mRNA_F-serratus_M_contig1209.1637.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1209.1637.1
Unique NamemRNA_F-serratus_M_contig1209.1637.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1209.1637.1 vs. uniprot
Match: A0A6H5KL38_9PHAE (COP9 signalosome complex subunit 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL38_9PHAE)

HSP 1 Score: 610 bits (1573), Expect = 6.530e-212
Identity = 302/438 (68.95%), Postives = 355/438 (81.05%), Query Frame = 2
Query:  239 NDAELTTMNSLLAKQGDALQEIGRSFSQTMGSDGAGSAAAAVSPLLVHAMDHTKRASLGSLHLLAAQAEVLNPCDRTPFIDVTLAFLEHCQWRHVVIAPKYVGDVCQKFAQICILEGRAGEAILPLRTAAYRMGSATSSLTPVHPEFLQCCIMAKCYNLGARFMDEQPVFGVEPKVTALTPAHFLRHFYYGGLIYIGTKRWRDALDSFVMLLAAPATVLSSLVIEGYKKMVLVSLILSGNLPEIPKYAPNVITRHLKSHAPAYETLGKCCQAEDIKGLKAAAVAGNEIFKQDGNMGLVKQVLSDLTKRKIMQLTHTYITLSLRDISDKVGLEHPDDTERHILQMIEAGEICAKITSPAATVHFQEDCQLFSSSKMTPRLEADLQSTAELTERVRKLEAKLLTNPVFVQKMMGDHSVPGAGLGGAVGYS-TWDDIGMGD 1549
            ++A+L T++  L KQGDALQE+ ++FSQT   DG    AAA SPL+  AM+HTK ASLGSLHLLAAQAEVL P +   FIDVTLAFLEHC W  V IAPK++G VC+KF Q+CI EGRA EA+LPLR+AA +M    SSLTP+HPEFLQCCI AKCY+LGARFMD++P+FGVEP  T LTP HFLRHFYYGG++Y+G K+W+DALDSF+MLL  PA VLSSLV+EGYKKM+LVSLI+SG +P +PKYA N +TRHLKSH   YE L  C Q  D+KGL AA VAG+E F QDGNMGLVKQ ++ LTKRKI +LTHTYITL L DISDKVGL H DD + +IL M+EAGEICA+I  PA TVHF+ED    SS+ MT RLEADL+STAELTERVRKLEA+L+ NPVF+QKM+GDHS+PGAGLG A GYS +WDDIGMGD
Sbjct:   19 SNAQLKTIHGALTKQGDALQEVAKTFSQTTDQDGG--VAAANSPLIAAAMEHTKLASLGSLHLLAAQAEVLTPQEVPAFIDVTLAFLEHCNWHQVTIAPKHLGSVCKKFGQVCISEGRASEALLPLRSAAIKMDGDRSSLTPLHPEFLQCCIAAKCYSLGARFMDDRPIFGVEPVATGLTPVHFLRHFYYGGIVYVGAKQWKDALDSFLMLLTIPANVLSSLVVEGYKKMMLVSLIISGKVPPLPKYASNSVTRHLKSHTSDYEALVSCFQVGDVKGLNAAVVAGSEKFSQDGNMGLVKQAVTALTKRKITELTHTYITLPLSDISDKVGLAHADDAQGYILNMVEAGEICAQIAYPAGTVHFREDTNTLSSTTMTARLEADLRSTAELTERVRKLEARLIVNPVFIQKMVGDHSLPGAGLGAAAGYSASWDDIGMGD 454          
BLAST of mRNA_F-serratus_M_contig1209.1637.1 vs. uniprot
Match: A0A1Y1IEP4_KLENI (COP9 signalosome subunit CSN3 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IEP4_KLENI)

HSP 1 Score: 247 bits (630), Expect = 4.710e-71
Identity = 132/356 (37.08%), Postives = 207/356 (58.15%), Query Frame = 2
Query:  401 RASLGSLHLLAAQAEVLNPCDRTPFIDVTLAFLEHCQWRHVVIAPKYVGDVCQKFAQICILEGRAGEAILPLRTAAYRMGSATSSLTPVHPEFLQCCIMAKCYNLGARFMDEQPVFGVEPKVTALTPAHFLRHFYYGGLIYIGTKRWRDALDSFVMLLAAPATVLSSLVIEGYKKMVLVSLILSGNLPEIPKYAPNVITRHLKSHAPAYETLGKCCQAEDIKGLKAAAVAGNEIFKQDGNMGLVKQVLSDLTKRKIMQLTHTYITLSLRDISDKVGLEHPDDTERHILQMIEAGEICAKITSPAATVHFQEDCQLFSSSKMTPRLEADLQSTAELTERVRKLEAKLLTNPVFVQKM 1468
            R SL  L LL AQ  V  P     FI+   AFL+ C    + IA +    VC K     ++  +    +LPLRTA  ++   +  LTP H +FL   +++K YN G   + E+ +F V+ K T + P  FL + YYGG++YIG KR++ AL+     ++APA VL+++ +E YKK V+V L++ G LP   KY P ++ + LKS++  Y  LG       +  LK        ++K D N+GLVKQ++  L KR I +LT TY+TLSL+DI++ V LE P + E H+L+MIE GEI A+I      V F+ED + ++S +M  +L+A++Q   +L ++V  ++ ++ T+  ++ K+
Sbjct:   54 RYSLAWLFLLDAQQGVTQPDKADAFINRCTAFLKACHQDQIRIAVEKFNSVCFKLKDCVLVLNQPARGVLPLRTAIKKLQPTSEHLTPQHADFLLLVVLSKIYNAGLPVLAEE-IFEVDAKKTGIAPRDFLLYCYYGGMVYIGMKRFKKALELLGHAISAPAQVLNAITLEAYKKFVVVHLLVDGQLPTFQKYTPTIVQKLLKSNSQPYIDLGNAYATRSVGDLKKCIQTNENVYKTDTNLGLVKQLIPSLYKRNIQRLTQTYLTLSLKDIAEAVELEGPKEAELHVLRMIEEGEIFAEINQKDGMVSFREDPEEYNSVEMVNQLDAEMQGMIKLAKKVAAIDEQVSTDKAYLGKI 408          
BLAST of mRNA_F-serratus_M_contig1209.1637.1 vs. uniprot
Match: A0A388JJP1_CHABU (PCI domain-containing protein (Fragment) n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JJP1_CHABU)

HSP 1 Score: 247 bits (631), Expect = 5.800e-71
Identity = 135/360 (37.50%), Postives = 209/360 (58.06%), Query Frame = 2
Query:  401 RASLGSLHLL---AAQAEVLNPCDRTPFIDVTLAFLEHCQWRHVVIAPKYVGDVCQKFAQICILEGRAG-EAILPLRTAAYRMGSATSSLTPVHPEFLQCCIMAKCYNLGARFMDEQPVFGVEPKVTALTPAHFLRHFYYGGLIYIGTKRWRDALDSFVMLLAAPATVLSSLVIEGYKKMVLVSLILSGNLPEIPKYAPNVITRHLKSHAPAYETLGKCCQAEDIKGLKAAAVAGNEIFKQDGNMGLVKQVLSDLTKRKIMQLTHTYITLSLRDISDKVGLEHPDDTERHILQMIEAGEICAKITSPAATVHFQEDCQLFSSSKMTPRLEADLQSTAELTERVRKLEAKLLTNPVFVQKM 1468
