mRNA_F-serratus_M_contig1211.1664.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1211.1664.1
Unique NamemRNA_F-serratus_M_contig1211.1664.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1211.1664.1 vs. uniprot
Match: D8LDF3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF3_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 2.260e-55
Identity = 85/138 (61.59%), Postives = 110/138 (79.71%), Query Frame = 2 
Query:  293 EASNPGEDFEFSGVRSTLFILGLIAVVFFISWHFARAYMTLVGTLFISGGKGEGIKKPEVNLHAMYTGSRAVLVLWCILFTCFLIIEDNGFDYRGALLAWVLSLLAVFPVPVSLAWLGITTGIFIQGIGSNRLRFLGC 706
            +  N G+DFEFS +RST+F+ GLIA V  ++WHFARA++TL G   +SGG    ++ P+ +LH +Y+ SR V++ WCILFT F+I ED+GFDYRGALLAW+LSL+AVFP PVS  WLG+ TGIF+QGIG+NRLRFLGC
Sbjct:  105 DKDNEGKDFEFSALRSTIFVFGLIAAVLLVAWHFARAWLTLPGMQLLSGGVK--VEPPKEDLHGIYSSSRIVIIAWCILFTSFIISEDDGFDYRGALLAWMLSLIAVFPHPVSYIWLGVNTGIFLQGIGANRLRFLGC 240
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BLAST of mRNA_F-serratus_M_contig1211.1664.1 vs. uniprot
Match: D7G1P1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1P1_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.870e-19
Identity = 53/140 (37.86%), Postives = 76/140 (54.29%), Query Frame = 2 
Query:  281 WVGSEASNPGEDFEFSGVRSTLFILGLIAVVFFISWHFARAYMTLVGTLFISGGKGEGIKKPEVNLHAMYTGSRAVLVLWCILFTCFLIIEDNGFDYRGALLAWVLSLLAVFPVPVSLAWLGITTGIFIQGIGSNRLRFL 700
            W      N   D+  S +   + ++  + V+  +++HFA A+ TL G  ++SG     I   E NLH +Y  SR ++V + +L+  F   E +G      LLAWVLSL A F    S+ WL + TG+FIQG GS RLRFL
Sbjct:  128 WFQDMRFNDNSDWRDSHIVMAVVLITFVLVI--VAYHFAEAWRTLPGAYYVSGNINLDIVIEE-NLHRIYNVSRGLIVSYALLYGAFAFEEGDGLKQHYVLLAWVLSLTAQFKSKPSIIWLALCTGVFIQGFGSYRLRFL 264
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BLAST of mRNA_F-serratus_M_contig1211.1664.1 vs. uniprot
Match: D8LDF2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF2_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 5.550e-16
Identity = 48/116 (41.38%), Postives = 72/116 (62.07%), Query Frame = 2 
Query:  344 LFILGLIAVVFFISWHFARAYMTLVGTLFISGGKGEGIKKPEV--NLHAMYTGSRAVLVLWCILFTCFLIIEDNGFDYRGALLAWVLSLLAVFPVPVSLAWLGITTGIFIQGIGSN 685
            +FI+ LI  V  +  HFA A+  L G   ISG    G+ + EV  +L ++Y  SR +++ + IL+  F +  D+G+ Y+  LLAWVLSL A F   +S+ WL +TTG+F+QGIG+ 
Sbjct:  150 IFIILLILTVVVLLLHFAEAWKVLPGAHLISG---VGVPRVEVREDLLSIYVASRMLILAYFILYAAFSVARDDGWGYQLYLLAWVLSLFAQFKSFISVFWLAVTTGVFLQGIGNQ 262
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BLAST of mRNA_F-serratus_M_contig1211.1664.1 vs. uniprot
Match: D7G1N8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1N8_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 5.520e-15
