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Homology
BLAST of mRNA_F-serratus_M_contig120.1593.1 vs. uniprot
Match: A0A6H5K094_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K094_9PHAE) HSP 1 Score: 154 bits (389), Expect = 2.550e-39 Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 2
Query: 203 MEQVFFRLHVRFVTTVTRLLSPKVRRVLEYVTLGNAFCLLLSLAWLHTRFVNPKG-KGSAVSCLPAALERAGVDPAQIHVLQIHLRRP 463
MEQVFFRLHVRFVTTVTRLLSPK RR+LEYVTL NAF L+ SLAWLHTRFVNPKG +GSAVSCLPAALE+AGVDPAQ+HVLQIH+R+P
Sbjct: 1 MEQVFFRLHVRFVTTVTRLLSPKTRRLLEYVTLANAFLLVTSLAWLHTRFVNPKGSQGSAVSCLPAALEKAGVDPAQLHVLQIHIRQP 88
BLAST of mRNA_F-serratus_M_contig120.1593.1 vs. uniprot
Match: D8LLK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK2_ECTSI) HSP 1 Score: 154 bits (390), Expect = 4.380e-39 Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 2
Query: 203 MEQVFFRLHVRFVTTVTRLLSPKVRRVLEYVTLGNAFCLLLSLAWLHTRFVNPKGK-GSAVSCLPAALERAGVDPAQIHVLQIHLRRP 463
MEQVFFRLHVRFVTTVTRLLSPK RR+LEYVTL NAF L+ SLAWLHTRFVNPKG+ GSAVSCLPAALE+AGVDPAQ+HVLQIH+R+P
Sbjct: 1 MEQVFFRLHVRFVTTVTRLLSPKTRRLLEYVTLANAFLLVTSLAWLHTRFVNPKGRQGSAVSCLPAALEKAGVDPAQLHVLQIHIRQP 88
BLAST of mRNA_F-serratus_M_contig120.1593.1 vs. uniprot
Match: A0A7S2WVH7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVH7_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 4.420e-7 Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 2
Query: 203 MEQVFFRLHVRFVTTVTRLLSPKVRRVLEYVTLGNAFCLLLSLAWLHTRFVNPKGKGSAVSCLPAALE-RAGVDPAQIHVLQIHLRRP 463
MEQVFFRLHVR V T+TR SP RRV+EY L + L + LHTR + P+ G +P ++ + ++ Q+ +++I RP
Sbjct: 1 MEQVFFRLHVRCVRTITRACSPTFRRVVEYGLLALSVGLCSLVVALHTRHIAPRDGGCLQGLVPDPVDPMSSLNETQLLLIRILEPRP 88
BLAST of mRNA_F-serratus_M_contig120.1593.1 vs. uniprot
Match: A0A1D6GL22_MAIZE (Uncharacterized protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6GL22_MAIZE) HSP 1 Score: 52.4 bits (124), Expect = 6.280e-5 Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 2
Query: 206 EQVFFRLHVRFVTTVTRLLSPKVRRVLEYVTLGNAFCLLLSLAWLHTRFVNPKGKGSAVSCLPAALERAGVDPAQIHVLQIHL 454
EQ F R+H R T+++LL+P++R VLEY+ L A L L +HT FV G S E +G++ + ++QI +
Sbjct: 4 EQTFLRVHARLSGTLSQLLTPRIRLVLEYLYLAGAVALFCLLVVMHTNFVQQPGCSS---------EFSGIEFGEAQLVQIKI 77
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 152.1 |
| Seed ortholog evalue | 2.6e-34 |
| Seed eggNOG ortholog | 2880.D8LLK2 |
| Preferred name | TMEM259 |
