mRNA_F-serratus_M_contig1183.1464.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1183.1464.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE) HSP 1 Score: 113 bits (282), Expect = 5.690e-26 Identity = 59/105 (56.19%), Postives = 71/105 (67.62%), Query Frame = 3
Query: 180 SRKKEDDGFWLKEFGLLIKLDPFHAMQRLSKLVLKIHGACHAFLTRLCDAFFKVYRSDLEEVETALRQQGKSDAEIETIKEQTWGYFLSLCRRFISPSDKLLERF 494
S + ++ +LK GL++KLD FHAMQR+SKL+LK HGAC A+L RL DAFFKV DL VE ALRQ G S E+E K + W YFL CRR I +LLERF
Sbjct: 687 SSAEVEELLFLKVAGLVVKLDTFHAMQRVSKLILKSHGACRAYLARLRDAFFKVNAEDLAAVEAALRQAGMSKEEVEAKKAKDWVYFLKRCRRLIPRPAELLERF 791
BLAST of mRNA_F-serratus_M_contig1183.1464.1 vs. uniprot
Match: A0A1Y2A9B5_9FUNG (3'-5' exonuclease domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2A9B5_9FUNG) HSP 1 Score: 87.8 bits (216), Expect = 3.870e-17 Identity = 46/99 (46.46%), Postives = 62/99 (62.63%), Query Frame = 3
Query: 198 DGFWLKEFGLLIKLDPFHAMQRLSKLVLKIHGACHAFLTRLCDAFFKVYRSDLEEVETALRQQGKSDAEIETIKEQTWGYFLSLCRRFISPSDKLLERF 494
DGF LK ++LD FHAM R++K +LK HGA F+ RL DAFF + + DL+ V AL+ G SD EIE K+ W +FL C R I ++LL+R+
Sbjct: 429 DGFILK-----VRLDCFHAMNRINKTLLKSHGAYKPFMARLRDAFFLISKDDLDLVVAALKTAGLSDDEIEAKKDYDWAFFLKYCHRLIPCKEELLKRY 522
BLAST of mRNA_F-serratus_M_contig1183.1464.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 3.500e-16 Identity = 43/100 (43.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query: 195 DDGFWLKEFGLLIKLDPFHAMQRLSKLVLKIHGACHAFLTRLCDAFFKVYRSDLEEVETALRQQGKSDAEIETIKEQTWGYFLSLCRRFISPSDKLLERF 494
DD ++ L ++LD FHA+QR+S+L K HGA F+ RL DA F V + D++EVE AL +G + + K+++W YFL CRR + +LLERF
Sbjct: 774 DDWLGDEQCALQVRLDIFHALQRISRLCKKSHGAFKPFMARLKDACFIVNQDDIKEVEQALGSKGMTPEAVAEYKDKSWTYFLRNCRRLVPERQRLLERF 873
BLAST of mRNA_F-serratus_M_contig1183.1464.1 vs. uniprot
Match: D7FIV1_ECTSI (Similar to Werner syndrome protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV1_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 4.580e-16 Identity = 43/100 (43.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query: 195 DDGFWLKEFGLLIKLDPFHAMQRLSKLVLKIHGACHAFLTRLCDAFFKVYRSDLEEVETALRQQGKSDAEIETIKEQTWGYFLSLCRRFISPSDKLLERF 494
DD ++ L ++LD FHA+QR+S+L K HGA F+ RL DA F V + D++EVE AL +G + + K++ W YFL CRR + +LLERF
Sbjct: 488 DDWLGDEQCALQVRLDIFHALQRISRLCKKSHGAFKPFMARLRDACFIVNQDDIKEVEQALGSKGMTPEAVAEYKDKNWTYFLRNCRRLVPERQRLLERF 587
BLAST of mRNA_F-serratus_M_contig1183.1464.1 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 4.660e-16 Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = 3
Query: 231 IKLDPFHAMQRLSKLVLKIHGACHAFLTRLCDAFFKVYRSDLEEVETALRQQGKSDAEIETIKEQTWGYFLSLCRRFISPSDKLLERF 494
++LD FHA+ RLS+ + K HGA + RL DA F V R D+ ++E L ++G S A+++ K+Q W YFL CRR + P +LL+RF
Sbjct: 545 VRLDLFHALNRLSRTIKKGHGAFRPIMARLRDACFLVNRDDVLQIEKVLERRGMSPAQVQQAKDQDWSYFLRKCRRLVPPPSELLKRF 632
BLAST of mRNA_F-serratus_M_contig1183.1464.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.330e-14 Identity = 43/81 (53.09%), Postives = 50/81 (61.73%), Query Frame = 3
Query: 252 AMQRLSKLVLKIHGACHAFLTRLCDAFFKVYRSDLEEVETALRQQGKSDAEIETIKEQTWGYFLSLCRRFISPSDKLLERF 494
A +SKL+LK HGAC A+L RL D FFKV DL VE ALRQ G S E+E K + W FL CRR I +LL+RF
Sbjct: 313 AAGEVSKLILKSHGACRAYLARLRDEFFKVNAEDLAAVEAALRQAGMSKEEVEAKKGKDWVLFLKRCRRLIPRPAELLKRF 393
BLAST of mRNA_F-serratus_M_contig1183.1464.1 vs. uniprot
