mRNA_F-serratus_M_contig1191.1480.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1191.1480.1
Unique NamemRNA_F-serratus_M_contig1191.1480.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1191.1480.1 vs. uniprot
Match: D7FZQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ7_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 4.180e-53
Identity = 91/158 (57.59%), Postives = 118/158 (74.68%), Query Frame = 1
Query:    1 FLAQGRRCRLDKRVSGGLGKVIRCSGAIIVAGVKGATGCQARVRAYKERSTNECNVTEAVLDHVQCTGQTGDKRKRACRRSVEEEAAKLINANHKLTSPALVKTLKATAGVEISERTANRVRSDVLGKGQRATAAHYQLLDSYLSSIGRNNGNIVECE 474
             ++Q R+CRLDKRVSGG GK+ RC+GAII    K  +GC  R R  K+ +     VTE VLDHV CTGQ G+K++R  RR VE EAA L++ANH +T P+LVKTLKAT+GV++SER+A+R+R+D+LGKG+ A A  YQLL S    +GR+NGNIVEC+
Sbjct:    1 MISQSRQCRLDKRVSGGRGKLHRCTGAIING--KATSGCPVRARGCKQ-TDGTWKVTEVVLDHVACTGQAGNKKQRINRRCVEGEAAALVSANHSITCPSLVKTLKATSGVDVSERSASRMRADILGKGKDAIAKEYQLLQSSCDLLGRDNGNIVECQ 155          
BLAST of mRNA_F-serratus_M_contig1191.1480.1 vs. uniprot
Match: A0A6H5JX21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX21_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.510e-50
Identity = 89/158 (56.33%), Postives = 113/158 (71.52%), Query Frame = 1
Query:    1 FLAQGRRCRLDKRVSGGLGKVIRCSGAIIVAGVKGATGCQARVRAYKERSTNECNVTEAVLDHVQCTGQTGDKRKRACRRSVEEEAAKLINANHKLTSPALVKTLKATAGVEISERTANRVRSDVLGKGQRATAAHYQLLDSYLSSIGRNNGNIVECE 474
             ++  R+CRLDKRVSGG GK+ RC+GA+I    K  +GC    RA K        VTE VLDHV CTGQ G+K++R  RR VEEEAA L+++N  +T PAL KTLKAT+GV+ISERTA R+R+D+LGKG+   A  YQLL SY   +GR+NGN+VEC+
Sbjct:   47 MISTSRQCRLDKRVSGGRGKLHRCTGAVING--KATSGCPVLARACKLHD-GTWKVTEVVLDHVACTGQAGNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDNGNVVECK 201          
BLAST of mRNA_F-serratus_M_contig1191.1480.1 vs. uniprot
Match: A0A6H5KQC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQC0_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.090e-49
Identity = 90/157 (57.32%), Postives = 114/157 (72.61%), Query Frame = 1
Query:    1 FLAQGRRCRLDKRVSGGLGKVIRCSGAIIVAGVKGATGCQARVRAYKERSTNECNVTEAVLDHVQCTGQTGDKRKRACRRSVEEEAAKLINANHKLTSPALVKTLKATAGVEISERTANRVRSDVLGKGQRATAAHYQLLDSYLSSIGRNNGNIVEC 471
             ++Q R+CRLDKR SGG  K+ RC+GAII    K  +GC  R R  K+ +     VTEAVLDHV CTGQ G+K++   RR VE++AA L++ANH +T P+LVKTLKAT+GV+ISERTA R+R D+LGKG  A A  YQLL +Y   +GR+NGNIVEC
Sbjct:    1 MISQSRQCRLDKRDSGGRSKLHRCTGAIING--KATSGCPVRARGCKQ-TDGTWKVTEAVLDHVACTGQAGNKKQGINRRCVEKQAAALVSANHSITCPSLVKTLKATSGVDISERTAGRMRVDILGKGNDAIAKEYQLLQNYCDLLGRDNGNIVEC 154          
BLAST of mRNA_F-serratus_M_contig1191.1480.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 9.580e-47
Identity = 89/158 (56.33%), Postives = 113/158 (71.52%), Query Frame = 1
Query:    1 FLAQGRRCRLDKRVSGGLGKVIRCSGAIIVAGVKGATGCQARVRAYKERSTNECNVTEAVLDHVQCTGQTGDKRKRACRRSVEEEAAKLINANHKLTSPALVKTLKATAGVEISERTANRVRSDVLGKGQRATAAHYQLLDSYLSSIGRNNGNIVECE 474
