mRNA_F-serratus_M_contig120.1589.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig120.1589.1
Unique NamemRNA_F-serratus_M_contig120.1589.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig120.1589.1 vs. uniprot
Match: A0A6H5JPX0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPX0_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 7.660e-24
Identity = 55/70 (78.57%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:  157 LRYLEEEAGVGAGTPLERARRTVWGMLYADDAGVVSRSQEGLTRMMNIIVEVLGAFGLTVSE-KTETLLM 363
            L YLEEE G GA TPL+R RR VWGMLYADDAGVV RS EGL RMM +IVEV G FGLTVSE KTETLLM
Sbjct:  624 LVYLEEETGAGASTPLDRVRRAVWGMLYADDAGVVLRSAEGLARMMTVIVEVFGKFGLTVSETKTETLLM 693
[Close]
BLAST of mRNA_F-serratus_M_contig120.1589.1 vs. uniprot
Match: A0A6H5JS19_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS19_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 4.120e-23
Identity = 54/70 (77.14%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:  157 LRYLEEEAGVGAGTPLERARRTVWGMLYADDAGVVSRSQEGLTRMMNIIVEVLGAFGLTVSEK-TETLLM 363
            L YLEEE G GA TPL+R RR VWGMLYADDAGVVSRS EGL RMM +IVEV   FGLTVSEK TETLL+
Sbjct:  187 LVYLEEETGAGARTPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTVIVEVFEKFGLTVSEKKTETLLI 256
[Close]
BLAST of mRNA_F-serratus_M_contig120.1589.1 vs. uniprot
Match: A0A6H5KW17_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW17_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.000e-22
Identity = 54/73 (73.97%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:  148 VCYLRYLEEEAGVGAGTPLERARRTVWGMLYADDAGVVSRSQEGLTRMMNIIVEVLGAFGLTVSEK-TETLLM 363
            VC      E AG G  TPL+R RR VWGMLYADDAGVVSRS EGL RMM IIVEV G FGLTVSEK TETLLM
Sbjct:   57 VCLEEGKTEAAG-GKETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLM 128
[Close]
BLAST of mRNA_F-serratus_M_contig120.1589.1 vs. uniprot
Match: A0A6H5KSU8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSU8_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.100e-22
Identity = 53/75 (70.67%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:  142 KDVCYLRYLEEEAGVGAGTPLERARRTVWGMLYADDAGVVSRSQEGLTRMMNIIVEVLGAFGLTVSEK-TETLLM 363
            +++  L   + EAG G  TPL+R RR VWGMLYADDAGVVSRS EGL RMM IIVEV G FGLTVSEK TETLLM
Sbjct:  196 RNLVCLEEGKTEAGGGGETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLM 270
[Close]
BLAST of mRNA_F-serratus_M_contig120.1589.1 vs. uniprot
Match: A0A6H5JZJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ9_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 3.150e-22
Identity = 53/66 (80.30%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:  169 EEEAGVGAGTPLERARRTVWGMLYADDAGVVSRSQEGLTRMMNIIVEVLGAFGLTVSEK-TETLLM 363
            E EAG G  TPL+R RR VWGMLYADDAGVVSRS EGL RMM IIVEV G FGLTVSEK TETLLM
Sbjct:   94 ETEAGGGEETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLM 159
[Close]
BLAST of mRNA_F-serratus_M_contig120.1589.1 vs. uniprot
Match: A0A6H5L3D3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3D3_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 4.930e-22
Identity = 55/70 (78.57%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:  157 LRYLEEEAGVGAGTPLERARRTVWGMLYADDAGVVSRSQEGLTRMMNIIVEVLGAFGLTVSEKT-ETLLM 363
            L YLEE  G GA TPL R RR VWGMLYADDAGVVSRS EGL RMM +IVEV G FGLTVSEKT ETLLM
Sbjct:  234 LVYLEE-TGAGARTPLNRVRRAVWGMLYADDAGVVSRSPEGLARMMTVIVEVFGKFGLTVSEKTTETLLM 302
[Close]
BLAST of mRNA_F-serratus_M_contig120.1589.1 vs. uniprot
Match: A0A6H5KDH5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDH5_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.020e-21
Identity = 55/98 (56.12%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:   73 CRLGCAWTTGNSRTGSRLHRDEGKDVCYLRYLEEEAGVGAGTPLERARRTVWGMLYADDAGVVSRSQEGLTRMMNIIVEVLGAFGLTVSEK-TETLLM 363
            C   CAW  G  + G                       G  TPL+R RR VWGMLYADDAGVVSRS EGL RMM IIVEV G FGLTVSEK TETLLM
Sbjct:    5 CGTWCAWRRGRRKRG-----------------------GEETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLM 79
[Close]
BLAST of mRNA_F-serratus_M_contig120.1589.1 vs. uniprot
Match: A0A6H5JHV5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHV5_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.060e-21
Identity = 54/73 (73.97%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:  148 VCYLRYLEEEAGVGAGTPLERARRTVWGMLYADDAGVVSRSQEGLTRMMNIIVEVLGAFGLTVSEK-TETLLM 363
            VC L   + EAG    TPL+R RR VWGMLYADDAGVVSRS EGL RMM IIVEV G FGLTVSEK TETLLM
Sbjct:  100 VC-LEEGKTEAGGREETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKNTETLLM 171
[Close]
BLAST of mRNA_F-serratus_M_contig120.1589.1 vs. uniprot
Match: A0A6H5JFG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG6_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.590e-21
