mRNA_F-serratus_M_contig1188.1469.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1188.1469.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 219 bits (558), Expect = 3.760e-62 Identity = 116/250 (46.40%), Postives = 170/250 (68.00%), Query Frame = 2
Query: 524 NLESGVLEMNQTAYAENLAAQYGISAISNIPGSPGVDLCPTNDDKPGGNDEFPLYRPLVGSLMSLSVMARPDIATMLRACAHHSHNSSARHWKALQQIAAYIISTKYIGLKFVRGSGLKPTVFADDADYAAASNDRRSVSGVAVILGDTAIGWESYTQKCVTTATCEGEYVALCDASKEALFMRAVLIFLQPELSGMRVDFVGDNEGAKAIANSPSSASRSKHIDVKLHFIRGWARAGEVRVLHVGTAEQ 1273
+LE+G L ++QTAY +++ ++ + + S+IP SPGVD+ P DD+ GG E+P+ R +GS+M +S +RPDI+ +RA A H+H + RHWKA+ +I AY+ T+ +G+ + RGSGL V+ D A YA A DRRSVSG+A +G T I S TQ V+ ++ E EY+A + KEALF+RAVL F+ PE SG + + DN+GA A+ +P S++RSKHIDV+ HFIRG R+G++ + V T+EQ
Sbjct: 239 DLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGG--EWPV-REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVD-ASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQ 483
BLAST of mRNA_F-serratus_M_contig1188.1469.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE) HSP 1 Score: 208 bits (529), Expect = 1.670e-56 Identity = 112/282 (39.72%), Postives = 172/282 (60.99%), Query Frame = 2
Query: 428 ECVREILDATEGKISRKKQRGTKNIHRLCFRSNLESGVLEMNQTAYAENLAAQYGISAISNIPGSPGVDLCPTNDDKPGGNDEFPLYRPLVGSLMSLSVMARPDIATMLRACAHHSHNSSARHWKALQQIAAYIISTKYIGLKFVRGSGLKPTVFADDADYAAASNDRRSVSGVAVILGDTAIGWESYTQKCVTTATCEGEYVALCDASKEALFMRAVLIFLQPELSGMRVDFVGDNEGAKAIANSPSSASRSKHIDVKLHFIRGWARAGEVRVLHVGTAEQ 1273
E E+L + K K + ++E+G L ++QTAY +++ A++ + + S IP +PG DL P +D+ GG E+P+ R +GS+M +S +RPD++ +RA A H+H + RHW A+Q+I Y+ T+ +G+ + RGSGL V+ D A YA + DRRSVSG+A +G T + S TQ V+ ++ E EY+A + KEALF+RAVL+F+ PE G + + DN+GA A+ +P S+ R+ HIDV+ HFIRG +G++ V V T EQ
Sbjct: 455 EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVARFDVQSTSRIPATPGADLGPKREDEEGG--EWPV-REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVD-ASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSMEAEYIAAGEGVKEALFVRAVLLFVAPETRGSSIQVLEDNQGAMALVQNPLSSGRTTHIDVRFHFIRGLFGSGDISVKFVPTTEQ 731
BLAST of mRNA_F-serratus_M_contig1188.1469.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 210 bits (534), Expect = 4.190e-56 Identity = 114/282 (40.43%), Postives = 173/282 (61.35%), Query Frame = 2
Query: 428 ECVREILDATEGKISRKKQRGTKNIHRLCFRSNLESGVLEMNQTAYAENLAAQYGISAISNIPGSPGVDLCPTNDDKPGGNDEFPLYRPLVGSLMSLSVMARPDIATMLRACAHHSHNSSARHWKALQQIAAYIISTKYIGLKFVRGSGLKPTVFADDADYAAASNDRRSVSGVAVILGDTAIGWESYTQKCVTTATCEGEYVALCDASKEALFMRAVLIFLQPELSGMRVDFVGDNEGAKAIANSPSSASRSKHIDVKLHFIRGWARAGEVRVLHVGTAEQ 1273
E E+L + K K + ++E+G L ++QTAY +++ ++ + + S IP +PG DL P +D+ GG E+P+ R +GS+M +S +RPD++ +RA A H+H + RHW A+Q+I Y+ T+ +G+ + RGSGL V+ D A YA + DRRSVSG+A +G T + S TQ V+ ++ E EY+A + KEALF+RAVL F+ PE SG + + DN+GA A+ +P S+ R+KHIDV+ HFIRG R+G++ V V T EQ