            R SL  LH+L   +++  V +P D    I    +F+  C    + +AP+    VC K     +  G    +AILPL+TA  ++       TP H +F   C+++KCYN     +D   +F V+PK TALTP  FL + YYGG +YIG KR+  AL  F   + AP+TVL+++ I  YKK VLVSLI++G L + PKY P+++ R LK+ + AY  +G      +++ ++    + +E F  D N+GL KQV++ L KR I +LT TY+TLSL+DI+D V LE P D E H+L+MIE GEI A I      V F ED + +++ +M  RL+ ++ S  +L  ++  ++ ++  +  ++ +M
Sbjct:   70 RHSLACLHILDVLSSRVPVGSP-DSGEVICRISSFINDCSADQIRLAPELFASVCHKLKDFVMTAGNLPIKAILPLQTAIRKIQPTPEHFTPQHADFTLVCLLSKCYNAALPILDTD-IFEVDPKKTALTPRDFLLYCYYGGTVYIGLKRFNKALQLFHHAITAPSTVLNAITIAAYKKFVLVSLIVNGQLAQFPKYTPSIVQRSLKTQSQAYVNMGNAYATRNVEEVQRCITSHHEGFNNDRNLGLAKQVVASLYKRNIQRLTQTYLTLSLQDIADTVKLEGPRDAEMHVLRMIEDGEIFATINQKDGMVRFHEDSEQYNTMEMAERLDGEIHSMMKLAGKLTAVDEQISCDRAYLGRM 427          
BLAST of mRNA_F-serratus_M_contig1209.1637.1 vs. uniprot
Match: A0A7S2ML15_9STRA (COP9 signalosome complex subunit 3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ML15_9STRA)

HSP 1 Score: 240 bits (613), Expect = 1.570e-68
Identity = 143/387 (36.95%), Postives = 215/387 (55.56%), Query Frame = 2
Query:  386 MDHTKRASLGSLHLLAAQAEVLNPCDRTPFIDVTLAFLEHCQWRHVVIAPKYVGDVCQKFAQI-------CILEGRAGEAILPLRTAAYRM---GSATSSLTPVHPEFLQCCIMAKCYNLGARFMDEQPVFGVEPKVTALTPAHFLRHFYYGGLIYIGTKRWRDALDSFVMLLAAPATVLSSLVIEGYKKMVLVSLILSGNLPEIPKYAPNVITRHLKSHAPAYETLGKCCQAEDIKGLKAAAVAGNEIFKQDGNMGLVKQVLSDLTKRKIMQLTHTYITLSLRDISDKVGLEHPDDTERHILQMIEAGEICAKITSPAATVHF---QEDCQLFSSSKMTPRLEADLQSTAELTERVRKLEAKLLTNPVFVQKMMGDHSVPGAGLGG 1507
            +D T+  SLG LH+LAAQ+ VL   D  PF + T  F+  C    +    K   DVC+KF ++       C++      AI PL+ A  ++        +LTP+H + LQ C++  CY++G RFMDE PV  V PK   L    +LR++YY G++ +G K+   A++SF++ +  PAT LS++ +E YKK++LV+LI +G L  +P Y  +V++RHLK+    Y  +       D+ GL++       I + D N+GL +QV S LT R+I +LT TY+TLSL  ++ KVGLE  DD ER ++ MI  G+ICA I      V F   +EDC   SS  MT RLE  +     ++ RV  ++  +  +  ++ K   +    GA  GG
Sbjct:   48 LDQTRH-SLGVLHMLAAQSTVLAEADMQPFFNQTRIFIALCDPVQIQKDTKLFVDVCRKFTEVATKLRGPCVMY-----AIKPLQRAVQKLLADNERPHTLTPIHADLLQLCLLGGCYHIGERFMDEFPVLYVSPKTMRLVALDYLRYWYYTGMVCVGLKKMPRAIESFLLAITMPATALSTVAVESYKKLLLVNLIENGELVTLPSYTCSVVSRHLKALTKPYHDIAAKFAENDLDGLRSKIEKSFTILEGDKNVGLARQVASALTYRQIQRLTFTYMTLSLEAMATKVGLEGADDAERILVAMISEGKICACIDQTTRMVRFDDREEDC---SSVAMTQRLEEQMGKIVAMSRRVDDVDVAISCSQAYLIKATANR---GASSGG 422          
BLAST of mRNA_F-serratus_M_contig1209.1637.1 vs. uniprot
Match: A0A2R6XR65_MARPO (PCI domain-containing protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XR65_MARPO)

HSP 1 Score: 239 bits (609), Expect = 4.800e-68
Identity = 136/366 (37.16%), Postives = 209/366 (57.10%), Query Frame = 2
Query:  383 AMDHTKRASLGSLHLLAAQAE-VLNPCDRTPFIDVTLAFLEHCQWRHVVIAPKYVGDVCQKFAQICILEGRAGEAILPLRTAAYRMGSATSSLTPVHPEFLQCCIMAKCYNLGARFMDEQPVFGVEPKVTALTPAHFLRHFYYGGLIYIGTKRWRDALDSFVMLLAAPATVLSSLVIEGYKKMVLVSLILSGNLPEIPKYAPNVITRHLKSHAPAYETLGKCCQAEDIKGLKAAAVAGNEIFKQDGNMGLVKQVLSDLTKRKIMQLTHTYITLSLRDISDKVGLEHPDDTERHILQMIEAGEICAKITSPAATVHFQEDCQLFSSSKMTPRLEADLQSTAELTERVRKLEAKLLTNPVFVQKMMGD 1477
            A+D  K  SLG L+LL A +   L+      F+     FL  C    + +A      +C++     +       AILPL  A  +   ++  LTP+H ++L  C+++KCY  G   +++  +F ++ K T L P  FL H YYGG++YIG KR+  AL+ F   + APATVL+++ I  YKK VLV LI +G +P  PKY P+V+ R+LKS A  Y  L     + +I  +K    A  ++FK D N+GL  QV++ L KR I +LT TY+TLSL+DI+D V L+ P + E HILQMI+ GEI A I      V FQED + +++ KM   L++++Q    L +++  ++ ++L +  ++ K+  D
Sbjct:   49 ALDPAKH-SLGYLYLLEAHSSGTLSKEQAGSFVVAASNFLTVCSADQIRLAIDKFNILCRRLKDQAMQMMEPSCAILPLYAAIRKSQPSSEYLTPLHADYLLLCLLSKCYKAGLNILEDD-IFEIDQKRTGLMPRDFLLHCYYGGMLYIGLKRFGKALEFFQHAITAPATVLNAITIAAYKKFVLVCLIHNGQVPPFPKYTPSVVQRNLKSCAQDYFDLANLYNSRNIMDVKRCVNAHEDVFKNDTNLGLANQVIASLYKRNIQRLTQTYLTLSLQDIADTVQLDGPKEAELHILQMIQDGEIFATINQKDGMVSFQEDPEQYNTRKMANMLDSEIQHIIRLAKKLSSVDEQVLCDQNYLSKIGKD 412          
BLAST of mRNA_F-serratus_M_contig1209.1637.1 vs. uniprot
Match: A0A6B2L4X0_9EUKA (COP9 signalosome complex subunit 3 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L4X0_9EUKA)

HSP 1 Score: 234 bits (598), Expect = 1.030e-66
Identity = 128/357 (35.85%), Postives = 209/357 (58.54%), Query Frame = 2
Query:  401 RASLGSLHLLAAQAEVLNPCDRTPFIDVTLAFLEHCQWRHVVIAPKYVGDVCQKFAQICILEGRAGEAILPLRTAAYRMGSATSSLTPVHPEFLQCCIMAKCYNLGARFMDEQPVFGVEPKVTALTPAHFLRHFYYGGLIYIGTKRWRDALDSFVMLLAAPATVLSSLVIEGYKKMVLVSLILSGNLPEIPKYAPNVITRHLKSHAPAYETLGKCCQAEDIKGLKAAAVAGNEIFKQDGNMGLVKQVLSDLTKRKIMQLTHTYITLSLRDISDKVGLEHPDDTERHILQMIEAGEICAKITSPAATVHFQEDCQLFSSSKMTPRLEADLQSTAELTERVRKLEAKLLTNPVFVQKMM 1471
