mRNA_F-serratus_M_contig12.1547.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig12.1547.1
Unique NamemRNA_F-serratus_M_contig12.1547.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig12.1547.1 vs. uniprot
Match: D8LFD9_ECTSI (UBP-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFD9_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 8.980e-52
Identity = 122/197 (61.93%), Postives = 156/197 (79.19%), Query Frame = 3 
Query:   39 MKVAVVSREYEALVASQLEEQQRYFECLIASAVAAEAEANSPTEERLSSEERVELAALRREVEGLSGKHESVLESVRVAEETARRARTENRSLESEQRSHQREVARLKEETSETNRRCERQMADLEGQMQDLLFFLKAQQEVKSSPQREELVGGSVVMGE----RTGSDGGRRAGPSRGSEKEKLARRLKEFSNARR 617
            +K+AVVSREYEALVA QL+EQQRYFE LIA+AVA +AEAN+P EE L+ EER E+  LR+ ++ LSGK+E +L+S+R  EETARR R+ENR L SEQRS +RE  RL EE  +T R+CE+QM++LEGQMQDLLFFLK Q++VKSSP+R+E+VGGSVVM E          GR  G ++ +E+E+LARRLKE S++RR
Sbjct:  806 LKMAVVSREYEALVARQLQEQQRYFEDLIATAVAVDAEANAPVEEVLTDEERAEVGKLRQAIDELSGKYEGILDSLRTDEETARRVRSENRGLVSEQRSQKREEGRLAEEARQTRRQCEQQMSELEGQMQDLLFFLKTQEKVKSSPRRQEIVGGSVVMEEGXXXXXXXXXGR--GGAKETERERLARRLKERSHSRR 1000
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BLAST of mRNA_F-serratus_M_contig12.1547.1 vs. uniprot
Match: A0A835YX21_9STRA (UBP-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX21_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.180e-7
Identity = 50/153 (32.68%), Postives = 76/153 (49.67%), Query Frame = 3 
Query:   42 KVAVVSREYEALVASQLEEQQRYFECLIASAVAAEAEANSPTEERLSSEERVELAALRREVEGLSGKHESVLESVRVAEETARRARTENRSLESEQRSHQREVARLKEETSETNRRCERQMADLEGQMQDLLFFLKAQQEVKSSPQREELVGG 500
            K+  V+REY+ L+A+QL+EQQ                                ++ LR +V  L  + +++L  +R A+E  R     N +L  EQR  + EV RL+ E +     CE  +ADLE Q+ DL F++KAQ +V+ S  R +L GG
Sbjct:  542 KLWAVAREYDTLLATQLDEQQ--------------------------------VSQLREDVHTLEERRDALLSELRSAQEECRLLHAGNSTLMHEQREAKAEVGRLRAEAARERASCETMVADLEQQVSDLTFYIKAQAKVQQSKHRADLEGG 662
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BLAST of mRNA_F-serratus_M_contig12.1547.1 vs. uniprot
Match: A0A7R9U8V5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8V5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.780e-7
Identity = 52/161 (32.30%), Postives = 87/161 (54.04%), Query Frame = 3 
Query:   33 DLMKVAVVSREYEALVASQLEEQQRYFECLIASAVAAEAEANSPTEERLSSEERVELAALRREVEGLSGKHESVLESVRVAEETARRARTENRSLESEQRSHQREVARLKEETSETNRRCERQMADLEGQMQDLLFFLKAQQEVKSSPQREELVGGSVVMG 515
            D  K+  V+  Y+ L+ SQLEEQ+RY+E LIA+    +  AN+   E     E  +L+ +R  V       +  +E VR   E     R ENR L   + S +  V + +   +E  +  + ++ DL+ Q++DL F++KAQ +V + P R+E+  G+V++G
Sbjct:  385 DRTKLNDVAHSYDKLMESQLEEQRRYYEDLIAAETLVDV-ANADWTEG----EAKDLSEMRDSVAQSQANLDLAMERVRAKTEEIEEVREENRRLLENEESLRNAVIQFQGRRTEVRQAIDVKLQDLQAQVEDLAFYVKAQMKVDADPNRDEVREGAVLVG 540
