prot_F-serratus_M_contig1182.1454.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1182.1454.1
Unique Nameprot_F-serratus_M_contig1182.1454.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length268
Homology
BLAST of mRNA_F-serratus_M_contig1182.1454.1 vs. uniprot
Match: A0A6H5JPH2_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPH2_9PHAE)

HSP 1 Score: 303 bits (776), Expect = 7.970e-98
Identity = 147/216 (68.06%), Postives = 164/216 (75.93%), Query Frame = 0
Query:   53 GVALRDDADKEANPSTPFTSKRKRRILGAGRRTGDVKDEGFSGTRVGFHTLKEYQVPREAPTNLPDGEDRGYPMLLYQFMHAQYPEDFPSQSRSRKAVRRKELLFNGEEVRNDIKVQPGDVITSQKRVQPGLFPMGKPTCNFEVVWEDDFIAIINKPPGVAVHGGTGPEDPGPGGRRSVRQSLPYILTPTKSEDSPLHRPLHCHRLDKPTGGLLVC 268
            G A       E  P  P  ++R        R  G V +EGFSGTR GF   KEY VP EAPTNLP+GED GYPML+YQFMHAQY +DFPS S +RKAVRRKELL NG EVRND KV PGD +T QKR QPGLFP GKP+C   ++WEDDFIA+I KP GVAVHGGTG +DPGPGGRRSVRQ+LPY+LTPTKS+D PLHRPLHCHRLDK TGGLL+C
Sbjct:   20 GTAAATPPGSETTPDAPTGAERSSPTPDTPRTLGGVAEEGFSGTRRGFQVQKEYAVPDEAPTNLPEGEDEGYPMLIYQFMHAQYRDDFPSVSSARKAVRRKELLLNGTEVRNDSKVNPGDTVTMQKRTQPGLFPQGKPSCTLPILWEDDFIAVIIKPAGVAVHGGTGEDDPGPGGRRSVRQALPYMLTPTKSKDRPLHRPLHCHRLDKATGGLLIC 235          
BLAST of mRNA_F-serratus_M_contig1182.1454.1 vs. uniprot
Match: A0A836CLS8_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLS8_9STRA)

HSP 1 Score: 122 bits (306), Expect = 7.890e-29
Identity = 72/187 (38.50%), Postives = 107/187 (57.22%), Query Frame = 0
Query:   95 GTRVGFHTLKEYQV---PREAPTNLPDGEDRGYPMLLYQFMHAQYPEDFPSQSRSRKAVRRKELLFNGEEVRNDIKVQPGDVITSQKRVQPG----LFPMGKPTCNFEVVWEDDFIAIINKPPGVAVHGGTGPEDPGPGGRR------SVRQSLPYILTPTKSEDSPLHRPLHCHRLDKPTGGLLVC 268
            G+   F  ++  +V   P   P ++  GE   +PMLL  +++A +P+ FPS S ++KAVRR+ELL N  E     +V PGD +    R +P     LF   KP  +  +V+EDD+IA++ KPPG+ VHG    E   P  ++      S+R ++ + L P+ + D+ L RP H HRLD PTGGL+VC
Sbjct:    5 GSTADFEVVQSMEVAERPPHVPADVRRGETGEWPMLLPMYLYAAHPDTFPSISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTKPATTAALFV--KPHLSLPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVPSLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVC 189          
BLAST of mRNA_F-serratus_M_contig1182.1454.1 vs. uniprot
Match: A0A6V2ZI66_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6V2ZI66_EMIHU)

HSP 1 Score: 103 bits (257), Expect = 6.390e-22
Identity = 71/184 (38.59%), Postives = 93/184 (50.54%), Query Frame = 0
Query:   93 FSGTRVGFHTLKEYQVPREAPTNLPDGEDRGYPMLLYQFMHAQYPEDFPSQSRSRKAVRRKELLFNGEEVRNDIKVQPGDVITSQKRVQPGLFPMGKPTCNFEVVWEDDFIAIINKPPGVAVHGGTGPEDPGPGGRR-------SVRQSLPYILTPTKS-EDSPLHRPLHCHRLDKPTGGLLVC 268
            ++GTR+G     E  VP       P          L + + A  P  FP+ SR+RKA+RR  +L NG EVR       GD++  Q RV PG  P GKP    EV +ED+ IA++ KP GV  H    P   G   RR       S+R ++ Y L P  +     L+RP  CHRLD+PT GLL+C
Sbjct:   50 YNGTRLGHAVTFEAVVPPSVAPGTP----------LPEVVMATDPGRFPTASRARKALRRGCVLINGAEVRCISTAGGGDLLALQARVSPGFSPRGKPPFPVEVAYEDESIAVVLKPAGVCTH----PPADGENRRRAGASHGNSMRSAIHYALQPPPAGTPGALYRPHICHRLDRPTSGLLLC 219          
BLAST of mRNA_F-serratus_M_contig1182.1454.1 vs. uniprot
Match: A0A0M0KBI6_9EUKA (Ribosomal large subunit pseudouridine synthase d (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0KBI6_9EUKA)

