prot_F-serratus_M_contig1197.1501.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1197.1501.1
Unique Nameprot_F-serratus_M_contig1197.1501.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length744
Homology
BLAST of mRNA_F-serratus_M_contig1197.1501.1 vs. uniprot
Match: A0A6H5JG03_9PHAE (BHLH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG03_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 5.440e-82
Identity = 198/380 (52.11%), Postives = 238/380 (62.63%), Query Frame = 0
Query:  254 ASGLGLWGWCFP--TTIMPAGVT--APPGVGV-MGAGGTGEIIHGVGLRGGSGVVGGDGRSRQS--------GGREPPFFTPN-EDMVPLGPPKPP--ARVWDKSAVGGVAHGMKGGTGVEGVGGFGGGRCVGGQGVKDESSPRTAGMRATEMGGGVAGAGLRTGAKGELCSTASDASEMKRQERNAREQRRSLMTSQQIDKLRLILQEDGIDTKANKCSVLSEVVGYVTQLEQGLQDLEAERQTWLRETADAPEVARQGPNGGSIDCKQVLSNESVALAMATVEGRLMEGNLKFKSLSGYGDEELKRLTLLKLTAAPDLEETCEGLSAMLTDGTGKAPEQVTANAVLKEKDTKLRISVSLVRDALGRPKFFLCTLLSNT 617
            A+GLGLWGWCFP  T IM AGV   AP   G   GA   G I+ GV    G G VG       S        G ++ P   P  +  +  G  +PP  A  W     GGV+     G GV    G      V G GV +  +   +G   TE   G  G+G              + SE+KRQERNAREQRRSLMTS+QIDKLR +LQE GI TKANK SVLSEV  Y  QL+Q ++ LE ER  W+ ET+D PEV RQ PNGG+IDCKQV ++ SVALAMATVEGRL+E NL+F++LSG+ +EELK+LTLL LTA  +L+ET + LSAMLTDGTGKAPE V + AVLK KD  L +S++LVRDALGRPK+FLC+LL NT
Sbjct:   36 ATGLGLWGWCFPSPTPIMGAGVEGRAPISAGAGXGARAGGTILAGV---PGLGSVGNFQALATSPAATLAAAGPQQYPRPMPRGQQFLEPGDVRPPNVAGAW-----GGVSRINNAGGGVSSSEGE-----VAGLGVGELGAAAHSG--GTEQQEGSVGSGXXXXXXXXXXX---NPSELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETFQRLSAMLTDGTGKAPEHVLSKAVLKNKDQDLSLSLTLVRDALGRPKYFLCSLLPNT 397          
BLAST of mRNA_F-serratus_M_contig1197.1501.1 vs. uniprot
Match: D7G8G2_ECTSI (BHLH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G2_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 6.450e-53
Identity = 155/361 (42.94%), Postives = 185/361 (51.25%), Query Frame = 0
Query:  227 PFSSHPSAMIATAS---CVASDSYNALGN----PASGLGLWGWCFP--TTIMPAGVTAPPGVGVMGAGGTGEIIHGVGLRGGSGVVGGDGRSRQSGGREPPFFTPNEDMVPLGP---PKPPARVWDKSAVGGVAHGMKGGT--GVEGVGGFGGGRCVGGQGVKDESSPRTAGMRATEMGGGVAGAGLRTGAKGELCSTASDA-------------SEMKRQERNAREQRRSLMTSQQIDKLRLILQEDGIDTKANKCSVLSEVVGYVTQLEQGLQDLEAERQTWLRETADAPEVARQGPNGGSIDCKQVLSNESVALAMATVEGRLMEGNLKFKSLSGYGDEELKRLTLLKLTAAPDLEET 560
            PF SH    +  AS   C  S + N   +     A+GLGLWGWCFP  T IM AGV                       R G  ++ G       G  +    TP       GP   P+P  R       G V      G   GV GV   GGG           S    AG+   E+G   A                                SE+KRQERNAREQRRSLMTS+QIDKLR +LQE GI TKANK SVLSEV  Y  QL+Q ++ LE ER  W+ ET+D PEV RQ PNGG+IDCKQV ++ SVALAMATVEGRL+E NL+F++LSG+ +EELK+LTLL LTA  +L+ET
Sbjct:    2 PFPSHQLGALMAASGGDCGNSGTNNGYRDVAALDATGLGLWGWCFPSPTPIMGAGVEGXXXX---------XXXXXXXXRAGGTILAGVPGLGSVGNFQALAATPAAXXXXXGPQQYPRPMPRGQQFLEPGDVRPPNAAGAWGGVSGVNNAGGG--------VSSSEGDVAGLGVDELGAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQET 345          
BLAST of mRNA_F-serratus_M_contig1197.1501.1 vs. uniprot
Match: A0A4D9CZ03_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZ03_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 9.920e-13
Identity = 69/242 (28.51%), Postives = 113/242 (46.69%), Query Frame = 0
Query:  418 KRQERNAREQRRSLMTSQQIDKLRLILQEDGIDTKAN-KCSVLSEVVGYVTQLEQGL--------------------------QDLEAERQTWLRETAD-----APEVARQGPNGGSIDCKQVLSNESVALAMATVEGRLMEGNLKFKSLSGYGDEELKRLTLLKLTAAPDLEETCEGLSAMLTDGTGKAPEQ-------VTANAVLK-------EKDTKLRISVSLVRDALGRPKFFLCTL 613
            ++Q+RNAREQ+RSL  SQQI  L+ +L+E+G   K N K ++L  V  Y+ +LE+ +                            +EA  Q   R  +D     A  V         +    +    S  LA+A+VEGR ++ N++F+  +GY   EL+RLT   L A  +L++T   ++ ML   +G+  ++       +T  A+ K       ++   L I++SLV+       FF C+L
Sbjct:   28 RKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGREGGXXXXXXXXXXMDVGVGTSVEAVGQRNGRSESDLSVVTATSVREDREVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELERLTFFNLVAPEELQDTFAAVARMLNQPSGEEEDKEDSEMLRLTRRALPKVGIGGLGQQAQNLHITISLVKPQEDSMAFFQCSL 269          