| Hectar predicted targeting category | mitochondrion |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0008150,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0010941,GO:0012505,GO:0019222,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0032268,GO:0032270,GO:0033554,GO:0034976,GO:0042176,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0060255,GO:0060548,GO:0061136,GO:0065007,GO:0080090,GO:0080134,GO:0080135,GO:1901214,GO:1901215,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904292,GO:1904294,GO:1905897,GO:1905898 |
| EggNOG free text desc. | positive regulation of ERAD pathway |
| EggNOG OGs | KOG2092@1,KOG2092@2759 |
| Ec32 ortholog description | Membralin |
| Ec32 ortholog | Ec-04_005490.1 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 4 |
| Model size | 776 |
| Cds size | 573 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929111.5194798-UTR-F-serratus_M_contig120:601722..601924 | 1622929111.5194798-UTR-F-serratus_M_contig120:601722..601924 | Fucus serratus male | UTR | F-serratus_M_contig120 601723..601924 + |
| 1690962710.1094265-UTR-F-serratus_M_contig120:601722..601924 | 1690962710.1094265-UTR-F-serratus_M_contig120:601722..601924 | Fucus serratus male | UTR | F-serratus_M_contig120 601723..601924 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929111.5299988-CDS-F-serratus_M_contig120:601924..601933 | 1622929111.5299988-CDS-F-serratus_M_contig120:601924..601933 | Fucus serratus male | CDS | F-serratus_M_contig120 601925..601933 + |
| 1690962710.1212966-CDS-F-serratus_M_contig120:601924..601933 | 1690962710.1212966-CDS-F-serratus_M_contig120:601924..601933 | Fucus serratus male | CDS | F-serratus_M_contig120 601925..601933 + |
| 1622929111.5393677-CDS-F-serratus_M_contig120:602292..602352 | 1622929111.5393677-CDS-F-serratus_M_contig120:602292..602352 | Fucus serratus male | CDS | F-serratus_M_contig120 602293..602352 + |
| 1690962710.1288362-CDS-F-serratus_M_contig120:602292..602352 | 1690962710.1288362-CDS-F-serratus_M_contig120:602292..602352 | Fucus serratus male | CDS | F-serratus_M_contig120 602293..602352 + |
| 1622929111.5529227-CDS-F-serratus_M_contig120:606176..606350 | 1622929111.5529227-CDS-F-serratus_M_contig120:606176..606350 | Fucus serratus male | CDS | F-serratus_M_contig120 606177..606350 + |
| 1690962710.1363752-CDS-F-serratus_M_contig120:606176..606350 | 1690962710.1363752-CDS-F-serratus_M_contig120:606176..606350 | Fucus serratus male | CDS | F-serratus_M_contig120 606177..606350 + |
| 1622929111.5639157-CDS-F-serratus_M_contig120:606564..606894 | 1622929111.5639157-CDS-F-serratus_M_contig120:606564..606894 | Fucus serratus male | CDS | F-serratus_M_contig120 606565..606894 + |