HSP 1 Score: 102 bits (254), Expect = 3.540e-21
Identity = 71/177 (40.11%), Postives = 92/177 (51.98%), Query Frame = 0
Query:   93 FSGTRVGFHTLKEYQVPREAPTNLPDGEDRGYPMLLYQFMHAQYPEDFPSQSRSRKAVRRKELLFNGEEVRNDIKVQPGDVITSQKRVQPGLFPMGKPTCNFEVVWEDDFIAIINKPPGVAVHGGTGPEDPGPGGRRSVRQSLPYILT-PTKSEDSPLHRPLHCHRLDKPTGGLLVC 268
             S  R G+     Y VP   PT  P     G P  L + + A   + FP+ SR+RK +RR  ++ NG E R      PGD+I  Q+R  PG  P GKP    E+V++ +  AI+ KP GV  H    P   G  G +S+R ++ Y LT P       L+RP  CHRLDKPT GLLVC
Sbjct:    9 LSAVRPGYAIKAHYAVP---PTVQP-----GSP--LPEVLLACDEDLFPTLSRARKYLRRGAIIVNGAEARCISTASPGDMIELQERTAPGFMPRGKPPFPVEIVYDCNSFAIVFKPAGVVTH----PPPGGATGSQSMRTAIQYALTAPPIGMPGALYRPHLCHRLDKPTSGLLVC 171          
BLAST of mRNA_F-serratus_M_contig1182.1454.1 vs. uniprot
Match: A0A7S3UCU8_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UCU8_9CHLO)

HSP 1 Score: 90.1 bits (222), Expect = 2.020e-17
Identity = 65/182 (35.71%), Postives = 94/182 (51.65%), Query Frame = 0
Query:   91 EGFSGTRVGFHTLKEYQVPR-EAPTNLPDGEDRGYPMLLYQFMHAQYPEDFPSQSRSRKAVRRKELLFNGEEVRNDIKVQPGDVITSQKRVQPGLFPMGKP----TCNFEVVWEDDFIAIINKPPGVAVHGGTGPEDPGPGGRRSVRQSLPYILTPTKSEDSPLHRPLHCHRLDKPTGGLLV 267
            +G    R G+  ++E +VP  E    +P            Q + A  P+ F + + +RKA RR E+L  GE  R   +V+ GD I   +R      PM +P    T   EV +EDD +A++ KP G+AV G          G+ +++Q LPY+L P   + + LHRP H HRLD PTGGLL+
Sbjct:    3 KGARRMRRGYEVVEEAKVPAMEGGARMP------------QALLAAMPDRFETMTAARKACRRCEILVEGETTRCGDRVKIGDTIRWIRRSSNAPRPMCRPEPPETKLVEVAYEDDHLAVLVKPRGLAVQGR---------GKTTLQQLLPYLLQPAHVQGA-LHRPHHVHRLDMPTGGLLI 162          
BLAST of mRNA_F-serratus_M_contig1182.1454.1 vs. uniprot
Match: A0A8J9SN91_9CHLO (Probable ribosomal large subunit pseudouridine synthase D n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SN91_9CHLO)

