prot_F-serratus_M_contig1197.1503.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1197.1503.1
Unique Nameprot_F-serratus_M_contig1197.1503.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length1317
Homology
BLAST of mRNA_F-serratus_M_contig1197.1503.1 vs. uniprot
Match: A0A6H5K8Q2_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Q2_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 9.670e-59
Identity = 199/502 (39.64%), Postives = 259/502 (51.59%), Query Frame = 0
Query:    1 MEPIGSINKRGEASQVERFLPPFRSRKCYICGTTTGCVIRCHSSSCKFHLHPMCGSKAGSVYMEIETMMKTGSDGKEYESVSLVARCPRHDKRKIGINHRDRKSRGLV-STADPLGVAGRTLELKDAGREDGTVLNGKVTWFDSVRSRYCVVESSSDSGTG----SGDTTKGLAHWIAADKLVEVEAVCTQTKKRERFVVKQPASAKDGVRESKSEDKTQEEGGTTSSCQEDTERAQKQADDSF---------DKSLNSE--------KNDADENSQSSSGKCCKRDELGVLGPS-EAPSSRCANFETQTRTGTPSR-CDSKTLSQEQAHAS---QVSSSGELDQTCLKMTESTSIGGATSTSAMQTGEGESDVVV-PAEEQRRKDRLPAVQIIDPGHSWRRYPTRGRKREQPDAAPD----HDLDIVPGFILSKKVRLAEQDEEGGKPSTNDPVASQNSNKLGPETASDNVPSAPEVPVGQGNDDVLSSGQTIEEQPSTEV 470
            MEPIGSIN+RG+A  VE+FLP FRSRKC++CGT+ G  IRCHS+SCKFHLHPMCGSKAGSVYMEIET MK G DG E+ESV+LVA+CPRH+K K+    R  K R  V S ADPL V G+T+E+ D  R+    L GKVTWFD  RSRYC+V S    G G    SG+  +G  HWIAA KLVE +AV      +   +   P+  K      K      E G   S  + + E  +K A DS          +K  NS+        K + +   +++ GK  + D      PS E+P+ R A    Q+R    S+  DS  L Q +A +S   ++   G      L    ++ IG A S + M   EG S     P +E  R   LP+V + +    + RYP RGR R      PD      L+ VP    +K+ R  E  E     + +    S  S+ +GP  A   V  A + P   GN D   S    + +PS EV
Sbjct:   56 MEPIGSINRRGQAGGVEQFLPSFRSRKCHVCGTSGGSAIRCHSASCKFHLHPMCGSKAGSVYMEIETTMKRGVDGTEHESVNLVAKCPRHNKSKV--YGRAGKGRSAVASAADPLSVMGKTIEITDPERDGAVALVGKVTWFDPNRSRYCIVTSRRVGGDGDSCDSGEPKEGRTHWIAAKKLVEAKAVGLHKNGKNFALEPLPSWEKHRTETDK------ESGCQGSDVKVEQEEHEKVAQDSSGLTAEERGENKEANSKDAVGLEETKTEMEHGGRTTVGKRRRPDLTDPSMPSDESPAKRTARVRLQSRQAQASQGLDSHNL-QPEAESSLSPRLQGEGSQSSAVLGFGPTSEIGDAGSCAEM---EGRSMAARHPIQEPSRL--LPSVHLAEQPDPFSRYPIRGRLRRPTTPVPDPKEPQALEDVP---RTKRQRRGEDPEHRVAVAAD--AGSGPSSSIGPGDAV--VAGACDEPT-PGNSDGAQSRLIPQARPSMEV 535          
BLAST of mRNA_F-serratus_M_contig1197.1503.1 vs. uniprot
Match: D7G8G0_ECTSI (Bromodomain and PHD finger-containing protein 1, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G0_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 1.240e-57
Identity = 116/188 (61.70%), Postives = 137/188 (72.87%), Query Frame = 0
Query:    1 MEPIGSINKRGEASQVERFLPPFRSRKCYICGTTTGCVIRCHSSSCKFHLHPMCGSKAGSVYMEIETMMKTGSDGKEYESVSLVARCPRHDKRKIGINHRDRKSRGLV-STADPLGVAGRTLELKDAGREDGTVLNGKVTWFDSVRSRYCVVESSSDSGTG----SGDTTKGLAHWIAADKLVEVEAV 183
            MEPIGSIN+RG+A  VE+FLP FRSRKC++CGT+ G  IRCHS+SCKFHLHPMCGSKAGSVYMEIET MK G DG E+ESV+LVA+CPRH+K K+    R  K R  V S ADPL V G+T+E+ D  R+    L GKVTWFD  RSRYC+V S    G G    SG+  +   HWIAA KL+E +AV
