mRNA_F-serratus_M_contig1203.1618.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1203.1618.1
Unique NamemRNA_F-serratus_M_contig1203.1618.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1203.1618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1203contigF-serratus_M_contig1203:285076..285692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size617
Cds size366
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929120.9094882-CDS-F-serratus_M_contig1203:285075..2854411622929120.9094882-CDS-F-serratus_M_contig1203:285075..285441Fucus serratus maleCDSF-serratus_M_contig1203 285076..285441 +
1690962713.6014948-CDS-F-serratus_M_contig1203:285075..2854411690962713.6014948-CDS-F-serratus_M_contig1203:285075..285441Fucus serratus maleCDSF-serratus_M_contig1203 285076..285441 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929120.9261768-UTR-F-serratus_M_contig1203:285441..2856921622929120.9261768-UTR-F-serratus_M_contig1203:285441..285692Fucus serratus maleUTRF-serratus_M_contig1203 285442..285692 +
1690962713.614352-UTR-F-serratus_M_contig1203:285441..2856921690962713.614352-UTR-F-serratus_M_contig1203:285441..285692Fucus serratus maleUTRF-serratus_M_contig1203 285442..285692 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1203.1618.1prot_F-serratus_M_contig1203.1618.1Fucus serratus malepolypeptideF-serratus_M_contig1203 285076..285441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1203.1618.1

>prot_F-serratus_M_contig1203.1618.1 ID=prot_F-serratus_M_contig1203.1618.1|Name=mRNA_F-serratus_M_contig1203.1618.1|organism=Fucus serratus male|type=polypeptide|length=122bp
MAPGLRPTHRRQPHYLHGYRGHPVHPCSWWLLRHLEREPGHHRKRCPSVV
RELLVVGKCLFVAERKGRKGLLLRLLLLLENVEACRGGGREAVYYWSWSW
RRAIPSDRAKCSSVQKIAIRC*
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mRNA from alignment at F-serratus_M_contig1203:285076..285692+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1203.1618.1 ID=mRNA_F-serratus_M_contig1203.1618.1|Name=mRNA_F-serratus_M_contig1203.1618.1|organism=Fucus serratus male|type=mRNA|length=617bp|location=Sequence derived from alignment at F-serratus_M_contig1203:285076..285692+ (Fucus serratus male)
ATGGCACCAGGGCTCCGGCCGACCCACCGCCGACAGCCTCACTACCTCCA
CGGCTATCGCGGTCACCCTGTCCACCCCTGCTCGTGGTGGCTGCTGCGGC
ATCTTGAAAGGGAACCAGGGCACCATCGAAAGCGGTGTCCGTCGGTTGTC
CGTGAGCTCCTTGTTGTTGGTAAGTGCTTGTTTGTTGCTGAGAGAAAGGG
GCGAAAGGGCTTGTTGTTGAGGCTGCTGTTGTTGCTCGAAAACGTCGAAG
CCTGCCGTGGAGGAGGCCGAGAAGCCGTTTACTACTGGAGCTGGAGCTGG
AGAAGAGCTATACCCTCCGACCGAGCGAAATGCTCCAGTGTTCAAAAGAT
CGCCATTCGCTGCTGAAACCATGCCCCCGACGCCAGTGCCTCCACCAGAA
GGAGCCGCGTTGACGTCTCCAAACATGGACTCAAAAGGGTTGCCCGACGC
CGTCAGGTCGCCGTGGTTGTTTGTGGGCACCGGCCCCGTCTGCGATCGAA
ACTGGCCGAAGCTATCCATGGTGCCGGCGCTGCCAACACAGCATTAGGTC
CCTGGCGAGAGGGTATTGGCGCAGAGGAATTGACGACATCGAAGTACTCT
GGAGAGGGAACGGCCGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1203:285076..285692+

>mRNA_F-serratus_M_contig1203.1618.1 ID=mRNA_F-serratus_M_contig1203.1618.1|Name=mRNA_F-serratus_M_contig1203.1618.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig1203:285076..285692+ (Fucus serratus male)
ATGGCACCAGGGCTCCGGCCGACCCACCGCCGACAGCCTCACTACCTCCA
CGGCTATCGCGGTCACCCTGTCCACCCCTGCTCGTGGTGGCTGCTGCGGC
ATCTTGAAAGGGAACCAGGGCACCATCGAAAGCGGTGTCCGTCGGTTGTC
CGTGAGCTCCTTGTTGTTGGTAAGTGCTTGTTTGTTGCTGAGAGAAAGGG
GCGAAAGGGCTTGTTGTTGAGGCTGCTGTTGTTGCTCGAAAACGTCGAAG
CCTGCCGTGGAGGAGGCCGAGAAGCCGTTTACTACTGGAGCTGGAGCTGG
AGAAGAGCTATACCCTCCGACCGAGCGAAATGCTCCAGTGTTCAAAAGAT
CGCCATTCGCTGCTGAATGGCACCAGGGCTCCGGCCGACCCACCGCCGAC
AGCCTCACTACCTCCACGGCTATCGCGGTCACCCTGTCCACCCCTGCTCG
TGGTGGCTGCTGCGGCATCTTGAAAGGGAACCAGGGCACCATCGAAAGCG
GTGTCCGTCGGTTGTCCGTGAGCTCCTTGTTGTTGGTAAGTGCTTGTTTG
TTGCTGAGAGAAAGGGGCGAAAGGGCTTGTTGTTGAGGCTGCTGTTGTTG
CTCGAAAACGTCGAAGCCTGCCGTGGAGGAGGCCGAGAAGCCGTTTACTA
CTGGAGCTGGAGCTGGAGAAGAGCTATACCCTCCGACCGAGCGAAATGCT
CCAGTGTTCAAAAGATCGCCATTCGCTGCTGA
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