mRNA_F-serratus_M_contig1195.1490.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1195.1490.1
Unique NamemRNA_F-serratus_M_contig1195.1490.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1195.1490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1195contigF-serratus_M_contig1195:94836..95628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size795
Cds size792
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929090.8201094-CDS-F-serratus_M_contig1195:94836..956281622929090.8201094-CDS-F-serratus_M_contig1195:94836..95628Fucus serratus maleCDSF-serratus_M_contig1195 94837..95628 -
1690962700.5382664-CDS-F-serratus_M_contig1195:94836..956281690962700.5382664-CDS-F-serratus_M_contig1195:94836..95628Fucus serratus maleCDSF-serratus_M_contig1195 94837..95628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1195.1490.1prot_F-serratus_M_contig1195.1490.1Fucus serratus malepolypeptideF-serratus_M_contig1195 94837..95628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1195.1490.1

>prot_F-serratus_M_contig1195.1490.1 ID=prot_F-serratus_M_contig1195.1490.1|Name=mRNA_F-serratus_M_contig1195.1490.1|organism=Fucus serratus male|type=polypeptide|length=264bp
KPAQYCAQHATDGMVNIISRKCRTEGCDNQPSFGMEGTNTAEYCAQHALD
EMVDVKDIKRRTEGCSSVPSFEVAGTKTAEYCARPAPDEMVVVCSRKKCK
TEVCGKQPSFGVAGSKTAQCRSQHALDGMVHVKKINSKTEGCRSWPSFGV
ATNTIEYFAQHAPDLMVDAININCKTEDCSKRPSFGMVDTKTTVYCAQHA
QNGEVDVKNRKCTFKGCGKGPSIGLANISTVEHSSQHTSFGGTGTWKTEY
YCARHTMLNCGIEG
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mRNA from alignment at F-serratus_M_contig1195:94836..95628-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1195.1490.1 ID=mRNA_F-serratus_M_contig1195.1490.1|Name=mRNA_F-serratus_M_contig1195.1490.1|organism=Fucus serratus male|type=mRNA|length=793bp|location=Sequence derived from alignment at F-serratus_M_contig1195:94836..95628- (Fucus serratus male)
AAACCGGCGCAGTATTGTGCACAGCACGCCACAGACGGGATGGTCAACAT
CATCAGCAGGAAGTGCAGAACCGAAGGCTGTGACAACCAACCGTCGTTTG
GAATGGAAGGTACAAATACTGCGGAGTACTGCGCACAGCACGCCTTGGAC
GAAATGGTGGACGTCAAGGATATAAAGCGCAGAACCGAAGGCTGCAGCAG
TGTCCCATCGTTCGAAGTGGCAGGCACGAAAACTGCAGAGTACTGTGCAC
GGCCCGCCCCGGACGAGATGGTTGTCGTCTGCAGCAGAAAGAAGTGCAAA
ACCGAAGTTTGCGGTAAGCAACCGTCGTTCGGAGTGGCTGGGTCGAAAAC
GGCGCAGTGCCGTTCGCAGCACGCCCTGGACGGGATGGTCCATGTCAAGA
AAATAAATAGCAAAACCGAAGGCTGCAGGAGTTGGCCATCGTTCGGAGTG