Match: A0A6H5KLP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLP1_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 5.530e-13 Identity = 43/105 (40.95%), Postives = 61/105 (58.10%), Query Frame = 3
Query: 195 DDGFWLK--EFGLLIKLDPFHAMQRLSKLVLKIHGACHAFLTRLCDAFFKVYRSDLEE---VETALRQQGKSDAEIETIKEQTWGYFLSLCRRFISPSDKLLERF 494
D +W+ E L ++LD FHA+QR+SKL K HGA F+ RL DA F V D++E VE AL +G + + K++ W +F+ CRR + +LLERF
Sbjct: 164 DMDYWVGNGESALKVRLDIFHALQRVSKLCKKSHGAFRPFMARLRDACFIVNLDDIKEASAVEQALAGKGMTPEAVVEYKDKNWTFFVRNCRRLVPEQKRLLERF 268
BLAST of mRNA_F-serratus_M_contig1183.1464.1 vs. uniprot
Match: A0A6H5JPK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK9_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 7.020e-13 Identity = 43/105 (40.95%), Postives = 61/105 (58.10%), Query Frame = 3
Query: 195 DDGFWLK--EFGLLIKLDPFHAMQRLSKLVLKIHGACHAFLTRLCDAFFKVYRSDLEE---VETALRQQGKSDAEIETIKEQTWGYFLSLCRRFISPSDKLLERF 494
D +W+ E L ++LD FHA+QR+SKL K HGA F+ RL DA F V D++E VE AL +G + + K++ W +F+ CRR + +LLERF
Sbjct: 164 DMDYWVGNGESALKVRLDIFHALQRVSKLCKKSHGAFKPFMARLRDACFIVNLDDIKEASAVEQALAGKGMTPEAVVEYKDKNWTFFVRNCRRLVPEQKRLLERF 268
BLAST of mRNA_F-serratus_M_contig1183.1464.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 5.900e-11 Identity = 37/101 (36.63%), Postives = 53/101 (52.48%), Query Frame = 3
Query: 231 IKLDPFHAMQRLSKLVLKIHGACHAFLTRLCDAFFKVYRSDLEE-------------VETALRQQGKSDAEIETIKEQTWGYFLSLCRRFISPSDKLLERF 494
++LDPFH + R+S++ K HGA F+ RL DA F V R D+ + VE L +G E++ + EQ W +FL RR + D LL+RF
Sbjct: 488 VRLDPFHTLNRISRMTKKSHGAFKPFMARLRDACFLVNRDDVYQASLKPFGWIWERSVEMTLEARGMKPEEVQQLTEQNWSFFLRSSRRLVPRRDVLLKRF 588
BLAST of mRNA_F-serratus_M_contig1183.1464.1 vs. uniprot
Match: A0A6H5JYR4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYR4_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 3.420e-10 Identity = 39/92 (42.39%), Postives = 52/92 (56.52%), Query Frame = 3
Query: 225 LLIKLDPFHAMQRLSKLVLKIHGACHAFLTRLCDAFFKVYRSDLEE---VETALRQQGKSDAEIETIKEQTWGYFLSLCRRFISPSDKLLER 491
L ++LD FHA+QR+S+L HGA F+ RL DA F V D++E VE AL QG + I K++ W YFL CRR + +L R
Sbjct: 497 LNVRLDIFHALQRISRLCKTKHGAFKPFMARLRDACFIVNADDVKEASAVERALEGQGMTSEAIAEYKDKNWTYFLRNCRRLVPEPKRLNTR 588 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1183.1464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1183.1464.1 >prot_F-serratus_M_contig1183.1464.1 ID=prot_F-serratus_M_contig1183.1464.1|Name=mRNA_F-serratus_M_contig1183.1464.1|organism=Fucus serratus male|type=polypeptide|length=80bp MQRLSKLVLKIHGACHAFLTRLCDAFFKVYRSDLEEVETALRQQGKSDAEback to top mRNA from alignment at F-serratus_M_contig1183:171290..172143- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1183.1464.1 ID=mRNA_F-serratus_M_contig1183.1464.1|Name=mRNA_F-serratus_M_contig1183.1464.1|organism=Fucus serratus male|type=mRNA|length=854bp|location=Sequence derived from alignment at F-serratus_M_contig1183:171290..172143- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1183:171290..172143- >mRNA_F-serratus_M_contig1183.1464.1 ID=mRNA_F-serratus_M_contig1183.1464.1|Name=mRNA_F-serratus_M_contig1183.1464.1|organism=Fucus serratus male|type=CDS|length=480bp|location=Sequence derived from alignment at F-serratus_M_contig1183:171290..172143- (Fucus serratus male)back to top |