Sbjct: 944 EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWPV-REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVD-ASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQ 1220
BLAST of mRNA_F-serratus_M_contig1188.1469.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 210 bits (534), Expect = 4.690e-56 Identity = 114/282 (40.43%), Postives = 173/282 (61.35%), Query Frame = 2
Query: 428 ECVREILDATEGKISRKKQRGTKNIHRLCFRSNLESGVLEMNQTAYAENLAAQYGISAISNIPGSPGVDLCPTNDDKPGGNDEFPLYRPLVGSLMSLSVMARPDIATMLRACAHHSHNSSARHWKALQQIAAYIISTKYIGLKFVRGSGLKPTVFADDADYAAASNDRRSVSGVAVILGDTAIGWESYTQKCVTTATCEGEYVALCDASKEALFMRAVLIFLQPELSGMRVDFVGDNEGAKAIANSPSSASRSKHIDVKLHFIRGWARAGEVRVLHVGTAEQ 1273
E E+L + K K + ++E+G L ++QTAY +++ ++ + + S IP +PG DL P +D+ GG E+P+ R +GS+M +S +RPD++ +RA A H+H + RHW A+Q+I Y+ T+ +G+ + RGSGL V+ D A YA + DRRSVSG+A +G T + S TQ V+ ++ E EY+A + KEALF+RAVL F+ PE SG + + DN+GA A+ +P S+ R+KHIDV+ HFIRG R+G++ V V T EQ
Sbjct: 1323 EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWPV-REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVD-ASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQ 1599
BLAST of mRNA_F-serratus_M_contig1188.1469.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 210 bits (534), Expect = 4.740e-56 Identity = 114/282 (40.43%), Postives = 173/282 (61.35%), Query Frame = 2
Query: 428 ECVREILDATEGKISRKKQRGTKNIHRLCFRSNLESGVLEMNQTAYAENLAAQYGISAISNIPGSPGVDLCPTNDDKPGGNDEFPLYRPLVGSLMSLSVMARPDIATMLRACAHHSHNSSARHWKALQQIAAYIISTKYIGLKFVRGSGLKPTVFADDADYAAASNDRRSVSGVAVILGDTAIGWESYTQKCVTTATCEGEYVALCDASKEALFMRAVLIFLQPELSGMRVDFVGDNEGAKAIANSPSSASRSKHIDVKLHFIRGWARAGEVRVLHVGTAEQ 1273
E E+L + K K + ++E+G L ++QTAY +++ ++ + + S IP +PG DL P +D+ GG E+P+ R +GS+M +S +RPD++ +RA A H+H + RHW A+Q+I Y+ T+ +G+ + RGSGL V+ D A YA + DRRSVSG+A +G T + S TQ V+ ++ E EY+A + KEALF+RAVL F+ PE SG + + DN+GA A+ +P S+ R+KHIDV+ HFIRG R+G++ V V T EQ
Sbjct: 1343 EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWPV-REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVD-ASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQ 1619
BLAST of mRNA_F-serratus_M_contig1188.1469.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 210 bits (534), Expect = 4.800e-56 Identity = 114/282 (40.43%), Postives = 173/282 (61.35%), Query Frame = 2
Query: 428 ECVREILDATEGKISRKKQRGTKNIHRLCFRSNLESGVLEMNQTAYAENLAAQYGISAISNIPGSPGVDLCPTNDDKPGGNDEFPLYRPLVGSLMSLSVMARPDIATMLRACAHHSHNSSARHWKALQQIAAYIISTKYIGLKFVRGSGLKPTVFADDADYAAASNDRRSVSGVAVILGDTAIGWESYTQKCVTTATCEGEYVALCDASKEALFMRAVLIFLQPELSGMRVDFVGDNEGAKAIANSPSSASRSKHIDVKLHFIRGWARAGEVRVLHVGTAEQ 1273