HSP 1 Score: 82.0 bits (201), Expect = 5.420e-14
Identity = 66/186 (35.48%), Postives = 99/186 (53.23%), Query Frame = 0
Query:   86 GDVKDEGFSGTRVGFHTLKEYQVPREAPTNLPDGEDRGYPMLLYQFMHAQYPEDFPSQSRSRKAVRRKELLFNG--EEVRNDIKVQPGDVITSQKRVQPG--LFPMGKPTCNFEVVWEDDFIAIINKPPGVAVHGGTGPEDPGPGGRRSVRQSLPYILTPTKSEDSPLHRPLHCHRLDKPTGGLLV 267
            G+ +    S ++ G    +++ V   A   LPDG     P+ L Q +   +P+ FP+ + +++A RR E+L +G   +++    V  G +I  Q+R+Q G  L P   P    +VV+ED+ IA + KPPG+   G         GG + V  SL Y+LTP+    S L RP H HRLD PTGGLL+
Sbjct:  171 GEAESRQRSNSQQGGRVREDHAVVASAV--LPDG---CAPVSLPQAVAELFPQHFPTATSAKRACRRGEILVDGIVSKLKYQRLVYGGQLIEWQQRMQGGAQLQPDCAPAM-LQVVYEDEDIACVVKPPGMPTQG--------MGGVKDVVGSLGYLLTPSSKVGS-LWRPQHVHRLDAPTGGLLM 341          
BLAST of mRNA_F-serratus_M_contig1182.1454.1 vs. uniprot
Match: A0A6U4II29_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4II29_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.650e-13
Identity = 60/181 (33.15%), Postives = 90/181 (49.72%), Query Frame = 0
Query:   99 GFHTLKEYQVPREAPTNLPDGEDRGYPMLLYQFMHAQYPEDFPSQSRSRKAVRRKELLFNGEEVRNDIKVQPGDVITSQKRVQPGLFPMGKPTC--NFEVVWEDDFIAIINKPPGVAVHGGTGPEDPGPGG----------RRSVRQSLPYILTPTKSEDSPLHRPLHCHRLDKPTGGLLV 267
            GF    E++VP       P   +R    +L +   A    DFPS + +++ VRR+++  NG  V     V  GD +   +R+  GL P+ +        V++ED+ +A I KP G+ VH G G +  G  G          ++SVR  LP +L PT+ E   L RP+H HRLD  T G+L+
Sbjct:   50 GFTVADEWEVP-------PGCSERRITEVLMEHRAA----DFPSATAAKRLVRRRQIRVNGNVVGTTTNVAAGDFVQRLERLGAGLRPLQRSDVPDGMTVLYEDEHLAAIYKPAGIPVHSGGGGD--GSSGEEAKTTAYAPKKSVRTFLPSLLAPTE-EVGALRRPIHVHRLDAATSGVLL 216          
BLAST of mRNA_F-serratus_M_contig1182.1454.1 vs. uniprot
Match: A0A7S2Q4N2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q4N2_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.620e-13
Identity = 62/198 (31.31%), Postives = 97/198 (48.99%), Query Frame = 0
Query:   99 GFHTLKEYQVPREAPTNLPDG-EDRGYPMLLYQFMHAQYP--------EDFPSQSRSRKAVRRKELLF---NGEEVRNDI-----KVQPGDVITSQKRVQPGLF-----PMGKPTCNFEVVWEDDFIAIINKPPGVAVH---GGTGPEDPGPGGRRSVRQSLPYILTPTK----SEDSPLHRPLHCHRLDKPTGGLLV 267
            G+   K Y VP E   +L D  E      L  + M+   P        E +P+QSR+RKA+R++ +     N +   +++     +  PGD+I  Q+R     +     P   P  +  V++EDD +AI+NKP G+  +   G  G    G  GR ++  +LP +L P+      E+ P+ RP   HRLD+PT GL+V
Sbjct:   85 GYIVTKTYDVPIEGFPSLSDVFEPSDQERLQLEVMNVTLPAALMLLDPEKYPTQSRARKAIRQRAICICRRNSDSKFDELGKVIARAYPGDIIGYQQRGGSDYYSVQGTPYRLPAFDVPVIFEDDHVAIVNKPAGIVAYRAEGNRGGGSRGGHGRDTLISALPAVLKPSNIPITDENYPMKRPQPVHRLDRPTSGLVV 282          
BLAST of mRNA_F-serratus_M_contig1182.1454.1 vs. uniprot
Match: A0A7S3R3W7_DUNTE (Hypothetical protein (Fragment) n=2 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R3W7_DUNTE)