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BLAST of mRNA_F-serratus_M_contig12.1547.1 vs. uniprot
Match: A0A7S2SSI1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSI1_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.110e-6
Identity = 52/171 (30.41%), Postives = 92/171 (53.80%), Query Frame = 3 
Query:   21 GQQPDL--MKVAVVSREYEALVASQLEEQQRYFECLIASAVA---AEAEANSPTEERLSSEERVELAALRREVEGLSGKHESVLESVRVAEETARRARTENRSLESEQRSHQREVARLKEETSETNRRCERQMADLEGQMQDLLFFLKAQQEVKSSPQREELVGGSVVMGE 518
            G++ DL  +K++ ++ EYE L+ SQLEEQ+RYFE L+A   A   + A AN+     +S+E + ++  L+  + G   +H +++  +R  E T R+ R                        S+  + C+  + +L+ Q+ +L F+L+ Q +V  SPQ++EL  G V++GE
Sbjct:   18 GEEQDLVALKLSGLTSEYEHLLLSQLEEQRRYFEQLLAKEEAEMLSAAVANAD----MSAELQEQIDVLKTSILGREEEHRTIMARLREDEATLRQERXXXXXXXXXXXXXXXXXXXXXXXVSQEAKSCDEHVEELKQQIMELSFYLRTQHKVTQSPQKQELQQGHVLVGE 184
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig12.1547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LFD9_ECTSI8.980e-5261.93UBP-type domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YX21_9STRA1.180e-732.68UBP-type domain-containing protein n=1 Tax=Tribone... [more]
A0A7R9U8V5_9STRA1.780e-732.30Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2SSI1_9STRA1.110e-630.41Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig12contigF-serratus_M_contig12:723366..726302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.1
Seed ortholog evalue1.6e-50
Seed eggNOG ortholog2880.D8LFD9
KEGG koko:K00413,ko:K10632,ko:K11407
KEGG Pathwayko00190,ko01100,ko02020,ko04014,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,ko05034,ko05165,ko05203,map00190,map01100,map02020,map04014,map04260,map04714,map04932,map05010,map05012,map05016,map05034,map05165,map05203
KEGG ModuleM00151,M00152
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000165,GO:0003674,GO:0003824,GO:0004842,GO:0005048,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005829,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0008139,GO:0008150,GO:0008152,GO:0008270,GO:0009636,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010646,GO:0010648,GO:0012505,GO:0016020,GO:0016310,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0031090,GO:0031965,GO:0031967,GO:0031975,GO:0032182,GO:0032446,GO:0032991,GO:0033218,GO:0035556,GO:0036211,GO:0042221,GO:0042277,GO:0042493,GO:0042802,GO:0043130,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045471,GO:0046677,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0097305,GO:0140096,GO:1901564,GO:1901700,GO:1902494,GO:1990234
EggNOG free text desc.nuclear localization sequence binding
