mRNA_F-serratus_M_contig1177.1427.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1177.1427.1
Unique NamemRNA_F-serratus_M_contig1177.1427.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1177.1427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1177contigF-serratus_M_contig1177:105740..106059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size320
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929078.051473-CDS-F-serratus_M_contig1177:105739..1060571622929078.051473-CDS-F-serratus_M_contig1177:105739..106057Fucus serratus maleCDSF-serratus_M_contig1177 105740..106057 +
1690962695.532223-CDS-F-serratus_M_contig1177:105739..1060571690962695.532223-CDS-F-serratus_M_contig1177:105739..106057Fucus serratus maleCDSF-serratus_M_contig1177 105740..106057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1177.1427.1prot_F-serratus_M_contig1177.1427.1Fucus serratus malepolypeptideF-serratus_M_contig1177 105740..106057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1177.1427.1

>prot_F-serratus_M_contig1177.1427.1 ID=prot_F-serratus_M_contig1177.1427.1|Name=mRNA_F-serratus_M_contig1177.1427.1|organism=Fucus serratus male|type=polypeptide|length=106bp
LYITSLPLALYINFVQSPQCNGYGTRLLLLYYRCLIRNGSAMERVKKKQL
SCQTTYYILWKKVYIIIKFVGLDVCKVIRTWYIQKRVRPPHHITIPHLMV
WRSSSH
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mRNA from alignment at F-serratus_M_contig1177:105740..106059+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1177.1427.1 ID=mRNA_F-serratus_M_contig1177.1427.1|Name=mRNA_F-serratus_M_contig1177.1427.1|organism=Fucus serratus male|type=mRNA|length=320bp|location=Sequence derived from alignment at F-serratus_M_contig1177:105740..106059+ (Fucus serratus male)
CTGTACATCACCAGCTTGCCATTAGCCCTGTATATAAATTTTGTGCAGAG
TCCCCAATGTAACGGCTATGGGACACGATTACTACTGCTGTACTACAGGT
GCTTGATACGCAACGGAAGTGCAATGGAGAGAGTAAAGAAGAAACAGCTG
TCGTGCCAGACAACATATTATATATTATGGAAAAAGGTCTACATAATTAT
CAAATTTGTAGGGCTCGATGTATGCAAGGTGATACGAACATGGTACATTC
AAAAGAGGGTGCGCCCACCCCACCACATAACCATCCCTCATTTGATGGTG
TGGCGCTCGAGCTCCCACAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1177:105740..106059+

>mRNA_F-serratus_M_contig1177.1427.1 ID=mRNA_F-serratus_M_contig1177.1427.1|Name=mRNA_F-serratus_M_contig1177.1427.1|organism=Fucus serratus male|type=CDS|length=636bp|location=Sequence derived from alignment at F-serratus_M_contig1177:105740..106059+ (Fucus serratus male)
CTGTACATCACCAGCTTGCCATTAGCCCTGTATATAAATTTTGTGCAGAG
TCCCCAATGTAACGGCTATGGGACACGATTACTACTGCTGTACTACAGGT
GCTTGATACGCAACGGAAGTGCAATGGAGAGAGTAAAGAAGAAACAGCTG
TCGTGCCAGACAACATATTATATATTATGGAAAAAGGTCTACATAATTAT
CAAATTTGTAGGGCTCGATGTATGCAAGGTGATACGAACATGGTACATTC
AAAAGAGGGTGCGCCCACCCCACCACATAACCATCCCTCATTTGATGGTG
TGGCGCTCGAGCTCCCACCTGTACATCACCAGCTTGCCATTAGCCCTGTA
TATAAATTTTGTGCAGAGTCCCCAATGTAACGGCTATGGGACACGATTAC
TACTGCTGTACTACAGGTGCTTGATACGCAACGGAAGTGCAATGGAGAGA
GTAAAGAAGAAACAGCTGTCGTGCCAGACAACATATTATATATTATGGAA
AAAGGTCTACATAATTATCAAATTTGTAGGGCTCGATGTATGCAAGGTGA
TACGAACATGGTACATTCAAAAGAGGGTGCGCCCACCCCACCACATAACC
ATCCCTCATTTGATGGTGTGGCGCTCGAGCTCCCAC
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