mRNA_F-serratus_M_contig1211.1666.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1211.1666.1
Unique NamemRNA_F-serratus_M_contig1211.1666.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1211.1666.1 vs. uniprot
Match: D8LDF5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF5_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 2.550e-54
Identity = 89/120 (74.17%), Postives = 98/120 (81.67%), Query Frame = 1 
Query:    1 RLSFKGFVGAGKGTVEYRACGDREGKGRWLTKPKNIVNGRITLSARWKVNFSDGTSLLYRGDVVQDPG--GNPLVLDPSGAVLEVKTVSPRPDAHIRGEVLLPTTNVQGTLSERQIGEFE 354
            RLSFKGFVGAGKGTVEY+ CGDREGKGRWLTKPKNIVNGRITLSARW VNF+DGT+LLYRGDVVQD    G  L +D SGA         RPDAHIRGEVL P  N+QG+L+E++IGEFE
Sbjct:  218 RLSFKGFVGAGKGTVEYKGCGDREGKGRWLTKPKNIVNGRITLSARWSVNFTDGTTLLYRGDVVQDAEAQGTALTVDTSGAAAMGGPAFERPDAHIRGEVLRPVKNIQGSLTEKKIGEFE 337
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BLAST of mRNA_F-serratus_M_contig1211.1666.1 vs. uniprot
Match: W7TK28_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TK28_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.960e-24
Identity = 55/119 (46.22%), Postives = 70/119 (58.82%), Query Frame = 1 
Query:    1 RLSFKGFVGA-GKGTVEYRACGDREGKGRWLTKPKNIVNGRITLSARWKVNFSDGTSLLYRGDVVQDPGGNPLVLDPSGAVLEVKTVSPRPDAHIRGEVLLPTTNVQGTLSERQIGEFE 354
            R+  +GFV    KGT+EY  C D +GKG WL KP  I NG+I  SARWKV FSDG SL+YRGDV+   GGN      S ++ +             GE+L P T + G LSE+++G FE
Sbjct:  151 RIKMRGFVEEPNKGTLEYTGCNDGKGKGNWLLKPARIANGQIRFSARWKVRFSDGESLIYRGDVLA--GGN--YAKASASITD-------------GEILKPFTGITGNLSEKKVGTFE 252
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BLAST of mRNA_F-serratus_M_contig1211.1666.1 vs. uniprot
Match: A0A7S2Y0F9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0F9_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.610e-22
Identity = 50/115 (43.48%), Postives = 67/115 (58.26%), Query Frame = 1 
Query:    1 RLSFKGFVGAGKGTVEYRACGDREGKGRWLTKPKNIVNGRITLSARWKVNFSDGTSLLYRGDVVQDPGGNPLVLDPSGAVLEVKTVSPRPDAHIRGEVLLPTTNVQGTLSERQIG 345
            +L F GFV    GTV+Y  C DR+G G+WL KP  I  G++  SARWK+ F+DGT+L+Y GD           L  SG V E      +PD+ + GE+L+P TN  G +SE+  G
Sbjct:  153 QLKFDGFVDQMGGTVKYEGCNDRKGSGKWLLKPIRIQEGKVLYSARWKLKFTDGTTLIYVGD-----------LRTSGYVTE------KPDSTMSGEILIPVTNKAGIMSEKSSG 250
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BLAST of mRNA_F-serratus_M_contig1211.1666.1 vs. uniprot
Match: A0A6T5NYX6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NYX6_HETAK)

HSP 1 Score: 96.3 bits (238), Expect = 8.020e-22
Identity = 52/117 (44.44%), Postives = 68/117 (58.12%), Query Frame = 1 
Query:   10 FKGFVGAGKGTVEYRA-----CGDREGKGRWLTKPKNIVNGRITLSARWKVNFSDGTSLLYRGDVVQDPGGNPLVLDPSGAVLEVKTVSPRPDAHIRGEVLLPTTNVQGTLSERQIG 345
            F+GF    KGT+EY A     C  R GKG WL KP  + NG+I LSARWK+ F+DGT+L+Y+GDV           D +G + +      RPDA I GE+L+P     G+LSE+  G