             ++  R+CRLDKRVSGG GK+ RC+GA+I    K  +GC    RA K        VTE VLDHV CTGQ G+K++R  RR VEEEAA L+++N  +T PAL KTLKAT+GV+ISERTA R+R+D+LGKG+   A  YQLL SY   +GR+NGN+VEC+
Sbjct:   47 MISTSRQCRLDKRVSGGRGKLHRCTGAVING--KATSGCPVLARACKLHD-GTWKVTEVVLDHVACTGQAGNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDNGNVVECK 201          
BLAST of mRNA_F-serratus_M_contig1191.1480.1 vs. uniprot
Match: A0A6H5J5Y0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5Y0_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.230e-46
Identity = 84/152 (55.26%), Postives = 111/152 (73.03%), Query Frame = 1
Query:    1 FLAQGRRCRLDKRVSGGLGKVIRCSGAIIVAGVKGATGCQARVRAYKERSTNECNVTEAVLDHVQCTGQTGDKRKRACRRSVEEEAAKLINANHKLTSPALVKTLKATAGVEISERTANRVRSDVLGKGQRATAAHYQLLDSYLSSIGRNNG 456
             +AQ R+CRLDKR+ GG GK+ RC+GAI+    K  +GC    R  K+ +     VTE VLDHV CTGQ  +K++R  RR VE EAA L++ANH++T P+LVKTLKAT+GV++SERTA+R+R+D+LGKG+ A A  YQLL SY   +GR+NG
Sbjct:  155 MIAQSRQCRLDKRIIGGRGKLHRCTGAIVNG--KATSGCPVLARGCKQ-TDGTWKVTEVVLDHVACTGQASNKKQRINRRCVEREAAALVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYCDLLGRDNG 303          
BLAST of mRNA_F-serratus_M_contig1191.1480.1 vs. uniprot
Match: A0A6H5L768_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L768_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 4.790e-36
Identity = 72/135 (53.33%), Postives = 97/135 (71.85%), Query Frame = 1
Query:   70 CSGAIIVAGVKGATGCQARVRAYKERSTNECNVTEAVLDHVQCTGQTGDKRKRACRRSVEEEAAKLINANHKLTSPALVKTLKATAGVEISERTANRVRSDVLGKGQRATAAHYQLLDSYLSSIGRNNGNIVECE 474
            C+GAI+    K  +GC  R R  K+ +     V + VLDHV  TGQ G+K++R  RR VE EA  L++ANH++T P+LVKTLKAT+GV++SERTA+R+R+D+LGKG+ A A  YQLL SY   +GR+N NIVEC+
Sbjct:   21 CTGAIVNG--KATSGCPVRARGCKQ-TDGTWKVMDVVLDHVARTGQAGNKKQRINRRCVEGEATGLVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYGDLLGRDNRNIVECK 152          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1191.1480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FZQ7_ECTSI4.180e-5357.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JX21_9PHAE1.510e-5056.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQC0_9PHAE1.090e-4957.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4I0_9PHAE9.580e-4756.33SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J5Y0_9PHAE1.230e-4655.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L768_9PHAE4.790e-3653.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1191contigF-serratus_M_contig1191:258551..259024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929088.5662682-CDS-F-serratus_M_contig1191:258550..2590241622929088.5662682-CDS-F-serratus_M_contig1191:258550..259024Fucus serratus maleCDSF-serratus_M_contig1191 258551..259024 -
