mRNA_F-serratus_M_contig1202.1615.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1202.1615.1 vs. uniprot
Match: UPI000A05AADA (hypothetical protein n=1 Tax=Coraliomargarita akajimensis TaxID=395922 RepID=UPI000A05AADA) HSP 1 Score: 69.7 bits (169), Expect = 3.460e-11 Identity = 44/124 (35.48%), Postives = 57/124 (45.97%), Query Frame = 2
Query: 80 SEPKAHVHGASCGHVAVLHDDHVDFLMGGGQLECHDRREDKKGNRDRWVSFSNEGSEAVDCSCDGGEQASAGSSTHASHGDGHWDGTRAERERCMGESHGPQCDHERIHHAGHLDYVVNGRLIH 451
S+ H HG CGH A+ H DHVD+L G H ++ G ++ + AVD S +G HA+H DGH HGP C HE I H H+DY+V+GRL H
Sbjct: 6 SDHHDHQHGKGCGHTAIQHGDHVDYLHDG-----HLHHQNADGTVEKHIL-------AVDAS------HPSGCCNHATHSDGH--------------VHGPDCGHEAIQHGDHIDYIVDGRLHH 97
BLAST of mRNA_F-serratus_M_contig1202.1615.1 vs. uniprot
Match: V2TSX5_9GAMM (Uncharacterized protein n=4 Tax=Acinetobacter nectaris TaxID=1219382 RepID=V2TSX5_9GAMM) HSP 1 Score: 67.8 bits (164), Expect = 1.530e-10 Identity = 42/129 (32.56%), Postives = 57/129 (44.19%), Query Frame = 2
Query: 77 VSEPKAHVHGASCGHVAVLHDDHVDFLMGGGQLECHDRREDKKGNRDRWVSFSNEGSEAVDCS----CDGGEQASAGSSTHASHGDGHWDGTRAERERCMGESHGPQCDHERIHHAGHLDYVVNGRLIH 451
+S K HVHG SCGH A+ H+DHVD+L+ G L+ + E K S +G +C+ C G E+ G HGP C HE + H H+DY+V+G L H
Sbjct: 1 MSIEKNHVHGESCGHTAIKHEDHVDYLVN-GHLQSDSKEEHK---------ISVDGKNPAECTQGHECSGHEK---------------------------GHVHGPDCGHEAVPHGDHIDYLVDGHLHH 92
BLAST of mRNA_F-serratus_M_contig1202.1615.1 vs. uniprot
Match: A0A5R9IJL1_9GAMM (Uncharacterized protein n=1 Tax=Thalassotalea litorea TaxID=2020715 RepID=A0A5R9IJL1_9GAMM) HSP 1 Score: 65.1 bits (157), Expect = 1.680e-9 Identity = 40/121 (33.06%), Postives = 52/121 (42.98%), Query Frame = 2
Query: 92 AHVHGASCGHVAVLHDDHVDFLMGGGQLECHDRREDKKGNRDRWVSFSN-EGSEAVDCSCDGGEQASAGSSTHASHGDGHWDGTRAERERCMGESHGPQCDHERIHHAGHLDYVVNGRLIH 451
+H HG CGH A+ H DHVD++ G L C + N + VS N +G +DC C+ G HGP C HE + H H+DY+VNGRL H
Sbjct: 12 SHQHGKGCGHTAIKHGDHVDYIHD-GHLHCPXXXXYDEHNIE--VSEQNPDGCHPMDCGCE------------------------------SGHVHGPDCGHEAVPHGDHIDYLVNGRLHH 99
BLAST of mRNA_F-serratus_M_contig1202.1615.1 vs. uniprot
Match: A0A2N5YE09_9GAMM (Uncharacterized protein n=2 Tax=Halioglobus TaxID=1217416 RepID=A0A2N5YE09_9GAMM) HSP 1 Score: 63.9 bits (154), Expect = 4.430e-9 Identity = 42/119 (35.29%), Postives = 53/119 (44.54%), Query Frame = 2
Query: 95 HVHGASCGHVAVLHDDHVDFLMGGGQLECHDRREDKKGNRDRWVSFSNEGSEAVDCSCDGGEQASAGSSTHASHGDGHWDGTRAERERCMGESHGPQCDHERIHHAGHLDYVVNGRLIH 451
H HG CGH A++H DH+D+L G H D +S N +Q +AGSS A H DGH HGP C HE + H H+DY+V+GRL H