EggNOG OGsKOG0804@1,KOG0804@2759
EC2.3.2.27,3.5.1.98
COG Functional cat.GO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03019,ko03036,ko04121,ko04131
Exons4
Model size1523
Cds size603
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig12.1547.1prot_F-serratus_M_contig12.1547.1Fucus serratus malepolypeptideF-serratus_M_contig12 724248..726264 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.4233305-UTR-F-serratus_M_contig12:723365..7242471622929105.4233305-UTR-F-serratus_M_contig12:723365..724247Fucus serratus maleUTRF-serratus_M_contig12 723366..724247 -
1690962707.1987817-UTR-F-serratus_M_contig12:723365..7242471690962707.1987817-UTR-F-serratus_M_contig12:723365..724247Fucus serratus maleUTRF-serratus_M_contig12 723366..724247 -
1622929105.5144794-UTR-F-serratus_M_contig12:726264..7263021622929105.5144794-UTR-F-serratus_M_contig12:726264..726302Fucus serratus maleUTRF-serratus_M_contig12 726265..726302 -
1690962707.2389984-UTR-F-serratus_M_contig12:726264..7263021690962707.2389984-UTR-F-serratus_M_contig12:726264..726302Fucus serratus maleUTRF-serratus_M_contig12 726265..726302 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.4410343-CDS-F-serratus_M_contig12:724247..7244271622929105.4410343-CDS-F-serratus_M_contig12:724247..724427Fucus serratus maleCDSF-serratus_M_contig12 724248..724427 -
1690962707.2090755-CDS-F-serratus_M_contig12:724247..7244271690962707.2090755-CDS-F-serratus_M_contig12:724247..724427Fucus serratus maleCDSF-serratus_M_contig12 724248..724427 -
1622929105.4597626-CDS-F-serratus_M_contig12:724629..7248121622929105.4597626-CDS-F-serratus_M_contig12:724629..724812Fucus serratus maleCDSF-serratus_M_contig12 724630..724812 -
1690962707.2167609-CDS-F-serratus_M_contig12:724629..7248121690962707.2167609-CDS-F-serratus_M_contig12:724629..724812Fucus serratus maleCDSF-serratus_M_contig12 724630..724812 -
1622929105.4775348-CDS-F-serratus_M_contig12:725403..7255751622929105.4775348-CDS-F-serratus_M_contig12:725403..725575Fucus serratus maleCDSF-serratus_M_contig12 725404..725575 -
1690962707.2242525-CDS-F-serratus_M_contig12:725403..7255751690962707.2242525-CDS-F-serratus_M_contig12:725403..725575Fucus serratus maleCDSF-serratus_M_contig12 725404..725575 -
1622929105.4953663-CDS-F-serratus_M_contig12:726196..7262641622929105.4953663-CDS-F-serratus_M_contig12:726196..726264Fucus serratus maleCDSF-serratus_M_contig12 726197..726264 -
1690962707.2317605-CDS-F-serratus_M_contig12:726196..7262641690962707.2317605-CDS-F-serratus_M_contig12:726196..726264Fucus serratus maleCDSF-serratus_M_contig12 726197..726264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig12.1547.1