            R SLG LHLL A+A V    D   FI   + F+++C  R + + PK   +VC KF +IC    +A  AI PL+ A  ++GS+   +TP H  F+Q CI +K Y+     +  Q +F ++P++T L        FYY G++ I  K +  A++ F ++++AP  V+S ++IE YKK +LVSL   G +P++PKY    I    K  APAYE      Q + ++ L   A    E++ +DGNMGLVKQ +  L ++ I +LT TY+TLSL++I+D+V LE+  +TE+ + +MI+ GE+ A+I      V F E+ + FS+  ++  L+  +  T +LT  V +++ ++  +  ++QK++
Sbjct:   30 RHSLGILHLLNAKA-VTGVFDNETFIHQVIHFIKNCSIRQIRVDPKKFRNVCLKFTEICRDTHQAIRAIKPLKLAINKIGSS-EQMTPQHFMFVQSCIKSKHYSAALPIIH-QKIFKIDPQITGLESIDVRLFFYYAGIVEIALKNFAKAIECFELVISAPGIVVSFVMIEAYKKFILVSLCHKGEIPDLPKYTLGSIHSTFKQVAPAYEEFKTSFQTQSLEDLHKVAQNNAEVYMKDGNMGLVKQAIQSLIRQNIQRLTKTYLTLSLQNITDQVSLENTKETEKRVFKMIQNGEVFARINQKDGMVEFLENSENFSNYNVSNYLDKQIHQTIDLTSFVNRIDQEIALDTNYIQKLL 383          
BLAST of mRNA_F-serratus_M_contig1209.1637.1 vs. uniprot
Match: A0A6V7PNK9_ANACO (PCI domain-containing protein n=5 Tax=Ananas comosus TaxID=4615 RepID=A0A6V7PNK9_ANACO)

HSP 1 Score: 235 bits (599), Expect = 1.050e-66
Identity = 141/424 (33.25%), Postives = 230/424 (54.25%), Query Frame = 2
Query:  200 MEAALEAMRLPTNNDAELTTMNSLLAKQGDALQEIGRSFSQTMGSDGAGSAAAAVSPLLVHAMDHTKRASLGSLHLLAAQAEVLNPCDRTP-FIDVTLAFLEHCQWRHVVIAPKYVGDVCQKFAQICILEGRAGEAILPLRTAAYRMGSATSSLTPVHPEFLQCCIMAKCYNLGARFMDEQPVFGVEPKVTALTPAHFLRHFYYGGLIYIGTKRWRDALDSFVMLLAAPATVLSSLVIEGYKKMVLVSLILSGNLPEIPKYAPNVITRHLKSHAPAYETLGKCCQAEDIKGLKAAAVAGNEIFKQDGNMGLVKQVLSDLTKRKIMQLTHTYITLSLRDISDKVGLEHPDDTERHILQMIEAGEICAKITSPAATVHFQEDCQLFSSSKMTPRLEADLQSTAELTERVRKLEAKLLTNPVFVQKM 1468
            MEA +  +   +    EL  ++SLL +  DAL+  G   +                PLL+H +D +K  SLG L++L A        D+   F+   + F+  C    + +AP     VC++     +      + + PLRTA  ++ +++  LT +H +FL  CI+AK Y  G   +++  +   +P+   L       ++YYGG+IYIG KR+R AL+    ++ AP T L+++ +E YKK +LVSLIL+G +P  PKY  +   R+LK+H   Y  L  C  +     L+A   +  E F+ D N+GLVKQVLS L KR I +LT TY+TLSL+DI++ V L+ P + E H+L+MI+ GEI A I      V F ED + + + +M   +++ +Q    L++++R ++ ++  +P +V K+
Sbjct:    4 MEALVAHIEALSAIPEELPHLHSLLKQSEDALRSQGPGLA----------------PLLLHQLDPSKH-SLGYLYILEAYLSGPISSDQAGGFLLSVVDFINSCSGDQIRLAPDKFIQVCKRLKDQVMQLQVPLQGVAPLRTAIRKLQTSSEQLTTIHSDFLLLCILAKSYKTGLSILEDDILEVDQPRDLFL-------YYYYGGIIYIGLKRFRTALECLHNVVTAPMTTLNAIAVEAYKKYILVSLILNGQVPSFPKYTSSTAQRNLKNHTQPYIDLSACYASGKYSDLEAFIQSNVEKFQSDNNLGLVKQVLSSLYKRNIQRLTQTYLTLSLQDIANAVQLKTPKEAEMHVLRMIQDGEIFATINQKDGMVSFHEDPEQYKTCEMAEHIDSTIQRLMALSKKLRSIDEQISCDPAYVSKI 403          
BLAST of mRNA_F-serratus_M_contig1209.1637.1 vs. uniprot
Match: A0A0D6QYT4_ARACU (PCI domain-containing protein n=1 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6QYT4_ARACU)

HSP 1 Score: 233 bits (593), Expect = 8.170e-66
Identity = 145/429 (33.80%), Postives = 234/429 (54.55%), Query Frame = 2
Query:  200 MEAALEAMRLPTNNDAELTTMNSLLAKQGDALQEIGRSFSQTMGSDGAGSAAAAVSPLLVHAMDHTKRASLGSLHLLAAQAEVLNPCDRTP-FIDVTLAFLEHCQWRHVVIAPKYVGDVCQKFAQICILEGRAGEAILPLRTAAYRMGSATSSLTPVHPEFLQCCIMAKCYNLGARFMDEQPVFGVEPKVTALTPAHFLRHFYYGGLIYIGTKRWRDALDSFVMLLAAPATVLSSLVIEGYKKMVLVSLILSGNLPEIPKYAPNVITRHLKSHAPAYETLGKCCQAEDIKGLKAAAVAGNEIFKQDGNMGLVKQVLSDLTKRKIMQLTHTYITLSLRDISDKVGLEHPDDTERHILQMIEAGEICAKITSPAATVHFQEDCQLFSSSKMTPRLEADLQSTAELTERVRKLEAKLLTNPVFVQKMMGDHS 1483
            ++A +  ++  ++++A+LT +  LL +    L+E                  A +S LL   +D  K  SLG L++L A      P ++   F+ +   F+  C    + IAP+   ++C+KF +         +AI PL+TA  ++  ++  LT +HP+FL  C++AKCY  G   ++E  +F ++       P  FL + YYGG++YIG KR+  AL+ F   + AP T L+++ +E YKK VLVSLI +G +P  PKY P V+ R+LKS    Y  L     +  I  L +      E FK D N+GLVKQVLS L KR I +LT TY+TLSL+DI++ V LE     E H+LQMI+ GEI A I      V FQED + + + KMT  +++ ++    L+ +++ ++ ++  +  ++ ++  + S
Sbjct:    4 LDALIAQVQGFSDSNADLTHLQGLLKEYESVLRE---------------QPCARLSSLLSQ-LDPAKH-SLGYLYVLEAHTSCSIPREQVEGFLLIAANFINSCSAEQICIAPEKFTNLCKKFKEQVTDLQVPKQAIFPLQTAVRKLQPSSEHLTSLHPDFLLVCLLAKCYKAGLSILEED-IFEIDQ------PRDFLLYCYYGGMVYIGLKRFSKALEFFQHAITAPMTSLTAITVEAYKKYVLVSLIHTGQVPAFPKYTPAVVQRNLKSCTQPYIELANNYTSGKISVLDSCLNTHMEKFKNDSNLGLVKQVLSSLYKRNIQRLTQTYLTLSLQDIANTVQLETAKQAELHVLQMIQDGEIFATINQKDGMVSFQEDPEQYKTCKMTEHIDSAIRRIMALSRKLKSIDEQVSCDHAYLSRVGRERS 408          
