mRNA_F-serratus_M_contig1205.1621.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1205.1621.1
Unique NamemRNA_F-serratus_M_contig1205.1621.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1205.1621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1205contigF-serratus_M_contig1205:20353..20823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size472
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929121.1169338-UTR-F-serratus_M_contig1205:20352..205081622929121.1169338-UTR-F-serratus_M_contig1205:20352..20508Fucus serratus maleUTRF-serratus_M_contig1205 20353..20508 +
1690962713.6653068-UTR-F-serratus_M_contig1205:20352..205081690962713.6653068-UTR-F-serratus_M_contig1205:20352..20508Fucus serratus maleUTRF-serratus_M_contig1205 20353..20508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929121.1317737-CDS-F-serratus_M_contig1205:20508..208231622929121.1317737-CDS-F-serratus_M_contig1205:20508..20823Fucus serratus maleCDSF-serratus_M_contig1205 20509..20823 +
1690962713.6834402-CDS-F-serratus_M_contig1205:20508..208231690962713.6834402-CDS-F-serratus_M_contig1205:20508..20823Fucus serratus maleCDSF-serratus_M_contig1205 20509..20823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1205.1621.1prot_F-serratus_M_contig1205.1621.1Fucus serratus malepolypeptideF-serratus_M_contig1205 20509..20823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1205.1621.1

>prot_F-serratus_M_contig1205.1621.1 ID=prot_F-serratus_M_contig1205.1621.1|Name=mRNA_F-serratus_M_contig1205.1621.1|organism=Fucus serratus male|type=polypeptide|length=105bp
MVPALDSSVSGYSTQYSSVSCLCLIKMSSSQTQTEILSTVPALDSSLQIS
AHRCLSWSADFFKMGRSSTSVPLVKVLNTTPSSSLTVNWRDATLGLALEV
VVHLS
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mRNA from alignment at F-serratus_M_contig1205:20353..20823+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1205.1621.1 ID=mRNA_F-serratus_M_contig1205.1621.1|Name=mRNA_F-serratus_M_contig1205.1621.1|organism=Fucus serratus male|type=mRNA|length=471bp|location=Sequence derived from alignment at F-serratus_M_contig1205:20353..20823+ (Fucus serratus male)
CAAATAACGGATTCCATGCGCAGGTCGAAAGCAGTGACGTACTACTGTAT
CTACTGCATAAAGCACGACCGCAGGGCAACACTACCGAAACAACCTTCCG
CTACTATCCTATAGCCAAGATGAAATCCTCGCAGACCCAAACAAAGAATA
CTTTCTATGGTCCCAGCGTTGGATTCATCAGTATCCGGTTACAGTACCCA
GTACTCTTCCGTTAGCTGTTTATGCTTAATCAAGATGAGTTCCTCGCAGA
CCCAAACAGAAATACTTTCTACGGTCCCAGCGTTGGATTCATCATTACAA
ATATCTGCCCACCGATGCTTGTCTTGGTCGGCTGATTTCTTCAAGATGGG
ACGGTCTTCTACTAGCGTTCCACTCGTAAAAGTCTTGAACACTACGCCCT
CGTCGTCTCTTACGGTGAACTGGAGAGATGCTACTCTTGGTCTTGCACTC
GAAGTTGTAGTCCACCTGTCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1205:20353..20823+

>mRNA_F-serratus_M_contig1205.1621.1 ID=mRNA_F-serratus_M_contig1205.1621.1|Name=mRNA_F-serratus_M_contig1205.1621.1|organism=Fucus serratus male|type=CDS|length=630bp|location=Sequence derived from alignment at F-serratus_M_contig1205:20353..20823+ (Fucus serratus male)
ATGGTCCCAGCGTTGGATTCATCAGTATCCGGTTACAGTACCCAGTACTC
TTCCGTTAGCTGTTTATGCTTAATCAAGATGAGTTCCTCGCAGACCCAAA
CAGAAATACTTTCTACGGTCCCAGCGTTGGATTCATCATTACAAATATCT
GCCCACCGATGCTTGTCTTGGTCGGCTGATTTCTTCAAGATGGGACGGTC
TTCTACTAGCGTTCCACTCGTAAAAGTCTTGAACACTACGCCCTCGTCGT
CTCTTACGGTGAACTGGAGAGATGCTACTCTTGGTCTTGCACTCGAAGTT
GTAGTCCACCTGTCAATGGTCCCAGCGTTGGATTCATCAGTATCCGGTTA
CAGTACCCAGTACTCTTCCGTTAGCTGTTTATGCTTAATCAAGATGAGTT
CCTCGCAGACCCAAACAGAAATACTTTCTACGGTCCCAGCGTTGGATTCA
TCATTACAAATATCTGCCCACCGATGCTTGTCTTGGTCGGCTGATTTCTT
CAAGATGGGACGGTCTTCTACTAGCGTTCCACTCGTAAAAGTCTTGAACA
CTACGCCCTCGTCGTCTCTTACGGTGAACTGGAGAGATGCTACTCTTGGT
CTTGCACTCGAAGTTGTAGTCCACCTGTCA
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