mRNA_F-serratus_M_contig1200.1609.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1200.1609.1
Unique NamemRNA_F-serratus_M_contig1200.1609.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1200.1609.1 vs. uniprot
Match: D7G1F4_ECTSI (B box-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1F4_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 4.730e-7
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:  139 GCGADWYRADSFSLQKGSMGITKEWASAVRTCCEIGRRHKIMNP 270
            G GA  YR DSF  ++   G T +WA A+RTC E+GRRHKI+NP
Sbjct:  601 GDGATGYREDSFVHKRTGWGYTLDWACALRTCFEVGRRHKILNP 644
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BLAST of mRNA_F-serratus_M_contig1200.1609.1 vs. uniprot
Match: A0A6H5KSQ1_9PHAE (B box-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSQ1_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 5.920e-6
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:  139 GCGADWYRADSFSLQKGSMGITKEWASAVRTCCEIGRRHKIMNP 270
            G GA  YR DSF  ++   G T +WA  +R+C E+GRRHKI+NP
Sbjct:  801 GDGATGYREDSFVHKRTGWGYTLDWACVLRSCFEVGRRHKILNP 844
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1200.1609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1F4_ECTSI4.730e-756.82B box-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5KSQ1_9PHAE5.920e-652.27B box-type domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1200contigF-serratus_M_contig1200:185400..186533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size271
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929118.4168942-CDS-F-serratus_M_contig1200:185399..1856121622929118.4168942-CDS-F-serratus_M_contig1200:185399..185612Fucus serratus maleCDSF-serratus_M_contig1200 185400..185612 +
1690962712.4894257-CDS-F-serratus_M_contig1200:185399..1856121690962712.4894257-CDS-F-serratus_M_contig1200:185399..185612Fucus serratus maleCDSF-serratus_M_contig1200 185400..185612 +
1622929118.4259071-CDS-F-serratus_M_contig1200:186476..1865331622929118.4259071-CDS-F-serratus_M_contig1200:186476..186533Fucus serratus maleCDSF-serratus_M_contig1200 186477..186533 +
1690962712.50279-CDS-F-serratus_M_contig1200:186476..1865331690962712.50279-CDS-F-serratus_M_contig1200:186476..186533Fucus serratus maleCDSF-serratus_M_contig1200 186477..186533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1200.1609.1prot_F-serratus_M_contig1200.1609.1Fucus serratus malepolypeptideF-serratus_M_contig1200 185400..186533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1200.1609.1

>prot_F-serratus_M_contig1200.1609.1 ID=prot_F-serratus_M_contig1200.1609.1|Name=mRNA_F-serratus_M_contig1200.1609.1|organism=Fucus serratus male|type=polypeptide|length=90bp
FGKGNAWQFLRGSSSAGGAPGGNGNGLVTPGGSGAKAADAAASKGKGCGA
DWYRADSFSLQKGSMGITKEWASAVRTCCEIGRRHKIMNP
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mRNA from alignment at F-serratus_M_contig1200:185400..186533+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1200.1609.1 ID=mRNA_F-serratus_M_contig1200.1609.1|Name=mRNA_F-serratus_M_contig1200.1609.1|organism=Fucus serratus male|type=mRNA|length=1134bp|location=Sequence derived from alignment at F-serratus_M_contig1200:185400..186533+ (Fucus serratus male)
TTTGGCAAAGGCAACGCTTGGCAGTTTCTCCGCGGGTCCTCGTCAGCAGG
AGGCGCTCCAGGCGGAAACGGAAACGGACTGGTGACGCCCGGCGGTTCCG
GTGCCAAGGCGGCTGATGCGGCCGCCTCAAAGGGGAAGGGTTGCGGCGCA
GACTGGTACCGAGCCGATTCCTTTTCGCTACAGAAAGGTAGCATGGGGAT
CACAAAGGAGTGGGTGAGTCTGCCTGCAGCCTGTTTGCATCCCGGCCTTT
GCGGTCTGGTATGCCTTCCTGCCCTTGTGCGTTTTGCCTCCCCCCCTTGC
CCGGCGTTTTAGTTTTAATAATTCCGTATTTACCCTACTGTTTGTACTGG
TGGTAGACGCGAAGGCATTGTGGTGTTTATGTATATATATATATATATAT
ATTTTTTTTTTAATTGCAAATAGTTTATTCGTTGTGTGAAGTATTAATTT
ACATCCGTACTTTTTTTTTTTTTTTTTTCCATCTCAATTATCGCCGATGA
GCCTCATTCCCTCCTGCATGTGGTCACTATTAATAAGAATTTTACCATCT
CTCTCCCCGGTTCACGCGTTACGCATTTTTATCGCGATGCAAGTTCAGCA
CTCTTACAGCTCGTCAACCAATGGTTGATTTTTTTACCTACTCACGTTCT
CACGCTTTCCGCTACGGAAGTTCTTTCTTCCGTAACGGAAAGCGTGGGTT
CGTGAGTAAGTAAAATTCAACCATTGGTTGACGTGTTGTAAGATTGCTGA
CCTTGCATCGCGATAAAAGTTGTATGGCGTGAACCGGGGAGAGATGGGAA
GATCCTTCGTGACCACAGGGGCGGTCCATAGGCTATAAGTGAGATTAAAA
TAAGATAAAATAAAATATACTGGTACTTTATGTATACATGTATACATGGT
ACTGTTTATGTATTTTATCCCCCCCCTCTTAAGACAGGTGTTTTGCTGGG
GGTTTCTTGTAAATAATTTTATTCGTTGCTTTTTTTTCCTTCTTCATACG
AATACGTTCATATATATGCAGTACTATCTGAGCTGCATGTACTCGCATGC
TGTATTTTCACCACCTTGCTAAAATAGGCGTCAGCGGTTCGCACGTGCTG
CGAAATTGGCAGAAGGCACAAAATTATGAATCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1200:185400..186533+

>mRNA_F-serratus_M_contig1200.1609.1 ID=mRNA_F-serratus_M_contig1200.1609.1|Name=mRNA_F-serratus_M_contig1200.1609.1|organism=Fucus serratus male|type=CDS|length=540bp|location=Sequence derived from alignment at F-serratus_M_contig1200:185400..186533+ (Fucus serratus male)
TTTGGCAAAGGCAACGCTTGGCAGTTTCTCCGCGGGTCCTCGTCAGCAGG
AGGCGCTCCAGGCGGAAACGGAAACGGACTGGTGACGCCCGGCGGTTCCG
GTGCCAAGGCGGCTGATGCGGCCGCCTCAAAGGGGAAGGGTTGCGGCGCA
GACTGGTACCGAGCCGATTCCTTTTCGCTACAGAAAGGTAGCATGGGGAT
CACAAAGGAGTGGTTTGGCAAAGGCAACGCTTGGCAGTTTCTCCGCGGGT
CCTCGTCAGCAGGAGGCGCTCCAGGCGGAAACGGAAACGGACTGGTGACG
CCCGGCGGTTCCGGTGCCAAGGCGGCTGATGCGGCCGCCTCAAAGGGGAA
GGGTTGCGGCGCAGACTGGTACCGAGCCGATTCCTTTTCGCTACAGAAAG
GTAGCATGGGGATCACAAAGGAGTGGGCGTCAGCGGTTCGCACGTGCTGC
GAAATTGGCAGAAGGCACAAAATTATGAATCCGGCGTCAGCGGTTCGCAC
GTGCTGCGAAATTGGCAGAAGGCACAAAATTATGAATCCG
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