATACGGCTGGATACTGGCTCGCGCGCCGACTTCA
CCAGCTCAAGGCCTCCACCACCATGGACCTCGATATTTCAATTTTTCTTA
TTTCTGTACGATTGTGTGGCCTTGAGAAACTTGGACTTTTTGTTGATCAA
AACTACAGGTAGTTGGAGCGTAATTCTTCCGTTTTTTTGCTGAGCAAAAA
ATCGAGTTTCCGTGGTCACAGGCTAACCCAAACTAAGATACGGCTGGATA
CTGGCTCGCGCGCCGACTTCACCAGCTCAAGGCCTCCACCACCATGGACC
TCGATATTTCAATTTTTCTTATTTCTGTACGATTGTGTGGCCTTGAGAAA
CTTGGACTTTTTGTTGATCAAAACTACAGGTAGTTGGAGCGTAATTCTTC
CGTTTTTTTGCTGA
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