Sbjct:   72 MEPIGSINRRGQAGGVEKFLPSFRSRKCHVCGTSGGSAIRCHSASCKFHLHPMCGSKAGSVYMEIETTMKRGVDGTEHESVNLVAKCPRHNKSKV--YGRAGKGRSAVASAADPLSVMGKTIEITDPERDGAVALVGKVTWFDPNRSRYCIVTSRRVGGDGDSCDSGEPKESRTHWIAAKKLIEAKAV 257          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1197.1503.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K8Q2_9PHAE9.670e-5939.64PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D7G8G0_ECTSI1.240e-5761.70Bromodomain and PHD finger-containing protein 1, p... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 893..920
NoneNo IPR availablePFAMPF13832zf-HC5HC2H_2coord: 12..90
e-value: 8.0E-9
score: 35.7
IPR036575Transcription elongation factor S-II, central domain superfamilyGENE3D1.10.472.30coord: 1177..1287
e-value: 1.2E-9
score: 40.4
IPR036575Transcription elongation factor S-II, central domain superfamilySUPERFAMILY46942Elongation factor TFIIS domain 2coord: 1217..1281
IPR003618Transcription elongation factor S-II, central domainPFAMPF07500TFIIS_Mcoord: 1215..1280
e-value: 4.4E-8
score: 33.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 16..95
e-value: 1.3E-9
score: 40.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1197contigF-serratus_M_contig1197:122287..127054 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1197.1503.1mRNA_F-serratus_M_contig1197.1503.1Fucus serratus malemRNAF-serratus_M_contig1197 121865..127061 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1197.1503.1 ID=prot_F-serratus_M_contig1197.1503.1|Name=mRNA_F-serratus_M_contig1197.1503.1|organism=Fucus serratus male|type=polypeptide|length=1317bp
MEPIGSINKRGEASQVERFLPPFRSRKCYICGTTTGCVIRCHSSSCKFHL
HPMCGSKAGSVYMEIETMMKTGSDGKEYESVSLVARCPRHDKRKIGINHR
DRKSRGLVSTADPLGVAGRTLELKDAGREDGTVLNGKVTWFDSVRSRYCV
VESSSDSGTGSGDTTKGLAHWIAADKLVEVEAVCTQTKKRERFVVKQPAS
AKDGVRESKSEDKTQEEGGTTSSCQEDTERAQKQADDSFDKSLNSEKNDA
DENSQSSSGKCCKRDELGVLGPSEAPSSRCANFETQTRTGTPSRCDSKTL
SQEQAHASQVSSSGELDQTCLKMTESTSIGGATSTSAMQTGEGESDVVVP
AEEQRRKDRLPAVQIIDPGHSWRRYPTRGRKREQPDAAPDHDLDIVPGFI
LSKKVRLAEQDEEGGKPSTNDPVASQNSNKLGPETASDNVPSAPEVPVGQ
GNDDVLSSGQTIEEQPSTEVWDKRYGLSVTGPVEMETVSTEVRDTRGEIG
ATGPVEPDMSSTWMDNTRDKIGTAGHVEPETISTEVVDKSEIGAVRPQEP
ETSSMEMRDKRGEVGATEPVESETASTEVRDTRGEIGAAGPIEPEMSSTW
MMNKRGKIGTAGHVHVAPDTPSTEVVDKSDIGAAGPQEPETTSMEMRDKR
GEVGATEPVESETASTEVRDTRGEIGATGSIEPDMSSTWMDNTRDKIGTA
GHVEPETSSTEVVDKSKLGAAGPQEPETTSIKMRDKRGEVGATEPAESET
ASTEVRDTRGEIGAVETVEPACTEVRGKRTEMGKTEPIASEPVKDLLAPA
LRPGWPSGMALLGQVPVMRIHTFHVARGPEIKYFACGSADARSVIYDQYS
TPRLSFRFEDLEEIRASRPREQIHHVRPVTDVATSMNRDCLEWAHMENKI
RQEKRQMNEMRMNREFLEWACMENKISQEKRQMRDGSNTRHQGNPLHRGD
QHLEEQSHREKDEGAARAAESDAESDASSPPSLDDFSEMEDGEIETLTDG
RAKVMPCSPLDRNMGSVEKMARMEPEGGLVGDASRAEVEDETASGHLAGG
NSVRGGEKWSDSEDMEISSDCLSMGEEDQEETGSLISSDGEIVDEGDDPV
ANSSSDSEEALERVDMRDRTAADKRADRTKPIGPGSACVQTVNNARATVP
PGDVSEDFAWSTSAPQERMAVPAAVQKTEQPQPDDHLREIVRRNLEIRLS
AGKVEDGAIVNRNRAGLFNRIAADVEAELFQRLYREKDKGHEYKAKYKQL
LLSLGNTRNHRLVDSVLAGTTTPADLATKDAVGLLKSLNSSLNCEAVPLT
GRNGQSNRRGKMVLLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036575TFIIS_cen_dom_sf
IPR003618TFIIS_cen_dom
IPR013083Znf_RING/FYVE/PHD