| 1690962710.1437452-CDS-F-serratus_M_contig120:606564..606894 | 1690962710.1437452-CDS-F-serratus_M_contig120:606564..606894 | Fucus serratus male | CDS | F-serratus_M_contig120 606565..606894 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig120.1593.1 >prot_F-serratus_M_contig120.1593.1 ID=prot_F-serratus_M_contig120.1593.1|Name=mRNA_F-serratus_M_contig120.1593.1|organism=Fucus serratus male|type=polypeptide|length=191bp
MEQVFFRLHVRFVTTVTRLLSPKVRRVLEYVTLGNAFCLLLSLAWLHTRF VNPKGKGSAVSCLPAALERAGVDPAQIHVLQIHLRRPPDDRGGGGKSNRN GSGNSGGEGASRRCVHRGGGGSGGQKGKETKASSPPLLSLSLSLPDGGSA GSSDQGGDVNFGQGGGSRGASAGDEEERSSVGAGAGEIFHG back to topmRNA from alignment at F-serratus_M_contig120:601723..606894+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig120.1593.1 ID=mRNA_F-serratus_M_contig120.1593.1|Name=mRNA_F-serratus_M_contig120.1593.1|organism=Fucus serratus male|type=mRNA|length=5172bp|location=Sequence derived from alignment at F-serratus_M_contig120:601723..606894+ (Fucus serratus male) AAACCGTATTTATGTACTTACATTCCGCTTCAAGATCTATACGAACACCA
TCTACTTCAAAGTGCACTCTGTATTTTGAAGTACAAGTTCCCGTTGCATT
TCATGGAAAGGTTAGAAACATCTTGCGCTGCACTTTCAAAGAGAAGCCTT
ATAGTCTGAGACCCTGGTGAAGGAGAGGAGTGGTGAATCAGGCAGGATCG
TCATGGAGCAGGTTAGGTAACTCTGCTTTGATTTTTCTATTCTTGTGTGT
CCCTTTATTTCGTTTACGAACAAACTTCGGCGTAGGCGAAAATACGCCTT
CAGTTTTGTACACCTATAATAAGTAGTACACAGAGCACAGGCACATACCG
GAGTACCGGTACGTATGAACTTGATACTGCTGTAAGTTACAGAACGCGGA
GTACACAGTACGCCAATAGCCCCGCATTGCCGCAGAAAGCCTCCTCTTCT
TCTGTCATTGATGGTCGCCAAGCCTACGCAGTTCGCCAAAACAATGCACT
ACGTTTCTCTTCCGCACCTCTTACTCTCTTTAATCTTTGTCCTGACTGGG
CGATCGTGCTTCGTTCTCAGGTGTTTTTTCGTCTGCACGTGAGATTTGTC
ACGACGGTAACGCGTCTCCTGTCACCCAAGGTAAGAAAATAACAGATTTT
TCTTGTAAACACCACACCGTAAGTGTACATGTTGAACTATTAGTAGAGCT
ATGGCGTCACATCTTTAGTCGTCTCCTTACAGAAAAATCCGAACACATTC
AAACCTTGCGGGAGTGTTATTACCGGTGCTTTTTCCCTGCCCATATTTTC
CATGCACAGCTGATACAGCCATGACCTGATGATTAATTACCATTAGTCTT
CTAGTGTTATCTTAGTTCAGTATCTGCTGGTGGTGCATTGGAAATCGAAT
TGCGATGTTGTGTTTCGTCAAAATGCAGTTTGCTGCCAGTATCTAAACCT
CGTACCGTATTTCACATGAATATCTTGACGGAAAGCGGGGGGATTCTATC
AGCAGGATAACTATCAATAGCGGACTAGAGCTAAGCTCAGCGTGCGTTTG
TATTCTCGCCCTTGCGCCCCTTATGCTGCAGTACCGATGAGAAACCACTG
CGTTGATATGCAAATACAGCAACGCGCAGCTGTCGACGGCAATGACGGCC
TACTCCACTTTTAATCAAGCCCCACAGGTCATATCATACACATCCGCCGG
TACTTTCAACATGCCCACTTCATACCAATAGTGGGTGCGGGAAAGAGAAG
CGCATATCAATTGGTCCATGGTGACCTGCCAAGGCAGCACCCGTTTGGAA
CTACCTTGAGGTTTACTGGCCCTGTGCCGGTGGACTTTCGGCAGTGAACG
CCATTGGTACGCTCTTGCGTAACCCGATAAACTCGGGACTGACCCGATGG
CGTATGGTGGTTTCATAAATGGACGCCGCCGCGGAACTCGGGAGGAATCC
CGTAAGTAAGCACCAGATTCAGCCTGAGTATGGATAATGAGCAGGCTGAC
GCGGGACGGGACGGCTGAGCCCGTTTCGCGAGACCAAATTCTCAGGCACG
CACGGGGACAGGGGAATATTCATTTTCCCTGTTCAGCTGACCACGAGCAG
GATTGGCAACCTTACACGGTTGATCCATACTCTGCTATATGTGATGACCA