Identity = 47/143 (32.87%), Postives = 79/143 (55.24%), Query Frame = 2 
Query:  302 NPGEDFEFSGVRSTLFILGLIAVVFFISWHFARAYMTLVGTLFISGGKGEGIKKPEV----------NLHAMYTGSRAVLVLWCILFTCFLIIEDNGFDYRGALLAWVLSLLAVFPVPVSLAWLGITTGIFIQGIGSNRLRFL 700
            +PG +   +    ++ +L L+A+VF  ++H+  A+  L G     G  G G+   +V          N +  Y  S  V++++ +LF+ F     + +DY   LLAW++SL+A F   +S+AWLGITTG+F+QG+G+   R L
Sbjct:   11 DPGGELSPAEAALSIILLVLVALVF--AYHYFLAWKFLPG-----GWLGWGMVSGQVAEPPPPSRAENRYLQYMASITVIMVYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFRVL 146
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BLAST of mRNA_F-serratus_M_contig1211.1664.1 vs. uniprot
Match: A0A6H5JMR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR1_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 8.260e-15
Identity = 49/143 (34.27%), Postives = 79/143 (55.24%), Query Frame = 2 
Query:  302 NPGEDFEFSGVRSTLFILGLIAVVFFISWHFARAYMTLVGTLFISGGKGEGIKKPEV----------NLHAMYTGSRAVLVLWCILFTCFLIIEDNGFDYRGALLAWVLSLLAVFPVPVSLAWLGITTGIFIQGIGSNRLRFL 700
            +PG D   +    ++ +L L+A+VF  ++H+  A+  L G     G  G G+   +V          N +  Y  S  V++L+ +LF+ F     + +DY   LLAW++SL+A F   +S+AWLGITTG+F+QG+G+   R L
Sbjct:  139 DPGGDLSPAEAALSIILLILVALVF--AYHYFLAWKFLPG-----GWLGWGMVSGQVAEPPPPSRAENRYLQYMASITVIMLYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFRVL 274
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BLAST of mRNA_F-serratus_M_contig1211.1664.1 vs. uniprot
Match: A0A6H5JIF9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIF9_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.630e-13
Identity = 48/131 (36.64%), Postives = 70/131 (53.44%), Query Frame = 2 
Query:  332 VRSTLFILGLIAVVFFISWHFARAYMTLVGTLFISGGKGEGIKKPEV--------NLHAMYTGSRAVLVLWCILFTCFLIIEDNGFDYRGALLAWVLSLLAVFPVPVSLAWLGITTGIFIQGIGSNRLRFL 700
            V STL +   IAV     +HF  A+ TL G + ISGG    +  PE         N  A Y  +  ++  +  L   F+    + ++Y   LLAWV+SL+A+F  P S+ WLG+TTG F+QG+G+   +FL
Sbjct:  122 VVSTLLV---IAVGLAFVYHFFVAWTTLPGAVMISGG----VSTPEDATAPVRSGNRFARYMATAVLVAAFVALNAAFVHRRGDNWNYHYTLLAWVMSLIAIFDDPFSVVWLGVTTGAFLQGVGAYSFQFL 245
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BLAST of mRNA_F-serratus_M_contig1211.1664.1 vs. uniprot
Match: A0A7S3XT19_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT19_HETAK)

HSP 1 Score: 59.7 bits (143), Expect = 5.080e-7
Identity = 29/94 (30.85%), Postives = 48/94 (51.06%), Query Frame = 1 
Query:    7 YSGQNERALIWAGLYFGVWIIQRLWCNLGLPENCEVVTAPLDVLTDMAVLFSFSLAQAWWCDLLEKNR-WEDTIKKPWVFGVV-----PVTAII 270
            Y G+  R  +W  +   +WII R+ C  G P +C   ++P   + D+ +L  +   QAW+ ++LE+ R W     + W F VV     PV ++I
Sbjct:   44 YKGEYTRMGVWLAVLTCLWIITRVTCACGAPNDCVSESSPSTTMNDIQILLLYGFTQAWFVEILERRRFWHVFSLQRWYFWVVLAGTPPVFSVI 137