1690962699.4555635-CDS-F-serratus_M_contig1191:258550..2590241690962699.4555635-CDS-F-serratus_M_contig1191:258550..259024Fucus serratus maleCDSF-serratus_M_contig1191 258551..259024 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1191.1480.1prot_F-serratus_M_contig1191.1480.1Fucus serratus malepolypeptideF-serratus_M_contig1191 258551..259024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1191.1480.1

>prot_F-serratus_M_contig1191.1480.1 ID=prot_F-serratus_M_contig1191.1480.1|Name=mRNA_F-serratus_M_contig1191.1480.1|organism=Fucus serratus male|type=polypeptide|length=158bp
FLAQGRRCRLDKRVSGGLGKVIRCSGAIIVAGVKGATGCQARVRAYKERS
TNECNVTEAVLDHVQCTGQTGDKRKRACRRSVEEEAAKLINANHKLTSPA
LVKTLKATAGVEISERTANRVRSDVLGKGQRATAAHYQLLDSYLSSIGRN
NGNIVECE
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mRNA from alignment at F-serratus_M_contig1191:258551..259024-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1191.1480.1 ID=mRNA_F-serratus_M_contig1191.1480.1|Name=mRNA_F-serratus_M_contig1191.1480.1|organism=Fucus serratus male|type=mRNA|length=474bp|location=Sequence derived from alignment at F-serratus_M_contig1191:258551..259024- (Fucus serratus male)
TTTTTGGCACAGGGTAGGCGGTGCCGCCTAGATAAGAGAGTATCTGGCGG CCTGGGCAAGGTCATCCGCTGCAGCGGGGCAATCATCGTCGCCGGCGTGA AGGGGGCAACGGGTTGCCAGGCGCGCGTTCGCGCGTACAAGGAAAGGTCT ACCAATGAATGTAATGTAACCGAGGCCGTCCTTGATCACGTGCAGTGCAC CGGGCAGACCGGTGACAAGAGAAAACGGGCCTGCCGAAGGTCGGTGGAGG AAGAAGCCGCAAAGCTCATCAATGCGAACCACAAGCTAACATCGCCAGCA CTCGTAAAAACGTTGAAAGCGACCGCCGGCGTTGAGATCTCCGAGCGTAC GGCCAACCGCGTGCGATCCGACGTGCTCGGCAAAGGTCAACGTGCGACCG CTGCACATTACCAACTTCTCGACAGCTACCTGAGCAGCATCGGGAGGAAC AACGGCAACATCGTGGAATGCGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1191:258551..259024-

>mRNA_F-serratus_M_contig1191.1480.1 ID=mRNA_F-serratus_M_contig1191.1480.1|Name=mRNA_F-serratus_M_contig1191.1480.1|organism=Fucus serratus male|type=CDS|length=948bp|location=Sequence derived from alignment at F-serratus_M_contig1191:258551..259024- (Fucus serratus male)
TTTTTGGCACAGGGTAGGCGGTGCCGCCTAGATAAGAGAGTATCTGGCGG
CCTGGGCAAGGTCATCCGCTGCAGCGGGGCAATCATCGTCGCCGGCGTGA
AGGGGGCAACGGGTTGCCAGGCGCGCGTTCGCGCGTACAAGGAAAGGTCT
ACCAATGAATGTAATGTAACCGAGGCCGTCCTTGATCACGTGCAGTGCAC
CGGGCAGACCGGTGACAAGAGAAAACGGGCCTGCCGAAGGTCGGTGGAGG
AAGAAGCCGCAAAGCTCATCAATGCGAACCACAAGCTAACATCGCCAGCA
CTCGTAAAAACGTTGAAAGCGACCGCCGGCGTTGAGATCTCCGAGCGTAC
GGCCAACCGCGTGCGATCCGACGTGCTCGGCAAAGGTCAACGTGCGACCG
CTGCACATTACCAACTTCTCGACAGCTACCTGAGCAGCATCGGGAGGAAC
AACGGCAACATCGTGGAATGCGAGTTTTTGGCACAGGGTAGGCGGTGCCG
CCTAGATAAGAGAGTATCTGGCGGCCTGGGCAAGGTCATCCGCTGCAGCG
GGGCAATCATCGTCGCCGGCGTGAAGGGGGCAACGGGTTGCCAGGCGCGC
GTTCGCGCGTACAAGGAAAGGTCTACCAATGAATGTAATGTAACCGAGGC
CGTCCTTGATCACGTGCAGTGCACCGGGCAGACCGGTGACAAGAGAAAAC
GGGCCTGCCGAAGGTCGGTGGAGGAAGAAGCCGCAAAGCTCATCAATGCG
AACCACAAGCTAACATCGCCAGCACTCGTAAAAACGTTGAAAGCGACCGC
CGGCGTTGAGATCTCCGAGCGTACGGCCAACCGCGTGCGATCCGACGTGC
TCGGCAAAGGTCAACGTGCGACCGCTGCACATTACCAACTTCTCGACAGC
TACCTGAGCAGCATCGGGAGGAACAACGGCAACATCGTGGAATGCGAG
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