Sbjct:  158 FRGFEDEPKGTLEYAAAPGGGCEGRAGKGNWLVKPGRVSNGQIILSARWKIKFNDGTTLIYKGDV-----------DVTGRLRD------RPDASIDGEILIPVKTQAGSLSEKNSG 257
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1211.1666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LDF5_ECTSI2.550e-5474.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TK28_9STRA2.960e-2446.22Uncharacterized protein n=4 Tax=Monodopsidaceae Ta... [more]
A0A7S2Y0F9_9STRA2.610e-2243.48Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6T5NYX6_HETAK8.020e-2244.44Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1211contigF-serratus_M_contig1211:96389..98475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_000810.1
Exons2
Model size356
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929133.2459633-CDS-F-serratus_M_contig1211:96388..965071622929133.2459633-CDS-F-serratus_M_contig1211:96388..96507Fucus serratus maleCDSF-serratus_M_contig1211 96389..96507 +
1690962717.9270937-CDS-F-serratus_M_contig1211:96388..965071690962717.9270937-CDS-F-serratus_M_contig1211:96388..96507Fucus serratus maleCDSF-serratus_M_contig1211 96389..96507 +
1622929133.2621133-CDS-F-serratus_M_contig1211:98238..984731622929133.2621133-CDS-F-serratus_M_contig1211:98238..98473Fucus serratus maleCDSF-serratus_M_contig1211 98239..98473 +
1690962717.9350352-CDS-F-serratus_M_contig1211:98238..984731690962717.9350352-CDS-F-serratus_M_contig1211:98238..98473Fucus serratus maleCDSF-serratus_M_contig1211 98239..98473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1211.1666.1prot_F-serratus_M_contig1211.1666.1Fucus serratus malepolypeptideF-serratus_M_contig1211 96389..98473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1211.1666.1

>prot_F-serratus_M_contig1211.1666.1 ID=prot_F-serratus_M_contig1211.1666.1|Name=mRNA_F-serratus_M_contig1211.1666.1|organism=Fucus serratus male|type=polypeptide|length=118bp
RLSFKGFVGAGKGTVEYRACGDREGKGRWLTKPKNIVNGRITLSARWKVN
FSDGTSLLYRGDVVQDPGGNPLVLDPSGAVLEVKTVSPRPDAHIRGEVLL
PTTNVQGTLSERQIGEFE
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mRNA from alignment at F-serratus_M_contig1211:96389..98475+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1211.1666.1 ID=mRNA_F-serratus_M_contig1211.1666.1|Name=mRNA_F-serratus_M_contig1211.1666.1|organism=Fucus serratus male|type=mRNA|length=2087bp|location=Sequence derived from alignment at F-serratus_M_contig1211:96389..98475+ (Fucus serratus male)
CGTCTGTCCTTCAAGGGCTTCGTGGGTGCGGGCAAGGGCACAGTGGAGTA
CCGAGCCTGCGGCGATCGAGAGGGGAAGGGACGATGGCTTACCAAGCCAA
AGAACATCGTCAACGGAAGGTGGGTGTTGATGTGTGCCGCAGGAGGTGAA
AATGGGGAACACATGAAATAAACAAACACGCCACCCGTCAAATGGAAACC
CCATATTTTATATTCTTACCCTCCTTCGAGTACTGGACTCCCAATTTCTC
CGCAAGATATCACGCATGGAAGTTTGGTGCGTACGTGTGCCGCAGGGAGG
GGGCGACAGCATAAAAATGTTCAAGAGCCCCCTTCCCCTCCGGGGGAAAT
GGAAACCCCTCGTTTATAGTCTGGCCCTCCTACTGGACGCCAAGTTTCTC