>prot_F-serratus_M_contig12.1547.1 ID=prot_F-serratus_M_contig12.1547.1|Name=mRNA_F-serratus_M_contig12.1547.1|organism=Fucus serratus male|type=polypeptide|length=201bp
MKVAVVSREYEALVASQLEEQQRYFECLIASAVAAEAEANSPTEERLSSE
ERVELAALRREVEGLSGKHESVLESVRVAEETARRARTENRSLESEQRSH
QREVARLKEETSETNRRCERQMADLEGQMQDLLFFLKAQQEVKSSPQREE
LVGGSVVMGERTGSDGGRRAGPSRGSEKEKLARRLKEFSNARRGSKMQLR
*
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mRNA from alignment at F-serratus_M_contig12:723366..726302-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig12.1547.1 ID=mRNA_F-serratus_M_contig12.1547.1|Name=mRNA_F-serratus_M_contig12.1547.1|organism=Fucus serratus male|type=mRNA|length=2937bp|location=Sequence derived from alignment at F-serratus_M_contig12:723366..726302- (Fucus serratus male)
AGGCAGTGGGGGAGAGTCAAGGGCAGCAACCGGACTTGATGAAGGTGGCT
GTCGTGTCTCGAGAGTACGAGGCGCTCGTCGCCAGTCAGCTGGAGGAGCA
GCAAAGGTGAAACTTAACGTTGCGGGCCTTGTTAGGGGGTGCAGGATGCC
CTTCGTATCGTGATAATGCCGCGCTTGCGTCCCTTCGGTGGGCATCCAAG
CGTATCTTGTGTCTAAAACCATAGAGCTACGTGTGCGTCCGGTTGTCTCG
CGCTCTTTCACGACAATACTCACTTGGTTGTACTATTGAGGTAATCAGTA
GGTTGCCCAGCCCCGGTCGAGGCGTATAGATGCAGAGATGGGTCCATCCT
AGAGTGCTCATTTGCCAACACAACTATTCTTATCTTTCGGTCGTTGCATA
CTTACTTGAAGTCGTTTTAGAACGCGCCCTTCTCACCCCTTAGGGATTAA
AAAACGCCTCCCCTCTTCTTCTCTTCAAGAGTATGATATAGATGAAGAAT
ATGCAGTTCAATGGCGTGATCTTTCTTAAAAAAGATACACTCCTCCGCGC
CTGTAACCTCCACCTCCCTGTTGCTGACACGATTGGCGGGAAAACTGTCG
TCTCCCACAATCAGTGAACGTTCCTTTTCCACCATACCGCATTCACGAGG
CTCTTGAGCCTCTCTTGAGCCTCTCTTGAACCTCGACCATCTACCCGCGT
TGCTGCTGGCATTCTCCCTCGTGGCAGATACTTTGAGTGTCTCATAGCTT
CGGCTGTAGCCGCGGAGGCGGAGGCCAACTCCCCAACGGAAGAGCGCCTC
AGCAGCGAGGAACGCGTCGAGCTTGCCGCGTTGCGGCGAGAGGTGGAAGG
GCTCTCCGGTAAGCACGAGAGCGTCCTGGAGAGCGTACGAGTCGCTGAGG
TGAGTGCGCGATCTTGCGGTTCGATTGCTGCGAGTGCGTAGAATGTCTGA
TGCTCTCGGATGTAGGGTATTTGCTTCGGGGGTGCCAATTCGGTACAGGG
TGGAAATATATCGGAAGGGAGGCTCGCCTTAGGGGTGGTGAGGCTGATAC
CGTCACGGTATTCGTTGGTTACGGTAGTCCTTGAAAGGGTTATCCCGGAA
AAGATGCGAGGCTTTCGGTGAGTTTGTTTGATCAAACGGCAGAAGTTGAC
TTTACGGTTTCGGGCACGGCTGGTCCGTTGCTGCGCTCGCCTGTAGCGCC
CCTTGGCGCTAGCTGTGGCACTGGGATTTTGGTACCTCGCAGGTTGGCTG
GGGTCTAAGGGTGAGTTAGGGTGAGGGTTAGATTCGGGTCGTGCATCGCG
AAAAAGACAGTGGGAGGACGCGTAAGTTAAACCTTTTCCCGCCTCCTCGT
CCTTGTCGCCACTTCTGGTGTGTAATGTAATATAATGAGTAATAGTGAAC
TAAAACCGCTAGAAATGGTACTGGAACATAGCCGATATTTCCTTGCACCC
TTCATCCTACGACCGCTTGTTTCGGTGACGTATGTCCTAGGAGACCGCTC
GGCGCGCACGAACAGAAAACCGTTCGTTGGAGTCGGAGCAGCGCAGTCAT
CAGCGGGAGGTAGCTCGGCTGAAGGAAGAGACCTCGGAGACCAACCGGAG
GTGTGAGAGGCAGATGGCGGACCTTGAGGGCCAGATGCAAGACCTCCTGT
TCTTCCTGAAGGCGCAGCAAGAGGTAAGATGTGCTGGTACATTATACCGT
ATATATATATATATATATTCATTTTTTTTCCAAGAGTGCATGGATTCGCT
TGGTTCGTCAGCCGCTTTCCCGGCCACATCTTATATAACCACTCAGTAGG
TTAAAGAGGTTCCATGTTTTGATCGAATTTTGAGGCTTACTTTACAGGAC
CGCGTGGACGGATTTGGAACGTCAGGTGAAATCGAGCCCTCAGCGCGAGG
