mRNA_F-serratus_M_contig1211.1672.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1211.1672.1
Unique NamemRNA_F-serratus_M_contig1211.1672.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1211.1672.1 vs. uniprot
Match: A0A6H5JCY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY4_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 4.230e-23
Identity = 55/101 (54.46%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:   10 PESLLNAGGSVWGIDTLVRPSKRGGGGKSDGWDLYLAVATGPFRQTDVPIDEMDAF---LPPQDGRS-PLPTMGQRASGPGLLQIWRAKNASTGFEPPSSP 300
            PE++LNA GSVW +DTL+R    GGGG S G DL+LAV TGP RQTD PI+E D F   +P   G+  PLP +G+R +GP LLQIWRAK+  +   P   P
Sbjct:  480 PEAVLNAAGSVWDVDTLLRQG--GGGGTSAGLDLFLAVGTGPLRQTDHPIEEADVFSSGVPYIHGQPCPLPLIGKRTTGPALLQIWRAKDVCSVLTPSRPP 578
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1211.1672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JCY4_9PHAE4.230e-2354.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1211contigF-serratus_M_contig1211:228296..230922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size303
Cds size300
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1211.1672.1prot_F-serratus_M_contig1211.1672.1Fucus serratus malepolypeptideF-serratus_M_contig1211 228296..230920 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929133.9953425-CDS-F-serratus_M_contig1211:228295..2284601622929133.9953425-CDS-F-serratus_M_contig1211:228295..228460Fucus serratus maleCDSF-serratus_M_contig1211 228296..228460 +
1690962718.1780324-CDS-F-serratus_M_contig1211:228295..2284601690962718.1780324-CDS-F-serratus_M_contig1211:228295..228460Fucus serratus maleCDSF-serratus_M_contig1211 228296..228460 +
1622929134.0101883-CDS-F-serratus_M_contig1211:229029..2291131622929134.0101883-CDS-F-serratus_M_contig1211:229029..229113Fucus serratus maleCDSF-serratus_M_contig1211 229030..229113 +
1690962718.185957-CDS-F-serratus_M_contig1211:229029..2291131690962718.185957-CDS-F-serratus_M_contig1211:229029..229113Fucus serratus maleCDSF-serratus_M_contig1211 229030..229113 +
1622929134.0228467-CDS-F-serratus_M_contig1211:230869..2309201622929134.0228467-CDS-F-serratus_M_contig1211:230869..230920Fucus serratus maleCDSF-serratus_M_contig1211 230870..230920 +
1690962718.1967187-CDS-F-serratus_M_contig1211:230869..2309201690962718.1967187-CDS-F-serratus_M_contig1211:230869..230920Fucus serratus maleCDSF-serratus_M_contig1211 230870..230920 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1211.1672.1

>prot_F-serratus_M_contig1211.1672.1 ID=prot_F-serratus_M_contig1211.1672.1|Name=mRNA_F-serratus_M_contig1211.1672.1|organism=Fucus serratus male|type=polypeptide|length=100bp
GEAPESLLNAGGSVWGIDTLVRPSKRGGGGKSDGWDLYLAVATGPFRQTD
VPIDEMDAFLPPQDGRSPLPTMGQRASGPGLLQIWRAKNASTGFEPPSSP
back to top