GCTACAAATACTATAGAGTACTTTGCGCAGCACGCCCCGGACTTGATGGT
CGACGCCATAAACATAAACTGCAAAACCGAAGATTGCAGCAAGAGGCCAT
CGTTTGGAATGGTAGATACGAAAACAACGGTGTACTGTGCACAGCACGCC
CAAAACGGGGAGGTCGACGTCAAGAATAGAAAGTGTACATTCAAAGGCTG
CGGCAAGGGGCCGTCAATCGGATTGGCCAACATAAGCACGGTCGAACACA
GTTCGCAGCACACATCATTTGGAGGTACTGGAACATGGAAGACGGAATAC
TACTGTGCACGGCACACCATGCTAAACTGCGGCATCGAAGGAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1195:94836..95628-

>mRNA_F-serratus_M_contig1195.1490.1 ID=mRNA_F-serratus_M_contig1195.1490.1|Name=mRNA_F-serratus_M_contig1195.1490.1|organism=Fucus serratus male|type=CDS|length=1584bp|location=Sequence derived from alignment at F-serratus_M_contig1195:94836..95628- (Fucus serratus male)
AAACCGGCGCAGTATTGTGCACAGCACGCCACAGACGGGATGGTCAACAT
CATCAGCAGGAAGTGCAGAACCGAAGGCTGTGACAACCAACCGTCGTTTG
GAATGGAAGGTACAAATACTGCGGAGTACTGCGCACAGCACGCCTTGGAC
GAAATGGTGGACGTCAAGGATATAAAGCGCAGAACCGAAGGCTGCAGCAG
TGTCCCATCGTTCGAAGTGGCAGGCACGAAAACTGCAGAGTACTGTGCAC
GGCCCGCCCCGGACGAGATGGTTGTCGTCTGCAGCAGAAAGAAGTGCAAA
ACCGAAGTTTGCGGTAAGCAACCGTCGTTCGGAGTGGCTGGGTCGAAAAC
GGCGCAGTGCCGTTCGCAGCACGCCCTGGACGGGATGGTCCATGTCAAGA
AAATAAATAGCAAAACCGAAGGCTGCAGGAGTTGGCCATCGTTCGGAGTG
GCTACAAATACTATAGAGTACTTTGCGCAGCACGCCCCGGACTTGATGGT
CGACGCCATAAACATAAACTGCAAAACCGAAGATTGCAGCAAGAGGCCAT
CGTTTGGAATGGTAGATACGAAAACAACGGTGTACTGTGCACAGCACGCC
CAAAACGGGGAGGTCGACGTCAAGAATAGAAAGTGTACATTCAAAGGCTG
CGGCAAGGGGCCGTCAATCGGATTGGCCAACATAAGCACGGTCGAACACA
GTTCGCAGCACACATCATTTGGAGGTACTGGAACATGGAAGACGGAATAC
TACTGTGCACGGCACACCATGCTAAACTGCGGCATCGAAGGAAAACCGGC
GCAGTATTGTGCACAGCACGCCACAGACGGGATGGTCAACATCATCAGCA
GGAAGTGCAGAACCGAAGGCTGTGACAACCAACCGTCGTTTGGAATGGAA
GGTACAAATACTGCGGAGTACTGCGCACAGCACGCCTTGGACGAAATGGT
GGACGTCAAGGATATAAAGCGCAGAACCGAAGGCTGCAGCAGTGTCCCAT
CGTTCGAAGTGGCAGGCACGAAAACTGCAGAGTACTGTGCACGGCCCGCC
CCGGACGAGATGGTTGTCGTCTGCAGCAGAAAGAAGTGCAAAACCGAAGT
TTGCGGTAAGCAACCGTCGTTCGGAGTGGCTGGGTCGAAAACGGCGCAGT
GCCGTTCGCAGCACGCCCTGGACGGGATGGTCCATGTCAAGAAAATAAAT
AGCAAAACCGAAGGCTGCAGGAGTTGGCCATCGTTCGGAGTGGCTACAAA
TACTATAGAGTACTTTGCGCAGCACGCCCCGGACTTGATGGTCGACGCCA
TAAACATAAACTGCAAAACCGAAGATTGCAGCAAGAGGCCATCGTTTGGA
ATGGTAGATACGAAAACAACGGTGTACTGTGCACAGCACGCCCAAAACGG
GGAGGTCGACGTCAAGAATAGAAAGTGTACATTCAAAGGCTGCGGCAAGG
GGCCGTCAATCGGATTGGCCAACATAAGCACGGTCGAACACAGTTCGCAG
CACACATCATTTGGAGGTACTGGAACATGGAAGACGGAATACTACTGTGC
ACGGCACACCATGCTAAACTGCGGCATCGAAGGA
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