TACATACATACATAAATACACATCACTGACTGCCGCCCTATTGTGACATA
AGGCACGAAGCGCAGACAAATACATTTATTTCCACTGATTGGAGATTCCA
AATTTTTACAACCTTGGTCATACAGCATGCATCTGTAATACGCTGTTAAG
CTTGAAACAGGTACCATCTCGTCAGCTTGAATTAGGCACCATGACCATGT
TACTTACTAATTCATACAGCATGCATCTGTAATACGCTGTTAAGCTTGAA
ACAGGTACCATCTCGTCAGCTTGAATTAGCACCATGACCATGTTACTTAC
TAATTCATAACTTCTGCTCTGAAAGTACTTCCTACAGTATTTATAAGCGC
CAGGTAGATGCGAGAACGGTTACAGCCGGTAGCCGGGAGCTCTTGGGCAT
CGCATCGCATCGCTCGTTCGCGGCTCGGGCGCACGTGGGACGCGTACGCA
CGCACGATGTGCACCTCGGTGATGACGAAAGCGCCGCAGCCTCGACAAAC
CAAGTTCAGCGCTCCCGAAGTTGCTACACTATATTACACAAATTCTGAAC
AGCAGTATTCGCTAGTTGTCAGGAAGTCCTCCAGCGTTTCAGATCCATCG
GACAGCTCATCACACAACATCCAGTGTCCTCCCCTCAAAAGACGCCGTGA
ACGCGAAGCAATGAAGACCGAGCAATGACGTCGGTATGGGTGATGAAGAA
CTAGTCTACGCTCTTCTCGTACGGTTATTACTTGACTTGTGACTTATACT
GTACTACAGTACATCCGTGTCGTGAGAGAGCGTCTCGTGTTGTATAAATA
TGTTCATTATGTTGTCTGTCGCTGGTATCGTGTGGAAGGTGAAAGGGTAC
AGTACATTGTTGATTGTTAGTTATCTAAAATATCTCGGAGATGGAAGAAA
TCTCCACACACACACACACAACGTGGAAGGAAAATATGTACCGGTACGGG
TATAATCGGGACACGCACCGTTTGGGTGCTGAAAGGGGAAGGGGGCAGAA
TGATAACACCACCGCTGCAGTACGCGGCACGGTTGGATGGGGGGTCGAGA
AGTAACCCCCAGGTGGGTTACATGCAGTAGCATAGAATGAGTAGACTACA
TGGCCGGATTGCGCGGTTAGGTGCAATTTAATAAATACACACACACACAC
CCCCTCGGGAGGATCAATGCGAGTGGCATAGAATGACTAGGATGACAGGG
CCGGATTGCGTGGTTATGTGCAATTTAATAAATACACACACACACACACC
CCTCGGGAGGATCAATGCGAGTGGCATAGAATGACTAGGATGACACGGCC
GGATTGCGTGGTTATGTGCAATTTAATAAATACACACACACACACACACA
CACACACACACACACACACCGTTCCCTCCGCTTCCGCTGCTCAAGAACGC
AGACACAAAGACATTTTGTTTGTGCTGCTCGTACCACCACGTTGCAAGCT
GCATGCGGCACAAACAGTACTGTACTGCACTGCATATACTTACTGCACAT
GACAGCTTTTCAGGGGATTGAGGGCCTGCTTCGAACAGCGAAACGATTCC
ACACCCGCGATGTATTATTTTTCTTTCGGATGCTCTGAAAACACCCGACG
CGCCCGTTCTCTTCACTATTCACTATTATTAATAATATTAATATTAGGTT
ATTAATAATACTAATAATATTAGGTTTAGGGGAAGAATCCGGGGATGGGA
GGGGGCTCGCGTGACCTTGAGTTCAAGTTATACTATATATTAATAGTAGT
ACTGCACTGTACTTTACGAATAGCAGCACAAAAGCTACTATTTAGGGCAC
CAGCTCCACACGGTACTCAGCTTGTCTGTTGATTTGTTTTTTCTGGTTTA
CAGCGTTCCTCATTTGGCGTCGGCCAGAAACAAAACCCCGCTTCTTGCTG
TCAAGGTGATGACCTCCACGGTAATAACATTGTTAATAATGTTAATTTTA
CACTGTAGTCTATTAGAGCTAAAGTTACACATCGCAGTGTGCCTTTCGAG
ATGTCGGGGGGCTTGGGATGGGGGAATGTGTTTGTAGCGGAAAACATAGG
ATGAGACTATCAAGGTTCACAATCAACGGTTGACGAAATTTAGGAGTATT
GAATAAAAGGCGTTGTTGTGAACCGAGGAGAGGTGGAGACATCCCCTACT
CTTTTGATTGGGCCACATGCGGGAGGAGCAGCGTTGCGGTAGGAGGGGAT
GGTGAGCTCTGTAACTCGTTCACTGGCCCCATTAGCAGCAGAAAGTGCCA
CCAAACACAACACAGACTGGACACTGCTGTGAAACCCTATAATAGCAACA
GTTGAGGAAATCGGCGACAGCTGGCTTGCGCAATTTGCTGCTACCGCGTG
TTCGAGTTCACCTGTCATAAAGATTTGGTTTGGTTCCGCCTGTTGTATAT
CTTGTGACCACGGCTGGGTTCGTAGCGGATCAGTCAATGTGAGATAAACA
GCAATAACAACAGTATGCACACGAAAGAAAAAACTGTGGGAGGCGTCAGC
GCGTGAGGGGAGGGGTGAGTTGGGCGGGAAGGGCAACGTCGTATTGGATC