Identity = 55/73 (75.34%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:  148 VCYLRYLEEEAGVGAGTPLERARRTVWGMLYADDAGVVSRSQEGLTRMMNIIVEVLGAFGLTVSEK-TETLLM 363
            VC L   + EAG G  TPL+R RR VWGMLYADDAGVVSRS EGL RMM IIVEV G FGLTVSEK TETLLM
Sbjct:  120 VC-LEEGKTEAGGGEETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLM 191
[Close]
BLAST of mRNA_F-serratus_M_contig120.1589.1 vs. uniprot
Match: A0A6H5K2V9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V9_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 2.190e-21
Identity = 55/73 (75.34%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:  148 VCYLRYLEEEAGVGAGTPLERARRTVWGMLYADDAGVVSRSQEGLTRMMNIIVEVLGAFGLTVSEK-TETLLM 363
            VC L   + EAG G  TPL+R RR VWGMLYADDAGVVSRS EGL RMM IIVEV G FGLTVSEK TETLLM
Sbjct:  121 VC-LEEGKTEAGGGGETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLM 192
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig120.1589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPX0_9PHAE7.660e-2478.57Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JS19_9PHAE4.120e-2377.14Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KW17_9PHAE1.000e-2273.97Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KSU8_9PHAE2.100e-2270.67Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JZJ9_9PHAE3.150e-2280.30Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L3D3_9PHAE4.930e-2278.57Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDH5_9PHAE1.020e-2156.12Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JHV5_9PHAE1.060e-2173.97Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JFG6_9PHAE1.590e-2175.34Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K2V9_9PHAE2.190e-2175.34Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig120contigF-serratus_M_contig120:370870..371234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929111.9206529-CDS-F-serratus_M_contig120:370869..3712321622929111.9206529-CDS-F-serratus_M_contig120:370869..371232Fucus serratus maleCDSF-serratus_M_contig120 370870..371232 +
1690962710.2634969-CDS-F-serratus_M_contig120:370869..3712321690962710.2634969-CDS-F-serratus_M_contig120:370869..371232Fucus serratus maleCDSF-serratus_M_contig120 370870..371232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig120.1589.1prot_F-serratus_M_contig120.1589.1Fucus serratus malepolypeptideF-serratus_M_contig120 370870..371232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig120.1589.1

>prot_F-serratus_M_contig120.1589.1 ID=prot_F-serratus_M_contig120.1589.1|Name=mRNA_F-serratus_M_contig120.1589.1|organism=Fucus serratus male|type=polypeptide|length=121bp
NDSSDNDKPPYSRLPEQINMGHTACRLGCAWTTGNSRTGSRLHRDEGKDV
CYLRYLEEEAGVGAGTPLERARRTVWGMLYADDAGVVSRSQEGLTRMMNI
IVEVLGAFGLTVSEKTETLLM
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mRNA from alignment at F-serratus_M_contig120:370870..371234+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig120.1589.1 ID=mRNA_F-serratus_M_contig120.1589.1|Name=mRNA_F-serratus_M_contig120.1589.1|organism=Fucus serratus male|type=mRNA|length=365bp|location=Sequence derived from alignment at F-serratus_M_contig120:370870..371234+ (Fucus serratus male)
AACGATTCGTCAGATAATGACAAGCCCCCGTACTCCCGACTGCCCGAACA
GATAAACATGGGCCACACGGCATGCAGGCTCGGGTGCGCATGGACGACGG
GGAACTCTCGGACTGGTTCGAGGTTACACAGGGACGAAGGCAAGGATGTG
TGCTATCTCCGCTACCTCGAAGAGGAGGCTGGAGTTGGGGCGGGGACACC
GTTAGAACGCGCGCGGAGGACGGTATGGGGAATGCTCTATGCCGACGACG
CCGGCGTCGTATCGAGATCCCAAGAAGGGTTGACGAGGATGATGAACATA
ATCGTGGAAGTGCTTGGGGCATTCGGCCTGACAGTGTCGGAGAAGACAGA
GACTCTCTTGATGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig120:370870..371234+

>mRNA_F-serratus_M_contig120.1589.1 ID=mRNA_F-serratus_M_contig120.1589.1|Name=mRNA_F-serratus_M_contig120.1589.1|organism=Fucus serratus male|type=CDS|length=726bp|location=Sequence derived from alignment at F-serratus_M_contig120:370870..371234+ (Fucus serratus male)
AACGATTCGTCAGATAATGACAAGCCCCCGTACTCCCGACTGCCCGAACA
GATAAACATGGGCCACACGGCATGCAGGCTCGGGTGCGCATGGACGACGG
GGAACTCTCGGACTGGTTCGAGGTTACACAGGGACGAAGGCAAGGATGTG
TGCTATCTCCGCTACCTCGAAGAGGAGGCTGGAGTTGGGGCGGGGACACC
GTTAGAACGCGCGCGGAGGACGGTATGGGGAATGCTCTATGCCGACGACG
CCGGCGTCGTATCGAGATCCCAAGAAGGGTTGACGAGGATGATGAACATA
ATCGTGGAAGTGCTTGGGGCATTCGGCCTGACAGTGTCGGAGAAGACAGA
GACTCTCTTGATGAACGATTCGTCAGATAATGACAAGCCCCCGTACTCCC
GACTGCCCGAACAGATAAACATGGGCCACACGGCATGCAGGCTCGGGTGC
GCATGGACGACGGGGAACTCTCGGACTGGTTCGAGGTTACACAGGGACGA
AGGCAAGGATGTGTGCTATCTCCGCTACCTCGAAGAGGAGGCTGGAGTTG
GGGCGGGGACACCGTTAGAACGCGCGCGGAGGACGGTATGGGGAATGCTC
TATGCCGACGACGCCGGCGTCGTATCGAGATCCCAAGAAGGGTTGACGAG
GATGATGAACATAATCGTGGAAGTGCTTGGGGCATTCGGCCTGACAGTGT
CGGAGAAGACAGAGACTCTCTTGATG
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