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1211.1664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LDF3_ECTSI2.260e-5561.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G1P1_ECTSI2.870e-1937.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LDF2_ECTSI5.550e-1641.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G1N8_ECTSI5.520e-1532.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMR1_9PHAE8.260e-1534.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIF9_9PHAE3.630e-1336.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3XT19_HETAK5.080e-730.85Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1211contigF-serratus_M_contig1211:59911..62208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size706
Cds size423
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929132.1170986-UTR-F-serratus_M_contig1211:59910..599481622929132.1170986-UTR-F-serratus_M_contig1211:59910..59948Fucus serratus maleUTRF-serratus_M_contig1211 59911..59948 +
1690962717.623424-UTR-F-serratus_M_contig1211:59910..599481690962717.623424-UTR-F-serratus_M_contig1211:59910..59948Fucus serratus maleUTRF-serratus_M_contig1211 59911..59948 +
1622929132.131291-UTR-F-serratus_M_contig1211:60226..602711622929132.131291-UTR-F-serratus_M_contig1211:60226..60271Fucus serratus maleUTRF-serratus_M_contig1211 60227..60271 +
1690962717.6325765-UTR-F-serratus_M_contig1211:60226..602711690962717.6325765-UTR-F-serratus_M_contig1211:60226..60271Fucus serratus maleUTRF-serratus_M_contig1211 60227..60271 +
1622929132.1459727-UTR-F-serratus_M_contig1211:60585..606461622929132.1459727-UTR-F-serratus_M_contig1211:60585..60646Fucus serratus maleUTRF-serratus_M_contig1211 60586..60646 +
1690962717.641682-UTR-F-serratus_M_contig1211:60585..606461690962717.641682-UTR-F-serratus_M_contig1211:60585..60646Fucus serratus maleUTRF-serratus_M_contig1211 60586..60646 +
1622929132.5603-UTR-F-serratus_M_contig1211:62069..622081622929132.5603-UTR-F-serratus_M_contig1211:62069..62208Fucus serratus maleUTRF-serratus_M_contig1211 62070..62208 +
1690962717.6869912-UTR-F-serratus_M_contig1211:62069..622081690962717.6869912-UTR-F-serratus_M_contig1211:62069..62208Fucus serratus maleUTRF-serratus_M_contig1211 62070..62208 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929132.2432144-CDS-F-serratus_M_contig1211:60646..606791622929132.2432144-CDS-F-serratus_M_contig1211:60646..60679Fucus serratus maleCDSF-serratus_M_contig1211 60647..60679 +
1690962717.6513367-CDS-F-serratus_M_contig1211:60646..606791690962717.6513367-CDS-F-serratus_M_contig1211:60646..60679Fucus serratus maleCDSF-serratus_M_contig1211 60647..60679 +
1622929132.2593095-CDS-F-serratus_M_contig1211:61297..613801622929132.2593095-CDS-F-serratus_M_contig1211:61297..61380Fucus serratus maleCDSF-serratus_M_contig1211 61298..61380 +
1690962717.6615162-CDS-F-serratus_M_contig1211:61297..613801690962717.6615162-CDS-F-serratus_M_contig1211:61297..61380Fucus serratus maleCDSF-serratus_M_contig1211 61298..61380 +
1622929132.4069104-CDS-F-serratus_M_contig1211:61762..620691622929132.4069104-CDS-F-serratus_M_contig1211:61762..62069Fucus serratus maleCDSF-serratus_M_contig1211 61763..62069 +
1690962717.678479-CDS-F-serratus_M_contig1211:61762..620691690962717.678479-CDS-F-serratus_M_contig1211:61762..62069Fucus serratus maleCDSF-serratus_M_contig1211 61763..62069 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1211.1664.1prot_F-serratus_M_contig1211.1664.1Fucus serratus malepolypeptideF-serratus_M_contig1211 60647..62069 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1211.1664.1

>prot_F-serratus_M_contig1211.1664.1 ID=prot_F-serratus_M_contig1211.1664.1|Name=mRNA_F-serratus_M_contig1211.1664.1|organism=Fucus serratus male|type=polypeptide|length=141bp
MAVLFSFSLAQAWWCDLLEKNRWEDTIKKPWVFGVVPVTAIIISALGRIR
GLESGRRLRVFRCPVDAVHPRPDRRRVLHLVALRACLHDPRGDPLHLRRQ
GRGHQEARGQLARHVHGQPRGAGPLVYPVHVLPHHRGQRV*
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mRNA from alignment at F-serratus_M_contig1211:59911..62208+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1211.1664.1 ID=mRNA_F-serratus_M_contig1211.1664.1|Name=mRNA_F-serratus_M_contig1211.1664.1|organism=Fucus serratus male|type=mRNA|length=2298bp|location=Sequence derived from alignment at F-serratus_M_contig1211:59911..62208+ (Fucus serratus male)
GGGGACTACTCAGGACAAAATGAGCGCGCGCTGATTTGGTGAGTCAACAT
CAAAGAGGAGACGGATCCATATCACAAGGCAAAGAAAGCCATACGCCTTG
TACAAGTATTGTACAACAAGTAGGTCTCATCTGATGTGTAGCCTTTTTGG
CGCCCACAGACATGACATAAACGTAAACCTCAATCGGTTGACGTTGAAAG
TTAAAGAGCGGCACCGGCCTGTGCTCTGCGGTAGAAGCTGATGCTTCCGT
TGTGCTGTGCTCATTGCTGCCGCCCGCACCTTCTTCGTCTCATCTGTCTT
GCCCGTCGAAATTCAGGGCTGGGCTCTACTTCGGTGTGTGGATCATCCAG
AGGCTGTGGTGGTGAGTTGGGACCCTGCGGCTAAGCCAAGACGTTTTCTA
GTAGGCTTGCTTTGCTTAGACTGTTGTGTTCGTAGATGCGCTGGTCTCTC
AGAAATCACGCGCTGTGCTCCGTATAGCACCAAGTTCCTTTCACCTGTAC
GTAGAGCAAGAGATAAATTGTCAACGGCCATCTACACTACTGTACTGTAG
TGCCATACTGGTACACAGTAGTAGTGCCATACTGGTACACATTAAGTAGC
ATTCAACAATATTGCCATAGCATCGACTTACACCTTGTCCTTACTTGGCT
CGCTCCCTATCTCCCGCTACCTCAGTAACCTTGGCCTGCCGGAGAACTGC
GAAGTGGTGACGGCGCCGCTGGACGTGCTGACCGATATGGCGGTGCTCTT
CTCTTTTTCGTTGGCACAGGTGTGTGTGTGTTGTGTTTGTGTGTGTGTGT
CTCTTCATTCTTAAGTTCAAAACTCTTTCGCGCCAAATGTTCTCTGAATA
CATGTACCAAATATACTCTGAATACAGCAGGTACCAAATATACTCTGAAT
ACAGCAGGTACCAAATATACTCTGAATACAGCAGGTGAATACAGCAGGTA