E E+L + K K + ++E+G L ++QTAY +++ ++ + + S IP +PG DL P +D+ GG E+P+ R +GS+M +S +RPD++ +RA A H+H + RHW A+Q+I Y+ T+ +G+ + RGSGL V+ D A YA + DRRSVSG+A +G T + S TQ V+ ++ E EY+A + KEALF+RAVL F+ PE SG + + DN+GA A+ +P S+ R+KHIDV+ HFIRG R+G++ V V T EQ
Sbjct: 1486 EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWPV-REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVD-ASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQ 1762
BLAST of mRNA_F-serratus_M_contig1188.1469.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE) HSP 1 Score: 209 bits (533), Expect = 6.600e-56 Identity = 116/251 (46.22%), Postives = 170/251 (67.73%), Query Frame = 2
Query: 524 NLESGV-LEMNQTAYAENLAAQYGISAISNIPGSPGVDLCPTNDDKPGGNDEFPLYRPLVGSLMSLSVMARPDIATMLRACAHHSHNSSARHWKALQQIAAYIISTKYIGLKFVRGSGLKPTVFADDADYAAASNDRRSVSGVAVILGDTAIGWESYTQKCVTTATCEGEYVALCDASKEALFMRAVLIFLQPELSGMRVDFVGDNEGAKAIANSPSSASRSKHIDVKLHFIRGWARAGEVRVLHVGTAEQ 1273
+LE+G+ L ++QTAY + + ++ + + S+IP SPGVD+ P DD+ GG E+P+ R +GS+M +S +RPDI+ +RA A H+H + RHWKA+ +I AY+ T+ +G+ + RGSGL V+ D A YA A DRRSVSG+A +G T I S TQ V+ ++ E EY+A + KEALF+RAVL F+ PE SG + + DN+GA A+ +P S++RSKHIDV+ HFIRG R+G++ + V T+EQ
Sbjct: 1628 DLEAGMTLRISQTAYID-IVNRFDVQSTSSIPASPGVDIGPKRDDESGG--EWPV-REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLEVYVD-ASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQ 1872
BLAST of mRNA_F-serratus_M_contig1188.1469.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE) HSP 1 Score: 189 bits (480), Expect = 4.950e-53 Identity = 102/254 (40.16%), Postives = 153/254 (60.24%), Query Frame = 2
Query: 515 FRSNLESGVLEMNQTAYAENLAAQYGISAISNIPGSPGVDLCPTNDDKPGGNDEFPLYRPLVGSLMSLSVMARPDIATMLRACAHHSHNSSARHWKALQQIAAYIISTKYIGLKFVRGSGLKP-TVFADDADYAAASNDRRSVSGVAVILGDTAIGWESYTQKCVTTATCEGEYVALCDASKEALFMRAVLIFLQPELSGMRVDFVGDNEGAKAIANSPSSASRSKHIDVKLHFIRGWARAGEVRVLHVGTAEQ 1273
F + E+G +E++Q +Y ++ ++ + S+IP SP D +D+ G+ F R +VGSLM ++ RPDI+ LRA HSH HWKA Q+I Y++ T ++ LKF + + T+ DAD+A+ +NDRRSVSG V++ + W S TQKCV+ + E EY A+ D K+ALF+ +L FL+P + ++D + DNE A A+A +P S+SRSKHIDV+ HF+R G + V HV + EQ
Sbjct: 53 FVRDREAGTIEISQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPF---REVVGSLMWIANQTRPDISNALRAVVRHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSISEAEYFAMGDGVKKALFVNGMLQFLRPSANPRKIDVLEDNEEAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQ 303
BLAST of mRNA_F-serratus_M_contig1188.1469.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 199 bits (505), Expect = 5.300e-53 Identity = 114/289 (39.45%), Postives = 171/289 (59.17%), Query Frame = 2