HSP 1 Score: 79.0 bits (193), Expect = 5.600e-13
Identity = 48/141 (34.04%), Postives = 76/141 (53.90%), Query Frame = 0
Query:  136 YPEDFPSQSRSRKAVRRKELLFNGEEVRNDIKVQPGDVITSQKRVQPGLFPMGKPTCN--------FEVVWEDDFIAIINKPPGVAVHGGTGPEDPGPGGRRSVRQSLPYILTPTKSEDSPLHRPLHCHRLDKPTGGLLVC 268
            +P+ F S + ++K  RRKE+L +G        VQPG+V+    R      P  + T           EV++EDD++A+I KPPG+   G          G+ +V++ + Y LTP+++  +  +RP + HRLD PT GL+VC
Sbjct:   61 FPDVFTSDTSAKKGCRRKEVLLDGNPATTTSVVQPGNVVQLIARAGNAGIPQPQKTWEQTAQDRPGLEVIFEDDYLAVIVKPPGLPTQGK---------GQDNVQKRIKYCLTPSRALGAS-NRPYNVHRLDAPTSGLMVC 191          
BLAST of mRNA_F-serratus_M_contig1182.1454.1 vs. uniprot
Match: I0YKT8_COCSC (PseudoU_synth_2 domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YKT8_COCSC)

HSP 1 Score: 78.2 bits (191), Expect = 9.130e-13
Identity = 63/177 (35.59%), Postives = 91/177 (51.41%), Query Frame = 0
Query:   94 SGTRVGFHTLKEYQVPREAPTNLPDGEDRGYPMLLYQFMHAQYPEDFPSQSRSRKAVRRKELLFNGE--EVRNDIKVQPGDVITSQKRVQPGLFPMGKPT-CNFEVVWEDDFIAIINKPPGVAVHGGTGPEDPGPGGRRSVRQSLPYILTPTKSEDSPLHRPLHCHRLDKPTGGLLV 267
            SG + G    ++Y V   A   LP G      + L Q +   +PE FP+ + +++A RR E+L +G   +++    V  G  +  Q+RVQ G     +      +VV+ED+ IA + KPPG+   G         GG + V  SL Y+LTP+    S L RP H HRLD PTGGLL+
Sbjct:   26 SGEQKGRKVREDYAVVASAV--LPPGSAA---VSLPQAVAELFPEHFPTATSAKRACRRGEILVDGSVSKLKYQRLVLAGQRLEWQQRVQGGAQLQAESAPAMLQVVYEDEHIACVVKPPGMPTQG--------MGGVKDVVGSLGYLLTPSSKVGS-LWRPQHVHRLDAPTGGLLM 188          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1182.1454.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPH2_9PHAE7.970e-9868.06PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A836CLS8_9STRA7.890e-2938.50Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A6V2ZI66_EMIHU6.390e-2238.59Hypothetical protein n=2 Tax=Emiliania huxleyi Tax... [more]
A0A0M0KBI6_9EUKA3.540e-2140.11Ribosomal large subunit pseudouridine synthase d (... [more]
A0A7S3UCU8_9CHLO2.020e-1735.71Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A8J9SN91_9CHLO5.420e-1435.48Probable ribosomal large subunit pseudouridine syn... [more]
A0A6U4II29_9STRA1.650e-1333.15Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2Q4N2_9STRA3.620e-1331.31Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S3R3W7_DUNTE5.600e-1334.04Hypothetical protein (Fragment) n=2 Tax=Dunaliella... [more]
I0YKT8_COCSC9.130e-1335.59PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.2350.10coord: 188..268
e-value: 5.7E-10
score: 41.0
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 145..268
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 193..267

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1182contigF-serratus_M_contig1182:189..21135 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1182.1454.1mRNA_F-serratus_M_contig1182.1454.1Fucus serratus malemRNAF-serratus_M_contig1182 188..21135 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1182.1454.1 ID=prot_F-serratus_M_contig1182.1454.1|Name=mRNA_F-serratus_M_contig1182.1454.1|organism=Fucus serratus male|type=polypeptide|length=268bp
SELVAPPAASAGRGRMGENCRSAWKTSMTSDMATEQMIPPVRLGKDDGRE
EEGVALRDDADKEANPSTPFTSKRKRRILGAGRRTGDVKDEGFSGTRVGF
HTLKEYQVPREAPTNLPDGEDRGYPMLLYQFMHAQYPEDFPSQSRSRKAV
RRKELLFNGEEVRNDIKVQPGDVITSQKRVQPGLFPMGKPTCNFEVVWED
DFIAIINKPPGVAVHGGTGPEDPGPGGRRSVRQSLPYILTPTKSEDSPLH
RPLHCHRLDKPTGGLLVC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom_sf