AGCTGGTCGGGGGATCAGTCGTCATGGGGGAGAGAACGGGTTCAGATGGA
GGGAGGAGGGCGGGGCCGTCTAGGGGGAGCGAGAAGGAGAAGCTCGCGCG
GCGCCTCAAGGAGTTTAGCAACGCTCGGAGGGGGTCCAAAATGCAGCTCC
GTTAGATGGAGGACCTACATGTTTACTGTACAGGCACACCATATCCATTC
GTAGACGCACTCTCTATGAGCGTGATTTGCCTTCAGATGTCGCCCTATAC
CGGGTGGTTTGACTAGGAGATTTCGCTAAGGCGTTGTGGCTTGACATCCT
TTGTGATGTTGTGATAGAATCCCGCTAAATACTCTACCGGTAGCGTTCTA
TATATTTTTGTGTTGAGATTTGGTATCCTCAGCTTTCGACGTTCGCCTTA
GCCCATCAAGCGGACGATCCAGCCGTAAATCGTTTTTCGGGTACAGTAAT
TTTAAATAAACCTCTCAGTTCACCTCAGATTCTCGCTAGCGCCGAATCCA
CCAAGCCATGCGCTCTAGGAGGATGTTATCATTGATCGATTATCAAGCGC
ACGCACTTGGATGGCCTACTGGTACACACGCTGAGACAGCATCCGGTACA
GAAGGGCACGCCTCACTGGGGTCTATTACTAGCTAGAGCTATAAAAATAG
CTAGAGCTACGGAAATACACCGCGCTGACGTTTGGCCGCGAGCTGACATC
TTAGAAGTTACCAGGTAAAAATAATGTTCCGAATGTTCGAGCACGTTTTT
TGCTACATCGTACATCGTTCCCAACATTGCTACAGGTAAGAGGTGCATAT
AGCCTGTAGTGTCTCGCGCGTCTGCAGTGCCTTTCGATCCCTTTCGATTA
GAGCTACGGTTTATATAGCTGTGCGTATGCCGGGAAGGGCATTGGCGAGG
TGTAATCAAATACTTGGCGATTTTGTTGGACAGCTTGGTCCATTTTCCTT
TTCCCCGGAGGCAAATGTTTTTTTTTTACTTTTCGCCTTCGCTGTACCTC
GTAGAATTTGTATTATTATTACTGGTATCATTAATGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig12:723366..726302-

>mRNA_F-serratus_M_contig12.1547.1 ID=mRNA_F-serratus_M_contig12.1547.1|Name=mRNA_F-serratus_M_contig12.1547.1|organism=Fucus serratus male|type=CDS|length=1206bp|location=Sequence derived from alignment at F-serratus_M_contig12:723366..726302- (Fucus serratus male)
ATGAAGGTGGCTGTCGTGTCTCGAGAGTACGAGGCGCTCGTCGCCAGTCA
GCTGGAGGAGCAGCAAAGATGAAGGTGGCTGTCGTGTCTCGAGAGTACGA
GGCGCTCGTCGCCAGTCAGCTGGAGGAGCAGCAAAGATACTTTGAGTGTC
TCATAGCTTCGGCTGTAGCCGCGGAGGCGGAGGCCAACTCCCCAACGGAA
GAGCGCCTCAGCAGCGAGGAACGCGTCGAGCTTGCCGCGTTGCGGCGAGA
GGTGGAAGGGCTCTCCGGTAAGCACGAGAGCGTCCTGGAGAGCGTACGAG
TCGCTGAGATACTTTGAGTGTCTCATAGCTTCGGCTGTAGCCGCGGAGGC
GGAGGCCAACTCCCCAACGGAAGAGCGCCTCAGCAGCGAGGAACGCGTCG
AGCTTGCCGCGTTGCGGCGAGAGGTGGAAGGGCTCTCCGGTAAGCACGAG
AGCGTCCTGGAGAGCGTACGAGTCGCTGAGGAGACCGCTCGGCGCGCACG
AACAGAAAACCGTTCGTTGGAGTCGGAGCAGCGCAGTCATCAGCGGGAGG
TAGCTCGGCTGAAGGAAGAGACCTCGGAGACCAACCGGAGGTGTGAGAGG
CAGATGGCGGACCTTGAGGGCCAGATGCAAGACCTCCTGTTCTTCCTGAA
GGCGCAGCAAGAGGAGACCGCTCGGCGCGCACGAACAGAAAACCGTTCGT
TGGAGTCGGAGCAGCGCAGTCATCAGCGGGAGGTAGCTCGGCTGAAGGAA
GAGACCTCGGAGACCAACCGGAGGTGTGAGAGGCAGATGGCGGACCTTGA
GGGCCAGATGCAAGACCTCCTGTTCTTCCTGAAGGCGCAGCAAGAGGTGA
AATCGAGCCCTCAGCGCGAGGAGCTGGTCGGGGGATCAGTCGTCATGGGG
GAGAGAACGGGTTCAGATGGAGGGAGGAGGGCGGGGCCGTCTAGGGGGAG
CGAGAAGGAGAAGCTCGCGCGGCGCCTCAAGGAGTTTAGCAACGCTCGGA
GGGGGTCCAAAATGCAGCTCCGTTAGGTGAAATCGAGCCCTCAGCGCGAG
GAGCTGGTCGGGGGATCAGTCGTCATGGGGGAGAGAACGGGTTCAGATGG
AGGGAGGAGGGCGGGGCCGTCTAGGGGGAGCGAGAAGGAGAAGCTCGCGC
GGCGCCTCAAGGAGTTTAGCAACGCTCGGAGGGGGTCCAAAATGCAGCTC
CGTTAG
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