GGTGGCACAGCAGCACACGCAATACCGTACCTGTAAAAGCTACTTCATAC
CTCTAGTGTAGCTATTTTTTTCACGGGGGTTATTGTTTTCTCGCGTGACT
TTCTCGGCCATCTTGCCTTCCCTGCGTATAATAGTACCAGTGGAAGTTTG
GGCGGGAGGGGATTGCCCATCCAACCCCGCGGTGGCGCTTTTGGGGACCT
CTTTTGAACATCCCTCCAGATAAGTACAGCCGGCGGCACTGTTGGTGTCG
TTTCGTGCTTCCTTCGAGCTGTAATCGCATGTTTATATTTTTTGGGCGAA
AAAGCCTTGCTCCCGTGCTGTGGCTGGTAACCCCGGACGTGCGGCCCCGC
GCGGTACGCCACCCTTAAATTTTGGGCAGCTTCGTTGGAGAGGTTTTGAC
AAGAGTTGTCGTCAACCTTGCGCGGGAGGTTGCGGTTATGTCTGTCGAAG
AAGGCAGGTTGTACTGCCTTACTGTCGATAAGAGAGATGGCGGAACACTT
TCTGTGGGAGAACCTCTCCCTGCATTTTCCGTGCACCTTCTCCTGTTCAG
GTTCATGACGTCATACGATGCCCTTGGACGAGGCGGCGGCACCTTTTATC
CCGATGTGTAGATGCTCGAGGGTTGCCCCGTTCGATCGGCGGGCACGAGG
AAAATCTTCACTTTCCATCCCGACCGACCGAGGCAAATAATCATCTCTTG
TCGAAACCCGCTCGGTCAAACTTCCTGTCCTAGCTATCCAATCTGAAACC
GCCGGGGTACGCCATCTAGGGCAGCAGAGATCCGATACTCACATACCATA
CAAGTAGGCTTAATTTTTTTTTTCAGAACAAGTTCCAGTCTTTGAAGTTT
TTGCCATGTCGGTTCTGACATTCCCGCGGATCATGGTTGGCCGCACGTCA
CGCCCTTCTGTGATCCGGCCCACTAATCAGCGGTTGACACTCCCAAAACT
GCCTTGAAGCGGTTTACGGGAGCGTTCGTGCTGAGCCGTTTTAGTCGCGG
CCAGTTTTACCGTTTGTCCGGCCGGAACCGTACTCATATCCTTCCTGAAA
TCTTGAGACGCCTTGCTACAGCGATGAGATACTCCAAGAAACAGAAACAT
GAGCCGTGTGGCGCGCAGGAAAGTCGTTTTCAGCCATTTTTTCGGTGGGT
AAAGGCTCTTTTGCTCCCCCCAGTGAAAATCCGATCGAGAGAAAATTTCG
CTTGATTTCATCATATCTCATCCCGTCCCACCTCATCCCATCTCGTCTCC
CTTCAATCCATGCCAACCCATCTCATTCCATGTCAACCCATTCCAGCCCA
TGTCAACTCGTGATAGATCGTTCCATTCCCCTCTCGTCCCCTCACATCCC
ATCCCATCAATCCCATCCCGTCCCGTCCCGTCCCGTCCCGTCCCGTCCCG
TCCCGTCCAAATCTCTCTTTTTCCCTTCTCTGCGTATAACCGATCGGCAG
AATCACCCTCTCGGCGCGCTGGAAAGTCAACTTCTCGGACGGCACGTCCC
TGCTCTACCGAGGCGACGTCGTCCAGGATCCCGGGGGCAACCCCCTGGTT
CTGGACCCCAGCGGGGCAGTGTTGGAGGTGAAAACCGTGTCGCCGAGGCC
AGACGCTCACATCCGCGGGGAAGTTTTGCTCCCGACCACGAACGTTCAGG
GGACGCTATCCGAGCGGCAGATCGGGGAGTTCGAGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1211:96389..98475+

>mRNA_F-serratus_M_contig1211.1666.1 ID=mRNA_F-serratus_M_contig1211.1666.1|Name=mRNA_F-serratus_M_contig1211.1666.1|organism=Fucus serratus male|type=CDS|length=708bp|location=Sequence derived from alignment at F-serratus_M_contig1211:96389..98475+ (Fucus serratus male)
CGTCTGTCCTTCAAGGGCTTCGTGGGTGCGGGCAAGGGCACAGTGGAGTA
CCGAGCCTGCGGCGATCGAGAGGGGAAGGGACGATGGCTTACCAAGCCAA
AGAACATCGTCAACGGAAGCGTCTGTCCTTCAAGGGCTTCGTGGGTGCGG
GCAAGGGCACAGTGGAGTACCGAGCCTGCGGCGATCGAGAGGGGAAGGGA
CGATGGCTTACCAAGCCAAAGAACATCGTCAACGGAAGAATCACCCTCTC
GGCGCGCTGGAAAGTCAACTTCTCGGACGGCACGTCCCTGCTCTACCGAG
GCGACGTCGTCCAGGATCCCGGGGGCAACCCCCTGGTTCTGGACCCCAGC
GGGGCAGTGTTGGAGGTGAAAACCGTGTCGCCGAGGCCAGACGCTCACAT
CCGCGGGGAAGTTTTGCTCCCGACCACGAACGTTCAGGGGACGCTATCCG
AGCGGCAGATCGGGGAGTTCGAGAATCACCCTCTCGGCGCGCTGGAAAGT
CAACTTCTCGGACGGCACGTCCCTGCTCTACCGAGGCGACGTCGTCCAGG
ATCCCGGGGGCAACCCCCTGGTTCTGGACCCCAGCGGGGCAGTGTTGGAG
GTGAAAACCGTGTCGCCGAGGCCAGACGCTCACATCCGCGGGGAAGTTTT
GCTCCCGACCACGAACGTTCAGGGGACGCTATCCGAGCGGCAGATCGGGG
AGTTCGAG
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