Query: 428 ECVREILDATEGKISRKKQRGTKNIHRLCFRSNLESGVLEMNQTAYAENLAAQYGISAISNIPGSPGVDLCPTNDDKPGGNDEFPLYRPLVGSLMSLSVMARPDIATMLRACAHHSHNSSARHWKALQQIAAYIISTKYIGLKFVRGSGLKPTVFADDADYAAASNDRRSVSGVAVILGDTAIGWESYTQKCVTTATC-------EGEYVALCDASKEALFMRAVLIFLQPELSGMRVDFVGDNEGAKAIANSPSSASRSKHIDVKLHFIRGWARAGEVRVLHVGTAEQ 1273
E E+L + K K + ++E+G L ++QTAY +++ ++ + + S IP SPGVDL P DD+ GG E+P+ R +GS+M +S +RPD++ +RA A H+H + RHW A+Q+I Y+ T+ +G+ + RGSGL V+ D A YA + DRRSVSG+A +G T + S TQ V+ ++ E EY + KEALF+RAVL F+ PE SG + + DN+GA A+ +P S+ R+KHIDV+ HFIR R+G++ V + T EQ
Sbjct: 498 EDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGG--EWPV-REAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVD-ASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTXXXXXXTEAEYFTAGECVKEALFVRAVLSFVAPETSGSSIQVL-DNQGAMALVQNPLSSGRTKHIDVRFHFIRVLFRSGDISVKFIPTTEQ 780
BLAST of mRNA_F-serratus_M_contig1188.1469.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 200 bits (508), Expect = 6.870e-53 Identity = 112/284 (39.44%), Postives = 166/284 (58.45%), Query Frame = 2
Query: 428 ECVREILDATEGKISRKKQRGTKNIHRLC-FRSNLESGVLEMNQTAYAENLAAQYGISAISNIPGSPGVDLCPTNDDKPGGNDEFPLYRPLVGSLMSLSVMARPDIATMLRACAHHSHNSSARHWKALQQIAAYIISTKYIGLKFVRGSGLKP-TVFADDADYAAASNDRRSVSGVAVILGDTAIGWESYTQKCVTTATCEGEYVALCDASKEALFMRAVLIFLQPELSGMRVDFVGDNEGAKAIANSPSSASRSKHIDVKLHFIRGWARAGEVRVLHVGTAEQ 1273
+ + E++ A G K G C F + E+G +EM+Q +Y ++ ++ + S+IP SP D +D+ G+ F R +VGSLM ++ RPDI+ +RA A HSH HWKA Q+I Y++ T ++ LKF + + T+ DAD+A+ +NDRRSVSG V++ + W S TQKCV+ +T E EY+A+ D KEALF+ +L FL+P ++D + DNEGA A+A +P S+SRSKHIDV+ HF+R G + V HV + EQ
Sbjct: 654 KSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPF---REVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQ 934 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1188.1469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1188.1469.1 >prot_F-serratus_M_contig1188.1469.1 ID=prot_F-serratus_M_contig1188.1469.1|Name=mRNA_F-serratus_M_contig1188.1469.1|organism=Fucus serratus male|type=polypeptide|length=242bp MNQTAYAENLAAQYGISAISNIPGSPGVDLCPTNDDKPGGNDEFPLYRPLback to top mRNA from alignment at F-serratus_M_contig1188:211215..212487+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1188.1469.1 ID=mRNA_F-serratus_M_contig1188.1469.1|Name=mRNA_F-serratus_M_contig1188.1469.1|organism=Fucus serratus male|type=mRNA|length=1273bp|location=Sequence derived from alignment at F-serratus_M_contig1188:211215..212487+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1188:211215..212487+ >mRNA_F-serratus_M_contig1188.1469.1 ID=mRNA_F-serratus_M_contig1188.1469.1|Name=mRNA_F-serratus_M_contig1188.1469.1|organism=Fucus serratus male|type=CDS|length=1452bp|location=Sequence derived from alignment at F-serratus_M_contig1188:211215..212487+ (Fucus serratus male)back to top |