Sbjct: 12 HEHGPGCGHTAIMHGDHIDYLHDG---HLHXXXLDHVDEHVIEISERNP------------DQCTAGSSP-AGHEDGH--------------VHGPSCGHEAVPHGDHIDYLVDGRLHH 100
BLAST of mRNA_F-serratus_M_contig1202.1615.1 vs. uniprot
Match: A0A167K750_9GAMM (Uncharacterized protein n=2 Tax=Pseudoalteromonas luteoviolacea TaxID=43657 RepID=A0A167K750_9GAMM) HSP 1 Score: 63.2 bits (152), Expect = 7.200e-9 Identity = 39/119 (32.77%), Postives = 52/119 (43.70%), Query Frame = 2
Query: 95 HVHGASCGHVAVLHDDHVDFLMGGGQLECHDRREDKKGNRDRWVSFSNEGSEAVDCSCDGGEQASAGSSTHASHGDGHWDGTRAERERCMGESHGPQCDHERIHHAGHLDYVVNGRLIH 451
H HG +CGH AV H DHVD+L+ G HD D+ ++ S ++ + HA +GH HGP C HE I H H+DY+V+GRL H
Sbjct: 12 HAHGPNCGHTAVRHGDHVDYLVDGKLHHPHDDHCDEH---------------VIEVSSVNPDECN-----HAHQSNGH--------------KHGPNCGHEAIQHGDHVDYIVDGRLHH 96
BLAST of mRNA_F-serratus_M_contig1202.1615.1 vs. uniprot
Match: UPI00190366DB (hypothetical protein n=1 Tax=Pelagicoccus mobilis TaxID=415221 RepID=UPI00190366DB) HSP 1 Score: 63.2 bits (152), Expect = 8.330e-9 Identity = 45/149 (30.20%), Postives = 63/149 (42.28%), Query Frame = 2
Query: 80 SEPKAHVHGASCGHVAVLHDDHVDFLMGGGQLECHDRREDKKGNRDRWVSFSNEGSEAVDCSCDGGEQASAGSSTHASHGDGHWDGTRAERERCMGESHGPQCDHERIHHAGHLDYVVNGRLIHTVETLDGGESQGSASFEDHGSIRLL 526
+E H HG CGH A+ H DHVD+L G H ++K G+ + V + + + C G H H DGH HGP C HE + H H+DY+V+GRL H Q +DHG + ++
Sbjct: 8 NESHKHQHGEGCGHTAIRHGDHVDYLHDG-----HLHHQNKDGSVEEHVLPVTKDNPS---GCSG--------VNHLHHEDGH--------------VHGPGCGHEAVPHGDHIDYIVDGRLHH----------QHGDHCDDHGPVDMV 116
BLAST of mRNA_F-serratus_M_contig1202.1615.1 vs. uniprot
Match: UPI0018A2E385 (hypothetical protein n=1 Tax=Acinetobacter pollinis TaxID=2605270 RepID=UPI0018A2E385) HSP 1 Score: 62.8 bits (151), Expect = 1.010e-8 Identity = 40/119 (33.61%), Postives = 52/119 (43.70%), Query Frame = 2
Query: 95 HVHGASCGHVAVLHDDHVDFLMGGGQLECHDRREDKKGNRDRWVSFSNEGSEAVDCSCDGGEQASAGSSTHASHGDGHWDGTRAERERCMGESHGPQCDHERIHHAGHLDYVVNGRLIH 451
HVHG SCGH A+ HDDHVD+L+ G L+ + E D+ +G E C G E+ G HGP C HE + H H+DY+V+G L H
Sbjct: 9 HVHGKSCGHTAIKHDDHVDYLVD-GHLQNETQGEHVLPVNDQNPEECTQGHE-----CSGHEK---------------------------GHVHGPNCGHEAVPHGDHVDYLVDGHLHH 94
BLAST of mRNA_F-serratus_M_contig1202.1615.1 vs. uniprot
Match: A3WYU0_9BRAD (Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A TaxID=314253 RepID=A3WYU0_9BRAD) HSP 1 Score: 61.6 bits (148), Expect = 2.860e-8 Identity = 46/144 (31.94%), Postives = 59/144 (40.97%), Query Frame = 2
Query: 95 HVHGASCGHVAVLHDDHVDFLMGGGQLECHDRREDKKGNRDRWVSFSNEGSEAVDCSCDGGEQASAGSSTHASHGDGHWDGTRAERERCMGESHGPQCDHERIHHAGHLDYVVNGRLIHTVETLDGGESQGSASFEDHGSIRLL 526