mRNA from alignment at F-serratus_M_contig1211:228296..230922+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1211.1672.1 ID=mRNA_F-serratus_M_contig1211.1672.1|Name=mRNA_F-serratus_M_contig1211.1672.1|organism=Fucus serratus male|type=mRNA|length=2627bp|location=Sequence derived from alignment at F-serratus_M_contig1211:228296..230922+ (Fucus serratus male)
GGAGAGGCACCCGAATCCCTCCTCAACGCTGGCGGTAGCGTGTGGGGCAT
CGATACCTTGGTGCGTCCGAGCAAGAGGGGTGGCGGCGGGAAAAGTGACG
GCTGGGACTTGTACCTGGCGGTGGCCACCGGACCGTTCCGTCAGACGGAC
GTCCCGATCGACGAGGTGGGGCTCTTTTGAGGGCACAGGACCGCCTGCGT
ATGTGCCTCATCGATGCGTGTAGCCTTCTTGGTGTAGAGAGACTGCAAAT
ACGCCGACACCAACCTAAAATAAAAAGGATGGAGGCGTTTTTTTTTCACA
CTACCTATTGTGTTATTAAAGAGAAGTAGCGCAGGTGTCACACAGTAAAC
CAGCCTTACTTTGATTGACAGACTCCACTTGTTTCGCTCGTTTTTTCATG
GGGCCCCGGGGACGCCAGTCCCAGGCCCCCGCGCTCTACGGAGATGATTG
GAGGCGAGGGACGCTCCTAAAGCGTAGTAGAAATAGTTAATTACCTACGT
GTAACTGCCATCGATTCAATACAGGACACATGGAAGGTACTGCCAAAAAA
ACATAAAGAAACGTTAAGTCGTTTGGCTTTAAATTCGCCAGGGGACTGGT
TTAAATGCGCGCCCGCGTTAAGTTAAATACCTTTGTTGTTCAGCAAGAAA
TGCCTCCGTCGTCTCTCCTCGCCGCAACTGCGATCGCCCTCATCTTCTGC
TGCTGCCTCCTTCTCCTGCCCCCCCGCCCCCCAGATGGACGCGTTTTTAC
CCCCACAAGACGGACGGTCACCCCTGCCCACGATGGGACAGCGCGCGTCG
GGACCGGGTCTCTTGCAGGCGAGAACCATAGTTCCCGCTAACGGCCGCAG
ACGATCCCGCCGCTAAAACCCATCCTTTTGAGTGAAGGGCGTATAGTATC
CATGCTAGAGAACTCCCCCCCCCTGCGCGCACGCCTCCTCATACCTATAT
AGCACGCCTTTTTTTTCTGACATTATCCCTGCGTGTGAGCAGGAGATCTC
ATATTAGCCAAATAAGAATGTAAAATTGAGTTTTGGAAAGTGCAGATCGT
CGTCGGGCGTTCCTTTCCACTCAAAACCGAAGTTCTTTTCCTTCAAAACC
GGATGTAATTTGTGGCATCAGGGATGTTGTACGAACGGCTTAACCCGCTG
TTTTGAGCCATATCCCATGCACTGTTTGTACCATCTCATGACAATTTCTT
GATTCCCATGTGTTTTGAAGCTACCCTGATATTGGCGCGCGTGCTGAATC
AACCGCTTCTCACGATAGCATCTCGTGACAATTTCTTGATTCCCATGTGT
TTTGAATTGATATTGGCGCGCGTGCTGAATCAACCGCTTCTCACGATAGA
CACGTTACCACTGTTATTTTTTGTGGGCAATCTCACCCTCTGCCAATGGA
CTTAAATCAACGCGCTACAGCAAAACATAAAAAAAAATGTTGTACCAGCA
AGATTCGAACTCACAAATTTCTCTTGAGGGGTTTACGTCTTAAAACCGTC
AAGGTACACTTTTGAGCACGACAACGGGAATGTACGTGAGGCTAATTGTT
TTATGATTTAAAAACTGGGTCTGGATTTTGTGATATTTTGAGCTCAAACC
CTAGGGACCTCAGATTTCGGAAAATCGGAGCGACCGGTGTTCTGTGCTGA
ATGAAAACAATGTTCGGTTTTGGTTACACGGCTAGCGAACGGCCTTGGGG
TTGATGCGCTGCGATTTCAAACGCGGCGTGCGATCGGCCTGACTACAAAA
ACCCTAACCATTTGTAAGCCTAGGGTCACGTAAGACGTGTTCCGGGCCTA
TAATAACTCGACCTGTTCAACAACGGCTATATCAGAGCTGTTATAAGTGA
TGTGCTGTTCAACGACGGCTGTTTTGAACAAAGCAACGTACTTGTTGTAG
AGACTTCTCAGATTTTATAATGCCCCGGGTGTCATAGTCGTGAGAGGAGA
GGAGAGCAAACTTTGAGCACGTCCTGGTTGCCCTATTACAGAATTTTTGC
CTGGAAACCACGCAATCCGTTGGTGTAGAATTGTGTTGATTCGATTCTCG
ACAGGATGGTTCCATTTTTTTAAAGTTTTTTTTTCCTTGGGCGGAAAGCG
CGAGAGCTTTGGGTAGGCAAAGTTCAACCTTTGCTTGATAAGGAGCAGTA
AGCAGGGGTGCTGAAGTTGCGTCGCGATGGGAAGAAAAAATCGCTGGCGT
GTTCGAACCGGGGAGAGCGGGTTCGATCCCTCAGTGAGCACAGGCAGGAT
ATGGGCAACGTAACGTTACAGTAGGTAGGGTCGGCCATCGATATGTGTGA
CCATACATACATATAGGCCCCATCCGAAACAATCGAGAGAAAAATACACA
CCCCCCCCCCCCCCCCCCCCCCGCCGCCGCCGAAAGTGCGTTCGTCTACG
AGTATGGGGACAGGCTCGATTCATCCCCGGGCACAACGCAACGAAATCGT
TTGAATTTTCCGTGTCAGGGAATAAATAGACTTACATACCCAAAAGGGCA
TATGTGGAGACACGGCCCCCGGCCTCGGGGCTCACCGATCGAATACTGTA
CCTCTTGCTCTCTCTGACTCGCAGATCTGGCGCGCGAAGAACGCCTCCAC
GGGGTTTGAACCGCCCTCGTCGCCTCA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1211:228296..230922+

>mRNA_F-serratus_M_contig1211.1672.1 ID=mRNA_F-serratus_M_contig1211.1672.1|Name=mRNA_F-serratus_M_contig1211.1672.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig1211:228296..230922+ (Fucus serratus male)
GGAGAGGCACCCGAATCCCTCCTCAACGCTGGCGGTAGCGTGTGGGGCAT
CGATACCTTGGTGCGTCCGAGCAAGAGGGGTGGCGGCGGGAAAAGTGACG
GCTGGGACTTGTACCTGGCGGTGGCCACCGGACCGTTCCGTCAGACGGAC
GTCCCGATCGACGAGGGAGAGGCACCCGAATCCCTCCTCAACGCTGGCGG
TAGCGTGTGGGGCATCGATACCTTGGTGCGTCCGAGCAAGAGGGGTGGCG
GCGGGAAAAGTGACGGCTGGGACTTGTACCTGGCGGTGGCCACCGGACCG
TTCCGTCAGACGGACGTCCCGATCGACGAGATGGACGCGTTTTTACCCCC
ACAAGACGGACGGTCACCCCTGCCCACGATGGGACAGCGCGCGTCGGGAC
CGGGTCTCTTGCAGATGGACGCGTTTTTACCCCCACAAGACGGACGGTCA
CCCCTGCCCACGATGGGACAGCGCGCGTCGGGACCGGGTCTCTTGCAGAT
CTGGCGCGCGAAGAACGCCTCCACGGGGTTTGAACCGCCCTCGTCGCCTA
TCTGGCGCGCGAAGAACGCCTCCACGGGGTTTGAACCGCCCTCGTCGCCT
back to top