BLAST of mRNA_F-serratus_M_contig1209.1637.1 vs. uniprot
Match: A9SV28_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SV28_PHYPA)

HSP 1 Score: 231 bits (590), Expect = 2.530e-65
Identity = 129/363 (35.54%), Postives = 204/363 (56.20%), Query Frame = 2
Query:  392 HTKRASLGSLHLLAAQAE-VLNPCDRTPFIDVTLAFLEHCQWRHVVIAPKYVGDVCQKFAQICILEGRAGEAILPLRTAAYRMGSATSSLTPVHPEFLQCCIMAKCYNLGARFMDEQPVFGVEPKVTALTPAHFLRHFYYGGLIYIGTKRWRDALDSFVMLLAAPATVLSSLVIEGYKKMVLVSLILSGNLPEIPKYAPNVITRHLKSHAPAYETLGKCCQAEDIKGLKAAAVAGNEIFKQDGNMGLVKQVLSDLTKRKIMQLTHTYITLSLRDISDKVGLEHPDDTERHILQMIEAGEICAKITSPAATVHFQEDCQLFSSSKMTPRLEADLQSTAELTERVRKLEAKLLTNPVFVQKMMGD 1477
            H  + SLG L+LL AQ+   L       F+ +  +FL  C    + +AP     VC++     +       AILPL+ A  ++  ++  LT +H ++LQ C+++KCY      +++  +F ++ K T+L P  FL + YYGG+IYIG K++  AL+ F   + AP T L+++ I  + K VLVSLI +G +P  PKY P V+ R+LKS    Y  L     + +I  +K       E+FK D N+GL KQV++ L KR I +LT TY+TLSL+DI++ V L+   D E HILQMI+ G+I A I      V FQED + +++  MT RL  ++     L +++  ++ ++  +  ++ K+  D
Sbjct:   50 HPTKHSLGYLYLLEAQSSGTLTREQSDSFLALASSFLTVCAPEQIRLAPDKFNSVCRRLRDQAMHLHEPMRAILPLQCAIRKLQPSSEYLTAIHADYLQMCLLSKCYKASLSILEDD-IFEIDQKKTSLVPRDFLLYCYYGGMIYIGLKKFSKALEFFQHAITAPTTALNAITIAAFGKYVLVSLIQNGQVPPFPKYTPAVVLRNLKSCVQDYLDLANLYASRNIAEVKRCITQHEEVFKNDNNLGLAKQVIASLYKRNIQRLTQTYLTLSLQDIANTVQLDDEKDAELHILQMIKDGDIFAAINQKDGMVSFQEDPEQYNTCDMTQRLNNEIHHIVCLAKKLTWVDEQVSCDHAYLSKIGRD 411          
BLAST of mRNA_F-serratus_M_contig1209.1637.1 vs. uniprot
Match: A0A8J9SBT6_9CHLO (COP9 signalosome complex subunit 3 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SBT6_9CHLO)

HSP 1 Score: 230 bits (587), Expect = 6.850e-65
Identity = 128/357 (35.85%), Postives = 205/357 (57.42%), Query Frame = 2
Query:  407 SLGSLHLLAAQAEVLNPCDR-TPFIDVTLAFLEHCQWRHVVIAPKYVGDVCQKFAQICILEGRAGEAILPLRTAAYRMGSATSSLTPVHPEFLQCCIMAKCYNLGARFMDEQPVFGVEPKVTALTPAHFLRHFYYGGLIYIGTKRWRDALDSFVMLLAAPATVLSSLVIEGYKKMVLVSLILSGNLPEIPKYAPNVITRHLKSHAPAYETLGKCCQAEDIKGLKAAAVAGNEIFKQDGNMGLVKQVLSDLTKRKIMQLTHTYITLSLRDISDKVGLEHPDDTERHILQMIEAGEICAKITSPAATVHFQEDCQLFSSSKMTPRLEADLQSTAELTERVRKLEAKLLTNPVFVQKMMG 1474
            SLG L LL A+     P      F+++   F+  C    + IA +    +C+K  +  +L      A+LPLRTA  ++  +T+ +TP+H +  Q C+++KCY      +D + V  V+PK TA+T   FL   YYGGL+Y G + +  AL+ F+  L AP  V++++ +  YKK VLVSLI +G+   +PK+ P  +TR  K+   AY+ L K     D + L  A    ++ F++DGN GLVK  LS  T R I +LT TY+TLSL DI+ +VGL    + E+HILQMI+ G++ A+I   A  V F ED + + ++K+  R++A +Q +  ++ R+  +  ++  + V++ K+ G
Sbjct:   50 SLGYLVLLEARGGPATPSHPDVAFVNLAADFIRDCDESQIRIAKEQFVSMCRKLKEQLLLLDSPRRAVLPLRTALGKLAESTTLVTPLHADLCQVCVLSKCYGAALPVLDLE-VDDVDPKKTAMTAKDFLLFGYYGGLVYTGLRDYSKALNMFLYTLTAPTMVVNAITMAAYKKFVLVSLIHAGSFKGLPKHTPAAVTRSTKAECSAYQDLEKAYSKTD-EDLHKAVNTHSQAFQEDGNAGLVKLALSARTMRAIQKLTQTYLTLSLADIAAQVGLGSAAEAEQHILQMIDGGQVFARIDEAAGMVRFLEDPERYDTAKVVQRIDAQIQQSIAISGRLTDINQRISCDKVYLNKVGG 404          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1209.1637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KL38_9PHAE6.530e-21268.95COP9 signalosome complex subunit 3 n=2 Tax=Ectocar... [more]
A0A1Y1IEP4_KLENI4.710e-7137.08COP9 signalosome subunit CSN3 n=1 Tax=Klebsormidiu... [more]
A0A388JJP1_CHABU5.800e-7137.50PCI domain-containing protein (Fragment) n=1 Tax=C... [more]
A0A7S2ML15_9STRA1.570e-6836.95COP9 signalosome complex subunit 3 n=1 Tax=Dictyoc... [more]
A0A2R6XR65_MARPO4.800e-6837.16PCI domain-containing protein n=1 Tax=Marchantia p... [more]
A0A6B2L4X0_9EUKA1.030e-6635.85COP9 signalosome complex subunit 3 n=1 Tax=Arcella... [more]
A0A6V7PNK9_ANACO1.050e-6633.25PCI domain-containing protein n=5 Tax=Ananas comos... [more]
A0A0D6QYT4_ARACU8.170e-6633.80PCI domain-containing protein n=1 Tax=Araucaria cu... [more]
A9SV28_PHYPA2.530e-6535.54Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A8J9SBT6_9CHLO6.850e-6535.85COP9 signalosome complex subunit 3 n=1 Tax=Coccomy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1209contigF-serratus_M_contig1209:87892..93829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score536.6
Seed ortholog evalue1.1e-149
Seed eggNOG ortholog2880.D7G4S3
Preferred nameCOPS3
KEGG koko:K00413,ko:K12177
KEGG Pathwayko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000281,GO:0000338,GO:0000715,GO:0000910,GO:0001701,GO:0002009,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007282,GO:0007283,GO:0007292,GO:0007293,GO:0007346,GO:0008150,GO:0008152,GO:0008180,GO:0008283,GO:0008356,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010389,GO:0010564,GO:0010971,GO:0016043,GO:0016333,GO:0019538,GO:0019827,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023052,GO:0030154,GO:0030163,GO:0030718,GO:0030727,GO:0031647,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034641,GO:0036099,GO:0036211,GO:0040001,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045787,GO:0045931,GO:0046483,GO:0048134,GO:0048135,GO:0048138,GO:0048140,GO:0048142,GO:0048232,GO:0048468,GO:0048477,GO:0048518,GO:0048522,GO:0048609,GO:0048646,GO:0048729,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051179,GO:0051234,GO:0051276,GO:0051293,GO:0051301,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0060429,GO:0061640,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0090068,GO:0090304,GO:0098727,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902749,GO:1902751,GO:1902850,GO:1903047
EggNOG free text desc.protein deneddylation
EggNOG OGsKOG2582@1,KOG2582@2759
Ec32 ortholog descriptionWinged helix-turn-helix DNA-binding domain
Ec32 orthologEc-20_000580.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121
Exons10
Model size2088
Cds size1356
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1209.1637.1prot_F-serratus_M_contig1209.1637.1Fucus serratus malepolypeptideF-serratus_M_contig1209 88088..93293 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929124.1610265-UTR-F-serratus_M_contig1209:87891..880871622929124.1610265-UTR-F-serratus_M_contig1209:87891..88087Fucus serratus maleUTRF-serratus_M_contig1209 87892..88087 +
1690962715.083885-UTR-F-serratus_M_contig1209:87891..880871690962715.083885-UTR-F-serratus_M_contig1209:87891..88087Fucus serratus maleUTRF-serratus_M_contig1209 87892..88087 +
1622929124.3116345-UTR-F-serratus_M_contig1209:93293..938291622929124.3116345-UTR-F-serratus_M_contig1209:93293..93829Fucus serratus maleUTRF-serratus_M_contig1209 93294..93829 +
1690962715.2233448-UTR-F-serratus_M_contig1209:93293..938291690962715.2233448-UTR-F-serratus_M_contig1209:93293..93829Fucus serratus maleUTRF-serratus_M_contig1209 93294..93829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929124.1753178-CDS-F-serratus_M_contig1209:88087..881741622929124.1753178-CDS-F-serratus_M_contig1209:88087..88174Fucus serratus maleCDSF-serratus_M_contig1209 88088..88174 +
1690962715.0998333-CDS-F-serratus_M_contig1209:88087..881741690962715.0998333-CDS-F-serratus_M_contig1209:88087..88174Fucus serratus maleCDSF-serratus_M_contig1209 88088..88174 +
1622929124.1941004-CDS-F-serratus_M_contig1209:88433..885791622929124.1941004-CDS-F-serratus_M_contig1209:88433..88579Fucus serratus maleCDSF-serratus_M_contig1209 88434..88579 +
1690962715.1093972-CDS-F-serratus_M_contig1209:88433..885791690962715.1093972-CDS-F-serratus_M_contig1209:88433..88579Fucus serratus maleCDSF-serratus_M_contig1209 88434..88579 +
1622929124.2081244-CDS-F-serratus_M_contig1209:88766..888791622929124.2081244-CDS-F-serratus_M_contig1209:88766..88879Fucus serratus maleCDSF-serratus_M_contig1209 88767..88879 +
1690962715.1220973-CDS-F-serratus_M_contig1209:88766..888791690962715.1220973-CDS-F-serratus_M_contig1209:88766..88879Fucus serratus maleCDSF-serratus_M_contig1209 88767..88879 +
1622929124.219989-CDS-F-serratus_M_contig1209:89018..891611622929124.219989-CDS-F-serratus_M_contig1209:89018..89161Fucus serratus maleCDSF-serratus_M_contig1209 89019..89161 +
1690962715.1432238-CDS-F-serratus_M_contig1209:89018..891611690962715.1432238-CDS-F-serratus_M_contig1209:89018..89161Fucus serratus maleCDSF-serratus_M_contig1209 89019..89161 +
1622929124.2306628-CDS-F-serratus_M_contig1209:89651..898341622929124.2306628-CDS-F-serratus_M_contig1209:89651..89834Fucus serratus maleCDSF-serratus_M_contig1209 89652..89834 +
1690962715.1544085-CDS-F-serratus_M_contig1209:89651..898341690962715.1544085-CDS-F-serratus_M_contig1209:89651..89834Fucus serratus maleCDSF-serratus_M_contig1209 89652..89834 +
1622929124.2457876-CDS-F-serratus_M_contig1209:90130..903131622929124.2457876-CDS-F-serratus_M_contig1209:90130..90313Fucus serratus maleCDSF-serratus_M_contig1209 90131..90313 +
1690962715.1706185-CDS-F-serratus_M_contig1209:90130..903131690962715.1706185-CDS-F-serratus_M_contig1209:90130..90313Fucus serratus maleCDSF-serratus_M_contig1209 90131..90313 +
1622929124.2584147-CDS-F-serratus_M_contig1209:91208..912681622929124.2584147-CDS-F-serratus_M_contig1209:91208..91268Fucus serratus maleCDSF-serratus_M_contig1209 91209..91268 +
1690962715.1787157-CDS-F-serratus_M_contig1209:91208..912681690962715.1787157-CDS-F-serratus_M_contig1209:91208..91268Fucus serratus maleCDSF-serratus_M_contig1209 91209..91268 +
1622929124.2741265-CDS-F-serratus_M_contig1209:91493..915901622929124.2741265-CDS-F-serratus_M_contig1209:91493..91590Fucus serratus maleCDSF-serratus_M_contig1209 91494..91590 +
1690962715.189975-CDS-F-serratus_M_contig1209:91493..915901690962715.189975-CDS-F-serratus_M_contig1209:91493..91590Fucus serratus maleCDSF-serratus_M_contig1209 91494..91590 +
1622929124.2849195-CDS-F-serratus_M_contig1209:91697..919541622929124.2849195-CDS-F-serratus_M_contig1209:91697..91954Fucus serratus maleCDSF-serratus_M_contig1209 91698..91954 +
1690962715.2040474-CDS-F-serratus_M_contig1209:91697..919541690962715.2040474-CDS-F-serratus_M_contig1209:91697..91954Fucus serratus maleCDSF-serratus_M_contig1209 91698..91954 +
1622929124.2970939-CDS-F-serratus_M_contig1209:93206..932931622929124.2970939-CDS-F-serratus_M_contig1209:93206..93293Fucus serratus maleCDSF-serratus_M_contig1209 93207..93293 +
1690962715.214276-CDS-F-serratus_M_contig1209:93206..932931690962715.214276-CDS-F-serratus_M_contig1209:93206..93293Fucus serratus maleCDSF-serratus_M_contig1209 93207..93293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1209.1637.1

>prot_F-serratus_M_contig1209.1637.1 ID=prot_F-serratus_M_contig1209.1637.1|Name=mRNA_F-serratus_M_contig1209.1637.1|organism=Fucus serratus male|type=polypeptide|length=452bp
MMEAALEAMRLPTNNDAELTTMNSLLAKQGDALQEIGRSFSQTMGSDGAG
SAAAAVSPLLVHAMDHTKRASLGSLHLLAAQAEVLNPCDRTPFIDVTLAF
LEHCQWRHVVIAPKYVGDVCQKFAQICILEGRAGEAILPLRTAAYRMGSA
TSSLTPVHPEFLQCCIMAKCYNLGARFMDEQPVFGVEPKVTALTPAHFLR
HFYYGGLIYIGTKRWRDALDSFVMLLAAPATVLSSLVIEGYKKMVLVSLI
LSGNLPEIPKYAPNVITRHLKSHAPAYETLGKCCQAEDIKGLKAAAVAGN
EIFKQDGNMGLVKQVLSDLTKRKIMQLTHTYITLSLRDISDKVGLEHPDD
TERHILQMIEAGEICAKITSPAATVHFQEDCQLFSSSKMTPRLEADLQST
AELTERVRKLEAKLLTNPVFVQKMMGDHSVPGAGLGGAVGYSTWDDIGMG
D*
back to top

mRNA from alignment at F-serratus_M_contig1209:87892..93829+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1209.1637.1 ID=mRNA_F-serratus_M_contig1209.1637.1|Name=mRNA_F-serratus_M_contig1209.1637.1|organism=Fucus serratus male|type=mRNA|length=5938bp|location=Sequence derived from alignment at F-serratus_M_contig1209:87892..93829+ (Fucus serratus male)
CAAAGGCAAGCCCAGCGAGCCATCCAAAGACAGCTAATACGCGAATTGCA GTGTTGTATCCCGAGTTGAAGTTGCTGCGCGACATCATTGCGCGTTTCGT GCCTGATTTTTTGTTCATCGCCAACATATTCATATCAGAAACTCTACGTG AACGCTCCACTTTTCTTCGTCCTTACTTCATCAAGGCTCGCCTCATATGA TGGAGGCTGCTCTGGAAGCCATGAGGTTGCCAACAAACAACGACGCAGAA CTTACAACGATGAATAGTCTACTCGCGAAGCAGGTATGTTTTGGCAAAGT AGAGTAGTACGCACTCGCAAGCAGTGGCGAACAGTCATTCTTGTGTCTTC AGAGTAGTTTCCCAAGAAAAATGAAAATCTCCGCCATCAATTTCACTCTG TGGATAACGCAAGCACACCAGTGCAGTATGTTGTAGTTCTCGACCCTTAT CAGCCGATCCTGGCGCTTTCTGCGTTTTGCATCAAGCCCCAGTTTTCACC CCGGAAATAACTGTCTGTATGGAAAAATGAACACCACCCCAGGGTGACGC ACTCCAAGAAATTGGGAGGAGTTTTTCACAAACCATGGGGAGTGACGGTG CAGGATCGGCGGCAGCAGCGGTCAGTCCGCTTCTTGTGCACGCGATGGAT CACACCAAAAGGGCATCTCTGGGCAGCCTACATCTCCTGTAAGCTTTTAG TGGTAATACATTGGACATTGTAGTGGCATACTCAGTTACCATTTTACCTC TCGGACAGGTACCAAGTCCTCGTGGAGTTTTTGACAACGCCCGCCTACTG CTGTAGCACGAAAGGCCCGAAAACACGAAAGACTCTGCTCTTAAAAATCA TTGCTCCGATCCGTACTTTTCGCAGCGCTGCACAAGCAGAGGTTCTGAAC CCATGCGACAGGACACCCTTCATCGACGTTACGTTGGCATTTCTTGAACA CTGCCAATGGCGGCACGTTGTCATCGCTCCGAAATATGGTGAGTCTAAAT CGAATACTGACGAAGTAACCTTTCCCGCCGATGTAGTTGTCACTGATCAG AGCATAGCATGAAAGGATATGCTCAGCATCTATTTGCCATATCTTCTTTT TCCCGCTCCTCTTGACTTCAATTGAAGTTGGAGATGTTTGCCAGAAGTTC GCCCAAATCTGCATATTGGAAGGAAGAGCAGGAGAGGCGATCTTGCCACT AAGAACTGCGGCGTACCGTATGGGTTCAGCGACATCGAGCCTCACACCTG TGCACCCCGAATTCCTACAGGTAAATACGTTCTGTTGCGTTACTAACATG CTGTTGTCTTACTCAAAGATGACATCGTTTTTTGCTGGAATTTTTTACCT TGTAGTCTTCGAACAGCACAGTCTACAGGTAGGTTCTACGTTGATGTGCC ATAGGCATATTGAAGGGGAATGACCTGCGCGTAAGAACATGGGTCGCGGC GACAACATTGCTGAAAATGGCGACGAAACCGCTCCGACCGTTCATAATAC ACTTCAAGGATATGGCGCGATGTTCTGATGCGCTAGATTATGTCTCTGTG AACAGCAGCAGGCAAAATAGGAGTGTAAAAAGCGGATTTAGTTTTCTGGA GCAGGTTGCGGTGCCTTGAATGGTTTGGTGTGGTGGAAAGAATCCCCATG GTCTTACTTATCTTGAGTATCCTTAGCATCGACTAACGCTTTCCGCGCTC TTGAGAACCACTAAGACACGCAAGGCAATCTAACGATCGACATGATCCTT TCTCCACAAGTGCTGTATCATGGCCAAATGCTACAACCTCGGTGCTCGGT TCATGGACGAGCAACCTGTCTTCGGTGTGGAGCCCAAAGTTACAGCGCTG ACTCCTGCACACTTTTTGCGGCATTTCTACTACGGAGGGCTTATTTATAT CGGTACCAAACGATGGAGAGATGCCCTCGATAGCTTTGTGATGGTGAGAG GTCTACAGATGCTCCGTAAAAAAAAAATTAGACGTTGTTGCGACGGCGTG TACCGTACTCGTGCTCCAAACTTGAGCGCTCGTCTGAACTTTTGTGAACT CCTGCACTTGGATATTATTTATTCAGTCACCATGCAGCTGGTATAATATA GCTCTATATTGTGCAACCGGCTGTTCTCTCCACTTCTCGATGCAGTAGTT TTATTAGTACTTTCAGTCTCAGTACTCAAAACATCGCCTAGTGATCCCTA CGATTGACACGGACATGATCCGCCTCATCGACTTTGCAGCTCCTCGCTGC CCCGGCAACCGTCTTGAGCTCTTTGGTGATCGAGGGATACAAGAAGATGG TACTAGTATCGCTAATCCTGTCCGGGAATCTTCCAGAAATTCCGAAGTAC GCGCCAAATGTCATCACCCGGCACCTGAAAAGCCATGCACCTGCTTATGA GACGCTGGGGAAATGCTGCCAGGTTTGATTTTTACTACTCAAGAAGACGA ATCAAAATATAAATTAAGTAGGTTTGCTGTCGGCGAATATCACGTTTTCA ACTGTTGATAGGTCAAGGGGCGTCTCGACGTCGATGCTGCCCTGTACTTA TATTGTATCTCAACGTATCTTCACGAGTGCTACACTAAGTGAATTCAGCC TCAGTGTGGAGTATGAGCAGGCTGACGCGGAACGAGACGACCGAACCCGT CCCGCGAGACTAAATTCTCAGGCGCGAACGGGGACAGGGAAATGTTCATT TTCCCTGTTCAGTTGACCACGAGCAGGATTTGCAACCTTACCTGGTTGAT TTAAATATACCCTTCTATATGTGATGGCAATGTATACAGGTATACATTTT TTTGTCATCACATATAGTCTAGCAAGAGAAGGATCAACCGGGTAAGGTTG CCAATCCTGCTCGTGGTCAGCTGAATAGGGAAAATGAACATTTCCCTGTC TCCGTTCGCGCCTGAGAATTTAGTCTCGCGGGACGGGTTCAGTCGTCTCG TTCCGCGTCAGCCTGCTCACTCTCCATACTCAGGCTGAATCTGGTTCATA CTCACAGGATTTCTACCGATTTCTGCAGCGGCGTCCATTTGTTGATTTAA ACCGCCATACGCCATCGGGTCAGTCCCGAGTTTAACGGGTCACGCAATTG CGTACCGATGGCGTTCACTGCTAAGAGTCCGCCGGCACAGCGCCAATAAA CCTGGTAGTTCCAAATGAGTGATGCCTTGACAGGTCACCATGGACCAATT AATATGCACCTCTCTTTCCCGCGCGCACTTTTGGTATGAAGTGTGCATGT TGAAAGTACCGGCAATTGCACCTTAGTGAGAGGTAAAAAACTAAAAATAT CGCCTTACACATCGCAGGCCGAAGATATCAAGGGCCTCAAGGCTGCGGCG GTTGCAGGAAATGAGATTTTCAAGCAGGTATGACGTACGTATTTCGCAGG AGGTGAAACATGCAGCGTTTATTCAAATACCTGTCTAGCTTGAAATAGTT TTACTGTGCTTGAGAGCATTACCTTTGCCACATAACTTTCGGAGTCCCAC ACGGAGCCTAGCGACGTGTTCCTACATGCAGACCGTGCGATTCGGGTATC GCGTCCCTCAGGACTTTAACTTTGTCGAGCGTTTCATTTTTTGCCTCATC AGGATGGCAATATGGGGTTGGTGAAACAGGTCCTCAGCGACCTCACCAAG AGGAAAATAATGCAACTTACCCACACCTACATCACGTTATCTCTGAGAGG TGAGCGAAAGTAGTCTTCTACAGGATTGCTTCATATCCCTTATTATTATC TTCTGCTTGAAAACGCTCTGCTTGGGTCTCAAAAACATCTTCTGTCGGCA CTACAGATATCTCCGACAAGGTCGGTTTGGAACATCCTGATGATACCGAA AGACACATCCTGCAGATGATCGAGGCCGGGGAAATTTGTGCGAAGATAAC ATCCCCTGCCGCGACAGTCCACTTCCAGGAAGACTGTCAACTATTTTCTT CGTCAAAGATGACACCACGCTTGGAGGCAGACCTACAAAGCACTGCTGAG CTTACGGAGAGAGTTCGGAAGCTTGAGGCTAAGCTTCTGACGAACCCAGT TTTCGTCCAGAAGGTTAGAAATTTATAATTTTTCCTTCACGCTATTCGCG CCACAATCTACAAAAACTTCCTTGCACATAAAATTATCCCTATTATTGTA ATAGAGAGTTTACTACGTCCATGAATCTGGTATTGTAACGCCCCTCTCCA AAATGTGTTGTTTATCAAAGTATCGACGGTCTATGTATGTATGGTCAcac atATCGCATGAGTATGGATCAACCGGGTAAGGTTGCCAATCCTGCATGTG GTCAGCTGGACAGGGAAAAATAAGGTTTCCCTGTCCGCGTTGGCGCCGGA GAGTTTGGTCTCGCGACACTGGTTCGGCAGTCCCGTCCCGCGTCAGCCTG CTCATTCTCGATACGCAAGAGGCTGAATCTGGTACTTGCTCACGGGATTC CTCCCGATTTCCGCGGCGGCGTTCATTTATTTATTTGAACGACCATACGC CATCGGGTCAGTCCCGAGTTTATCGGGTCACGCATTTGCGTACCGATGGC GTTCACTGCCGCGAGTCCGCCGGCACATGGCCAGTAAACCTCAAGGTAGT TCCGAACAAATGCTGCCTTGGCAGGTCACCACGTTTGTTGTGTGTATTGC CTTCCCATTTATTCTGGACGTCAGACTTGACGTACCAGTCTCTCTTTCCC ACACCCACTAATGGTATGAAGTGGGCATGTTGAAAGTACCGGCGGTTATG TATATGTATGTATGGTCACACATATAGAAAGAGTATGGATCAACCGGGTA AAGTTGCCAATCCTGCACGTGGTCAGCTGAACAGGGAAACATTATATTTC CCTGTCCGCGTGCGCGCATGGGAATTTGGTCTCGCGAGACGGGTTCGGCA GTCCCGTCCCGCGTCAGCCTGCTCATCTCCATACTCAGGCTGAATCCGGT GCTTACTTACGGGATTCCTGCCGAGTTCCGCGGCGGCATCCATTTATTTA TTGAAACCGCCATACGCCATCGGGTCAGTCCCGAGTATATCTGGTCACGT AAGTGCGTACAGATTGTGTTCAATGCCGAGAGTCCGCCGGCACAGGGCCA GTAAACCTGAAGGTAGTTCCGAACGAGTGCTGCCTTGGCAGGTAACCATG GACCAATCAAAATACCCCTCTTTTCCCGCACCCACTAATGGTATGAAGTG GGCATGTGGAGAGTACTGGCGAGTTATATAGCTCTATGTTTCATGACTGC ACTTGTAATTCAAATATGTACCAGCCCGTTACTTTTTGTTGACTTCCACC ATTGCCGTGTCACAGATGATGGGAGACCATTCTGTTCCAGGGGCTGGCCT CGGAGGTGCTGTTGGCTACTCTACATGGGACGACATCGGAATGGGAGATT GAACAATTGAAGTACAAATCAGTTTCTTTGGACGGCACTACTGTCTGTAG GCTCGATATTTTTCCGTCGATTGTTCCCAAGACGTCGACTCTAGCGCAAA AAATGATGGTCGCATGTGACCCCGGTCCGAGTTGTACACCCAGTGCGTGA TTTTGCCCTATTTCGGCGGATTCCTGACTTTGCTTGTACATCTAGTATAC GAGCTGTAAACACAACATTTCGTCAACACCGGGCAAGAAAGGAGCTCTTT GCATGATATTCGCGAACGTTCCGTTTAACTCCGAGTATTTGTTTATTAAT ATTTTTCAACAGTTCGAAACGTATGTTGGCCCCATCATGGAACACTTCGC CTTCAAGCGCTAGCCTTCGTAGTTACAGCTATGATAGCTCCACAGCAGTT CAAATTAATGTTCACCTATGCGCAGGCGCCGTCGGACCTCTTGGTCGAAT TCATCTTTAAAAAAACGTACCTGGTACTAGTCTATCTCCGCAGTGTGAGC CACGCCACGTTCCCTAATGGCCGTTCTAGACCAATTAT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1209:87892..93829+

>mRNA_F-serratus_M_contig1209.1637.1 ID=mRNA_F-serratus_M_contig1209.1637.1|Name=mRNA_F-serratus_M_contig1209.1637.1|organism=Fucus serratus male|type=CDS|length=2712bp|location=Sequence derived from alignment at F-serratus_M_contig1209:87892..93829+ (Fucus serratus male)
ATGATGGAGGCTGCTCTGGAAGCCATGAGGTTGCCAACAAACAACGACGC
AGAACTTACAACGATGAATAGTCTACTCGCGAAGCAGATGATGGAGGCTG
CTCTGGAAGCCATGAGGTTGCCAACAAACAACGACGCAGAACTTACAACG
ATGAATAGTCTACTCGCGAAGCAGGGTGACGCACTCCAAGAAATTGGGAG
GAGTTTTTCACAAACCATGGGGAGTGACGGTGCAGGATCGGCGGCAGCAG
CGGTCAGTCCGCTTCTTGTGCACGCGATGGATCACACCAAAAGGGCATCT
CTGGGCAGCCTACATCTCCTGGTGACGCACTCCAAGAAATTGGGAGGAGT
TTTTCACAAACCATGGGGAGTGACGGTGCAGGATCGGCGGCAGCAGCGGT
CAGTCCGCTTCTTGTGCACGCGATGGATCACACCAAAAGGGCATCTCTGG
GCAGCCTACATCTCCTCGCTGCACAAGCAGAGGTTCTGAACCCATGCGAC
AGGACACCCTTCATCGACGTTACGTTGGCATTTCTTGAACACTGCCAATG
GCGGCACGTTGTCATCGCTCCGAAATATGCGCTGCACAAGCAGAGGTTCT
GAACCCATGCGACAGGACACCCTTCATCGACGTTACGTTGGCATTTCTTG
AACACTGCCAATGGCGGCACGTTGTCATCGCTCCGAAATATGTTGGAGAT
GTTTGCCAGAAGTTCGCCCAAATCTGCATATTGGAAGGAAGAGCAGGAGA
GGCGATCTTGCCACTAAGAACTGCGGCGTACCGTATGGGTTCAGCGACAT
CGAGCCTCACACCTGTGCACCCCGAATTCCTACAGTTGGAGATGTTTGCC
AGAAGTTCGCCCAAATCTGCATATTGGAAGGAAGAGCAGGAGAGGCGATC
TTGCCACTAAGAACTGCGGCGTACCGTATGGGTTCAGCGACATCGAGCCT
CACACCTGTGCACCCCGAATTCCTACAGTGCTGTATCATGGCCAAATGCT
ACAACCTCGGTGCTCGGTTCATGGACGAGCAACCTGTCTTCGGTGTGGAG
CCCAAAGTTACAGCGCTGACTCCTGCACACTTTTTGCGGCATTTCTACTA
CGGAGGGCTTATTTATATCGGTACCAAACGATGGAGAGATGCCCTCGATA
GCTTTGTGATGTGCTGTATCATGGCCAAATGCTACAACCTCGGTGCTCGG
TTCATGGACGAGCAACCTGTCTTCGGTGTGGAGCCCAAAGTTACAGCGCT
GACTCCTGCACACTTTTTGCGGCATTTCTACTACGGAGGGCTTATTTATA
TCGGTACCAAACGATGGAGAGATGCCCTCGATAGCTTTGTGATGCTCCTC
GCTGCCCCGGCAACCGTCTTGAGCTCTTTGGTGATCGAGGGATACAAGAA
GATGGTACTAGTATCGCTAATCCTGTCCGGGAATCTTCCAGAAATTCCGA
AGTACGCGCCAAATGTCATCACCCGGCACCTGAAAAGCCATGCACCTGCT
TATGAGACGCTGGGGAAATGCTGCCAGCTCCTCGCTGCCCCGGCAACCGT
CTTGAGCTCTTTGGTGATCGAGGGATACAAGAAGATGGTACTAGTATCGC
TAATCCTGTCCGGGAATCTTCCAGAAATTCCGAAGTACGCGCCAAATGTC
ATCACCCGGCACCTGAAAAGCCATGCACCTGCTTATGAGACGCTGGGGAA
ATGCTGCCAGGCCGAAGATATCAAGGGCCTCAAGGCTGCGGCGGTTGCAG
GAAATGAGATTTTCAAGCAGGCCGAAGATATCAAGGGCCTCAAGGCTGCG
GCGGTTGCAGGAAATGAGATTTTCAAGCAGGATGGCAATATGGGGTTGGT
GAAACAGGTCCTCAGCGACCTCACCAAGAGGAAAATAATGCAACTTACCC
ACACCTACATCACGTTATCTCTGAGAGGATGGCAATATGGGGTTGGTGAA
ACAGGTCCTCAGCGACCTCACCAAGAGGAAAATAATGCAACTTACCCACA
CCTACATCACGTTATCTCTGAGAGATATCTCCGACAAGGTCGGTTTGGAA
CATCCTGATGATACCGAAAGACACATCCTGCAGATGATCGAGGCCGGGGA
AATTTGTGCGAAGATAACATCCCCTGCCGCGACAGTCCACTTCCAGGAAG
ACTGTCAACTATTTTCTTCGTCAAAGATGACACCACGCTTGGAGGCAGAC
CTACAAAGCACTGCTGAGCTTACGGAGAGAGTTCGGAAGCTTGAGGCTAA
GCTTCTGACGAACCCAGTTTTCGTCCAGAAGATATCTCCGACAAGGTCGG
TTTGGAACATCCTGATGATACCGAAAGACACATCCTGCAGATGATCGAGG
CCGGGGAAATTTGTGCGAAGATAACATCCCCTGCCGCGACAGTCCACTTC
CAGGAAGACTGTCAACTATTTTCTTCGTCAAAGATGACACCACGCTTGGA
GGCAGACCTACAAAGCACTGCTGAGCTTACGGAGAGAGTTCGGAAGCTTG
AGGCTAAGCTTCTGACGAACCCAGTTTTCGTCCAGAAGATGATGGGAGAC
CATTCTGTTCCAGGGGCTGGCCTCGGAGGTGCTGTTGGCTACTCTACATG
GGACGACATCGGAATGGGAGATTGAATGATGGGAGACCATTCTGTTCCAG
GGGCTGGCCTCGGAGGTGCTGTTGGCTACTCTACATGGGACGACATCGGA
ATGGGAGATTGA
back to top