TATATGGCGGAGCTCTGGGACGTCTTATTTTACCCTGGAGAAGAGTCATC
TGTATGTAACAAACAGTCAAACAGAGCGAACGCGTTGTAAGAAGCAGCTG
TCCACTACATGTGGCTCCGAATATTCGTCACTGCTCCATATCAAGCTACC
CCTTTCACCCCCTACCACACACGCGTCTTCTCACCAACAAATCATGCTAA
CCATACATCACCTGCTTCATGTCCTCCTTTTCCTCTTTCGCTTGTGTGGG
TCAGGTCCGACGCGTGCTGGAGTACGTAACTCTGGGGAACGCCTTCTGCC
TCCTGCTGTCGCTGGCGTGGCTGCACACTCGTTTCGTCAACCCCAAGGGG
AAAGGGTCGGCTGTCTCGTGCCTTCCCGCTGCGTTGGAGCGAGCCGGCGT
CGACCCTGCGCAGATTCACGTTCTTCAGGTCGGTGGCCGCGTCGCTCGCT
ACCGATGCTTGCGTGATGCTTGCGTGTGTTCGGTAACTTTTTGATCACCG
CGCGGGGTTTGGTGGAGGAAAGGAAAAAAGGAGGGAGGGGACGGAATATT
CGAGTAGACTGAGCTCTCAAGGTTACAAAAGTTGAACGAATTGGAACGGA
ACACGCTCCATCTTGTGCCCTCTGCTCCGCCGCCCAAAGCAGATACATTT
ACGACGGCCTCCCGATGATCGAGGCGGTGGTGGCAAAAGCAATCGTAATG
GCAGCGGCAATAGCGGTGGCGAGGGTGCCAGTCGTAGATGCGTCCACCGA
GGGGGGGGCGGTAGCGGGGGGCAAAAAGGAAAAGAAACGAAAGCCTCGTC
GCCACCGTTGTTGTCGTTATCGCTATCCCTGCCGGATGGTGGAAGCGCGG
GCAGCAGCGATCAAGGCGGAGATGTTAACTTCGGGCAGGGCGGTGGCAGC
AGGGGTGCTTCCGCCGGCGATGAAGAGGAGAGGTCGAGTGTAGGGGCAGG
GGCAGGGGAAATCTTCCATGGC back to topCoding sequence (CDS) from alignment at F-serratus_M_contig120:601723..606894+ >mRNA_F-serratus_M_contig120.1593.1 ID=mRNA_F-serratus_M_contig120.1593.1|Name=mRNA_F-serratus_M_contig120.1593.1|organism=Fucus serratus male|type=CDS|length=1146bp|location=Sequence derived from alignment at F-serratus_M_contig120:601723..606894+ (Fucus serratus male) ATGGAGCAGATGGAGCAGGTGTTTTTTCGTCTGCACGTGAGATTTGTCAC GACGGTAACGCGTCTCCTGTCACCCAAGGTGTTTTTTCGTCTGCACGTGA GATTTGTCACGACGGTAACGCGTCTCCTGTCACCCAAGGTCCGACGCGTG CTGGAGTACGTAACTCTGGGGAACGCCTTCTGCCTCCTGCTGTCGCTGGC GTGGCTGCACACTCGTTTCGTCAACCCCAAGGGGAAAGGGTCGGCTGTCT CGTGCCTTCCCGCTGCGTTGGAGCGAGCCGGCGTCGACCCTGCGCAGATT CACGTTCTTCAGGTCCGACGCGTGCTGGAGTACGTAACTCTGGGGAACGC CTTCTGCCTCCTGCTGTCGCTGGCGTGGCTGCACACTCGTTTCGTCAACC CCAAGGGGAAAGGGTCGGCTGTCTCGTGCCTTCCCGCTGCGTTGGAGCGA GCCGGCGTCGACCCTGCGCAGATTCACGTTCTTCAGATACATTTACGACG GCCTCCCGATGATCGAGGCGGTGGTGGCAAAAGCAATCGTAATGGCAGCG GCAATAGCGGTGGCGAGGGTGCCAGTCGTAGATGCGTCCACCGAGGGGGG GGCGGTAGCGGGGGGCAAAAAGGAAAAGAAACGAAAGCCTCGTCGCCACC GTTGTTGTCGTTATCGCTATCCCTGCCGGATGGTGGAAGCGCGGGCAGCA GCGATCAAGGCGGAGATGTTAACTTCGGGCAGGGCGGTGGCAGCAGGGGT GCTTCCGCCGGCGATGAAGAGGAGAGGTCGAGTGTAGGGGCAGGGGCAGG GGAAATCTTCCATGGCATACATTTACGACGGCCTCCCGATGATCGAGGCG GTGGTGGCAAAAGCAATCGTAATGGCAGCGGCAATAGCGGTGGCGAGGGT GCCAGTCGTAGATGCGTCCACCGAGGGGGGGGCGGTAGCGGGGGGCAAAA AGGAAAAGAAACGAAAGCCTCGTCGCCACCGTTGTTGTCGTTATCGCTAT CCCTGCCGGATGGTGGAAGCGCGGGCAGCAGCGATCAAGGCGGAGATGTT AACTTCGGGCAGGGCGGTGGCAGCAGGGGTGCTTCCGCCGGCGATGAAGA GGAGAGGTCGAGTGTAGGGGCAGGGGCAGGGGAAATCTTCCATGGC back to top
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