BLAST of mRNA_F-serratus_M_contig1197.1501.1 vs. uniprot
Match: W7TXM2_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXM2_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 5.390e-7
Identity = 35/123 (28.46%), Postives = 63/123 (51.22%), Query Frame = 0
Query:  492 EVARQGPNGGSIDCKQVLSNESVALAMATVEGRLMEGNLKFKSLSGYGDEELKRLTLLKLTAAPDLEETCEGLSAMLTDGTGKAPEQVTANAVLKEKDTKLRISVSLVRDALGRPKFFLCTLL 614
            E     PN  S D   +  N S+A+A+A+++G+ ++ N  F  +SGY + E+ + ++  LT A D +E   G+   + +   ++ +        + +D    +S+ LVR A G P FF C +L
Sbjct:  292 EAGSWAPNKKSADYALMFQNASIAMAVASLDGKFVDCNSAFSIISGYSNGEVLQRSVFDLTPAEDCQELM-GIVGKMMESPAESAKHFWKRCCFENRDCHCFVSMWLVRKASGEPVFFQCAVL 413          
BLAST of mRNA_F-serratus_M_contig1197.1501.1 vs. uniprot
Match: I2CQP3_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQP3_NANGC)

HSP 1 Score: 57.4 bits (137), Expect = 6.660e-6
Identity = 46/153 (30.07%), Postives = 72/153 (47.06%), Query Frame = 0
Query:  475 DLEAERQTWLRETADAPEVARQGPNGGSIDCKQVLSNESVALAMATVEGRLMEGNLKFKSLSGYGDEELKRLTLLKLTAAPDLEETCEGLSAMLTDGTGKAPEQ-------VTANAVLK-------EKDTKLRISVSLVRDALGRPKFFLCTL 613
            DL     T +RE     EVAR       +    +    S  LA+A+VEGR ++ N++F+  +GY   EL RLT   L A  +L++T   ++ ML   +G   E+       +T  A+ K       ++   L I++SLV+       FF C+L
Sbjct:   22 DLSVATATSVREDR---EVAR------GVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELGRLTFFNLVAPEELQDTFAAVARMLNQPSGGEEEKEDSKMLRLTRRALPKVGIGGLGQEAQNLHITISLVKPQEDSMAFFQCSL 165          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1197.1501.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JG03_9PHAE5.440e-8252.11BHLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G8G2_ECTSI6.450e-5342.94BHLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A4D9CZ03_9STRA9.920e-1328.51Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
W7TXM2_9STRA5.390e-728.46Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
I2CQP3_NANGC6.660e-630.07Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 57..77
NoneNo IPR availableCOILSCoilCoilcoord: 466..486
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 423..475
e-value: 4.8E-4
score: 29.4
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 418..470
e-value: 2.9E-5
score: 23.9
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 417..469
score: 10.042
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 409..494
e-value: 9.3E-9
score: 37.1
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 413..483
IPR000014PAS domainTIGRFAMTIGR00229TIGR00229coord: 508..612
e-value: 3.1E-6
score: 25.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1197contigF-serratus_M_contig1197:82741..100479 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1197.1501.1mRNA_F-serratus_M_contig1197.1501.1Fucus serratus malemRNAF-serratus_M_contig1197 81835..109516 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1197.1501.1 ID=prot_F-serratus_M_contig1197.1501.1|Name=mRNA_F-serratus_M_contig1197.1501.1|organism=Fucus serratus male|type=polypeptide|length=744bp
MTVDPLDAVGQGHAWYGYNLPRLDGNGRQAPGDSSATPLEILRRSGGLMA
DQLFGGVATQEEHQEEQEHQEEQHQQQGRRQETAAKVKKKVNSSKARNRA
RRQNDFFNQVHTSGVEPADCPRAKPVSTATVTTTASAHSLQYPTPPTAPT
GMHGYPFPVVDLHNRVPLVQPDQHHAIGQGQHHQTGQAVVAAAAAGHYTA
LDLSFPLPMPGLIGAGAGTGTIASGSPFSSHPSAMIATASCVASDSYNAL
GNPASGLGLWGWCFPTTIMPAGVTAPPGVGVMGAGGTGEIIHGVGLRGGS
GVVGGDGRSRQSGGREPPFFTPNEDMVPLGPPKPPARVWDKSAVGGVAHG
MKGGTGVEGVGGFGGGRCVGGQGVKDESSPRTAGMRATEMGGGVAGAGLR
TGAKGELCSTASDASEMKRQERNAREQRRSLMTSQQIDKLRLILQEDGID
TKANKCSVLSEVVGYVTQLEQGLQDLEAERQTWLRETADAPEVARQGPNG
GSIDCKQVLSNESVALAMATVEGRLMEGNLKFKSLSGYGDEELKRLTLLK
LTAAPDLEETCEGLSAMLTDGTGKAPEQVTANAVLKEKDTKLRISVSLVR
DALGRPKFFLCTLLSNTTNTTNTTIAEDGTTPKATSQPPSFCSLGRSSSF
SASAASDTPASTPGESSELVLAKARRRPSSSSASVSSDAPASTLEESSEL
GLAKARPPVNLKKRGSSSANLAVKVESERSWMARASKPGAPAT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR036638HLH_DNA-bd_sf
IPR000014PAS