CCAAATATACTCTGAATACAGCAGGTACCAAATATACTGATAATACTAAA
TCAGTACCACGAGATGTTCGGGACGATATCCCGTGAGTGCCAAGCCAAGC
TGTGTCTATTTCGTAAACGATAAATTATTGCGGGCCCTGTGTCGCTAGAT
TGTTCTCGCATAAGCCGATATGAATACGTGGTTGCCAATCCGGTACGCCA
TCATTGAAGTGTAGTGTATATCTCGTACTGCTGTAGTCCATCATAAGAAA
AATTCCATCTAAACCTGCGGAGAATTTGTCAGATCGTTCAGGTGGTATCA
TATGAAGTCTTGCGATGGAACGAACCACTAATAACACTTGTCAAAACACT
TGAGGAACAACCATCAGGGCTACGGAATATATTCTCCAGTCTCCCTCATT
CGCTTTTGTGTATTTTCCATTTTATTTGACAAAACAGGCTTGGTGGTGCG
ACCTCTTGGAGAAGAACCGATGGGAGGACACCATTAAAAAACCCTGGGTT
TTTGGAGTCGTTCCCGTAACGTGAGTCTTGAGATCAATGTAGAGATTCGA
GTTTGACAAGGGGAAATCTGAAGGCACTAGACAGTCTTGGGCATCCCCCA
GGAAAAATGTTTGTTGAATCGCTCACGAGTTTTGGATCGCCCGCCACCAA
AGCGGTTTTTTATAATAAATTTCGATCAGACATAACATGTAAAAGAAACC
ACCCACTTTTTTTATTACCATCCTGCCTGTGGTCACAAAGGATCTTGCCA
TCTCTCCCCGGTTCACGCCTTACAATTTTTATCGCGATGCAAGTTCAGAA
CTATTGCAACTCGTCAGCCAATGGTTGACTATGCTCAAACAACCGCCATC
CCCTTTCGCCGCAACCTCCGCGCGGTCACAAAAAACATTCACAAATACAC
AGGGCGATCATCATTTCCGCCCTGGGTCGGATCAGAGGCCTCGAATCCGG
GAGAAGACTTCGAGTTTTCCGGTGTCCGGTCGACGCTGTTCATCCTCGGC
CTGATCGCCGTCGTGTTCTTCATCTCGTGGCACTTCGCGCGTGCCTACAT
GACCCTCGTGGGGACCCTCTTCATCTCCGGAGGCAAGGGCGAGGGCATCA
AGAAGCCAGAGGTCAACTTGCACGCCATGTACACGGGCAGCCGCGCGGTG
CTGGTCCTCTGGTGTATCCTGTTCACGTGCTTCCTCATCATCGAGGACAA
CGGGTTTGACTACCGAGGCGCCTTGCTCGCGTGGGTACTGTCGCTGCTCG
CCGTGTTCCCCGTCCCAGTGAGCTTGGCGTGGCTCGGTATCACGACAGGC
ATTTTCATTCAGGGGATCGGGTCCAACCGCCTTCGCTTCTTGGGGTGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1211:59911..62208+

>mRNA_F-serratus_M_contig1211.1664.1 ID=mRNA_F-serratus_M_contig1211.1664.1|Name=mRNA_F-serratus_M_contig1211.1664.1|organism=Fucus serratus male|type=CDS|length=846bp|location=Sequence derived from alignment at F-serratus_M_contig1211:59911..62208+ (Fucus serratus male)
ATGGCGGTGCTCTTCTCTTTTTCGTTGGCACAGATGGCGGTGCTCTTCTC
TTTTTCGTTGGCACAGGCTTGGTGGTGCGACCTCTTGGAGAAGAACCGAT
GGGAGGACACCATTAAAAAACCCTGGGTTTTTGGAGTCGTTCCCGTAACG
CTTGGTGGTGCGACCTCTTGGAGAAGAACCGATGGGAGGACACCATTAAA
AAACCCTGGGTTTTTGGAGTCGTTCCCGTAACGGCGATCATCATTTCCGC
CCTGGGTCGGATCAGAGGCCTCGAATCCGGGAGAAGACTTCGAGTTTTCC
GGTGTCCGGTCGACGCTGTTCATCCTCGGCCTGATCGCCGTCGTGTTCTT
CATCTCGTGGCACTTCGCGCGTGCCTACATGACCCTCGTGGGGACCCTCT
TCATCTCCGGAGGCAAGGGCGAGGGCATCAAGAAGCCAGAGGTCAACTTG
CACGCCATGTACACGGGCAGCCGCGCGGTGCTGGTCCTCTGGTGTATCCT
GTTCACGTGCTTCCTCATCATCGAGGACAACGGGTTTGAGGCGATCATCA
TTTCCGCCCTGGGTCGGATCAGAGGCCTCGAATCCGGGAGAAGACTTCGA
GTTTTCCGGTGTCCGGTCGACGCTGTTCATCCTCGGCCTGATCGCCGTCG
TGTTCTTCATCTCGTGGCACTTCGCGCGTGCCTACATGACCCTCGTGGGG
ACCCTCTTCATCTCCGGAGGCAAGGGCGAGGGCATCAAGAAGCCAGAGGT
CAACTTGCACGCCATGTACACGGGCAGCCGCGCGGTGCTGGTCCTCTGGT
GTATCCTGTTCACGTGCTTCCTCATCATCGAGGACAACGGGTTTGA
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