H HG SCGHVAV H DHVD+L G H + D V+ N C+ + G H H GH HGP C H+ + H H+DY+VNGRL H +DHG+I ++
Sbjct: 11 HKHGPSCGHVAVKHGDHVDYLHDG---HLHHQTGDVVEEHTIEVNAENPDR----CTPEFG---------HVGHDAGH--------------VHGPDCGHQAVPHGDHVDYLVNGRLHHPXXXX----------CDDHGAIEIV 114
BLAST of mRNA_F-serratus_M_contig1202.1615.1 vs. uniprot
Match: UPI00138A3A8A (hypothetical protein n=2 Tax=Vibrio taketomensis TaxID=2572923 RepID=UPI00138A3A8A) HSP 1 Score: 60.8 bits (146), Expect = 4.770e-8 Identity = 38/119 (31.93%), Postives = 47/119 (39.50%), Query Frame = 2
Query: 95 HVHGASCGHVAVLHDDHVDFLMGGGQLECHDRREDKKGNRDRWVSFSNEGSEAVDCSCDGGEQASAGSSTHASHGDGHWDGTRAERERCMGESHGPQCDHERIHHAGHLDYVVNGRLIH 451
H HG CGH A+ H DH+D+L+ G H D E SE +C+ H C G HGP C HE I H H+DY+V+GRL H
Sbjct: 12 HAHGKDCGHTAIRHGDHIDYLVDGVLHHPHG---------DHCDEHVIEASEVNPNACN---------PVHT----------------CQGHVHGPGCGHEAIQHGDHIDYIVDGRLHH 96
BLAST of mRNA_F-serratus_M_contig1202.1615.1 vs. uniprot
Match: UPI001F1F2B9F (hypothetical protein n=1 Tax=Sinobacterium norvegicum TaxID=1641715 RepID=UPI001F1F2B9F) HSP 1 Score: 60.8 bits (146), Expect = 4.770e-8 Identity = 37/119 (31.09%), Postives = 49/119 (41.18%), Query Frame = 2
Query: 95 HVHGASCGHVAVLHDDHVDFLMGGGQLECHDRREDKKGNRDRWVSFSNEGSEAVDCSCDGGEQASAGSSTHASHGDGHWDGTRAERERCMGESHGPQCDHERIHHAGHLDYVVNGRLIH 451
H HG++CGH A+ H DH+D+L G H D+ + SN + C H + G C G HGP C HE I H H D++V+GRL H
Sbjct: 12 HTHGSNCGHTAIRHGDHIDYLADGKLHHPHGGHCDEHS-----IELSN--TNPAQC--------------HPTQG-------------CAGHVHGPDCGHEAIQHDDHTDFIVDGRLHH 96 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1202.1615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1202.1615.1 >prot_F-serratus_M_contig1202.1615.1 ID=prot_F-serratus_M_contig1202.1615.1|Name=mRNA_F-serratus_M_contig1202.1615.1|organism=Fucus serratus male|type=polypeptide|length=157bp MGGGQLECHDRREDKKGNRDRWVSFSNEGSEAVDCSCDGGEQASAGSSTHback to top mRNA from alignment at F-serratus_M_contig1202:104787..107195+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1202.1615.1 ID=mRNA_F-serratus_M_contig1202.1615.1|Name=mRNA_F-serratus_M_contig1202.1615.1|organism=Fucus serratus male|type=mRNA|length=2409bp|location=Sequence derived from alignment at F-serratus_M_contig1202:104787..107195+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1202:104787..107195+ >mRNA_F-serratus_M_contig1202.1615.1 ID=mRNA_F-serratus_M_contig1202.1615.1|Name=mRNA_F-serratus_M_contig1202.1615.1|organism=Fucus serratus male|type=CDS|length=942bp|location=Sequence derived from alignment at F-serratus_M_contig1202:104787..107195+ (Fucus serratus male)back to top |