prot_F-serratus_M_contig1173.1420.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1173.1420.1
Unique Nameprot_F-serratus_M_contig1173.1420.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length155
Homology
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BLAST of mRNA_F-serratus_M_contig1173.1420.1 vs. uniprot
Match: F0W6E8_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6E8_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 7.160e-8
Identity = 35/116 (30.17%), Postives = 62/116 (53.45%), Query Frame = 0 
Query:   40 MMEVDKLAGDLHRLGDKSVTELRRCVIIVSGLSADYEMECRMLENNPDGLNMGEIERVVGNQYNRLLRQQQDSKALSASRGTITANRENGKNRRPSNKFEGKCFNCGKRGHRAVDC 155
            MM+ DKL  ++  + D  + +    VI++  L  D++   R+LE+ P G+++   +  +  ++ R+  ++    AL A+RG I+  +          +F GKCF CGKRGHR  +C
Sbjct:    4 MMKFDKLTMEIAAMED-GLNDQEMIVILLGSLPVDFDPIVRILESMP-GIDLISAKGTLQREWERMQNRESSEVALQATRGRISKKKYQRHPGTLGEEFNGKCFQCGKRGHRKNEC 117
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BLAST of mRNA_F-serratus_M_contig1173.1420.1 vs. uniprot
Match: F0X0S7_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X0S7_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.060e-6
Identity = 33/116 (28.45%), Postives = 59/116 (50.86%), Query Frame = 0 
Query:   40 MMEVDKLAGDLHRLGDKSVTELRRCVIIVSGLSADYEMECRMLENNPDGLNMGEIERVVGNQYNRLLRQQQDSKALSASRGTITANRENGKNRRPSNKFEGKCFNCGKRGHRAVDC 155
            MM+ DKL  ++  +GD  + +    VI++  L  +++   R+LEN   G+++   +     ++ R+  ++     L  +RG I+  +          +F GKCF CGKRGHR  +C
Sbjct:    4 MMKFDKLTMEMAAMGD-GLNDQEMLVILLGSLPLNFDPIVRILENIT-GIDLMSAKETPRREWGRIKNRESSEVTLEVTRGRISKKKYQRNPGTVGEEFNGKCFQCGKRGHRKYEC 117
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BLAST of mRNA_F-serratus_M_contig1173.1420.1 vs. uniprot
Match: A0A329S4C9_9STRA (CCHC-type domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S4C9_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.450e-6
Identity = 40/154 (25.97%), Postives = 74/154 (48.05%), Query Frame = 0 
Query:    2 AWRNLELHYRAKGTREILRLSHKINGKTMEPGSDPFKFMMEVDKLAGDLHRLGDKSVTELRRCVIIVSGLSADYEMECRMLENNPDGLNMGEIERVVGNQYNRLLRQQQDSKALSASRGTITANRENGKNRRPSNKFEGKCFNCGKRGHRAVDC 155
            AW  LE  +  +     + L+ K+N  T+  G + +  +    +L+  L   G+  + E R+ VI++  L  +Y +  +++E+   G+ M +   ++  +Y     +  +    SA        R+  KN +P +K  GKCFNCGK GH+  +C
Sbjct:   66 AWEVLEGFFNRQTMHNRVALNQKMNEFTLASGGNLYDHLTRFKELSTALAAAGEP-LDEQRQLVILLGNLPREYHVTVKIIESIA-GVTMLQAAEMLKREYAESRHEDTEVAFHSA--------RQRNKNTKPQSKCRGKCFNCGKIGHKEAEC 209
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1173.1420.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
F0W6E8_9STRA7.160e-830.17Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
F0X0S7_9STRA1.060e-628.45Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
A0A329S4C9_9STRA1.450e-625.97CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.60.10coord: 119..155
e-value: 4.2E-5
score: 25.4
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..104
e-value: 1.7E-9
score: 37.4
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 140..155
e-value: 2.3E-5
score: 24.2
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 141..155
score: 10.263
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 125..155

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1173contigF-serratus_M_contig1173:109945..110409 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1173.1420.1mRNA_F-serratus_M_contig1173.1420.1Fucus serratus malemRNAF-serratus_M_contig1173 109945..110409 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1173.1420.1 ID=prot_F-serratus_M_contig1173.1420.1|Name=mRNA_F-serratus_M_contig1173.1420.1|organism=Fucus serratus male|type=polypeptide|length=155bp
EAWRNLELHYRAKGTREILRLSHKINGKTMEPGSDPFKFMMEVDKLAGDL
HRLGDKSVTELRRCVIIVSGLSADYEMECRMLENNPDGLNMGEIERVVGN
QYNRLLRQQQDSKALSASRGTITANRENGKNRRPSNKFEGKCFNCGKRGH
RAVDC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf