mRNA_F-serratus_M_contig1173.1419.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1173.1419.1
Unique NamemRNA_F-serratus_M_contig1173.1419.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1173.1419.1 vs. uniprot
Match: A0A6H5JS58_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS58_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.800e-22
Identity = 56/126 (44.44%), Postives = 73/126 (57.94%), Query Frame = 1 
Query:   61 EETAAAMEAMANAKAVGSDDVPLGLLKLILRRNRTVLLELHRLTTLIWREGNVLHPLADVIITVLYKMGGKTEGGNYHDISLVSHTNKVRLEMVTRRLSDYCEAKGLLPEEQ*GFGPDRSITDMMF 438
            EE A A + + N KA G D +P  LLK I      VL  LH +   +W  G++     D  I VLYK G ++   NY  ISL+SH  KV ++++T RLS +CEA  +LPEEQ GF P RS  DM+F
Sbjct:   85 EEVARATKGLKNWKAPGHDSLPAELLK-IDDDEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKKGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLF 209
[Close]
BLAST of mRNA_F-serratus_M_contig1173.1419.1 vs. uniprot
Match: A0A6H5L788_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L788_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 7.210e-22
Identity = 55/126 (43.65%), Postives = 73/126 (57.94%), Query Frame = 1 
Query:   61 EETAAAMEAMANAKAVGSDDVPLGLLKLILRRNRTVLLELHRLTTLIWREGNVLHPLADVIITVLYKMGGKTEGGNYHDISLVSHTNKVRLEMVTRRLSDYCEAKGLLPEEQ*GFGPDRSITDMMF 438
            E  A A + + N KA G D +P  LLK I      VL  LH +   +W  G++     D  I VLYK G ++   NY  ISL+SH  KV ++++T RLS +CEA  +LPEEQ GF P+RS  DM+F
Sbjct:   63 EGVARATKGLKNWKAPGHDSLPAELLK-IDDDEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKKGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGFRPERSTVDMLF 187
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BLAST of mRNA_F-serratus_M_contig1173.1419.1 vs. uniprot
Match: A0A6H5KRC4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC4_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 7.640e-22
Identity = 56/126 (44.44%), Postives = 73/126 (57.94%), Query Frame = 1 
Query:   61 EETAAAMEAMANAKAVGSDDVPLGLLKLILRRNRTVLLELHRLTTLIWREGNVLHPLADVIITVLYKMGGKTEGGNYHDISLVSHTNKVRLEMVTRRLSDYCEAKGLLPEEQ*GFGPDRSITDMMF 438
            EE A A + + N KA G D +P  LLK I      VL  LH +   +W  G++     D  I VLYK G ++   NY  ISL+SH  KV ++++T RLS +CEA  +LPEEQ GF P RS  DM+F
Sbjct:  159 EEVARATKGLKNWKAPGHDSLPAELLK-IDDDEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKKGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLF 283
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BLAST of mRNA_F-serratus_M_contig1173.1419.1 vs. uniprot
Match: A0A6H5K5P0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5P0_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 9.330e-22
Identity = 55/126 (43.65%), Postives = 73/126 (57.94%), Query Frame = 1 
Query:   61 EETAAAMEAMANAKAVGSDDVPLGLLKLILRRNRTVLLELHRLTTLIWREGNVLHPLADVIITVLYKMGGKTEGGNYHDISLVSHTNKVRLEMVTRRLSDYCEAKGLLPEEQ*GFGPDRSITDMMF 438
            EE A A + + N KA G D +P  LLK I      VL  LH +   +W  G++     +  I VLYK G ++   NY  ISL+SH  KV ++++T RLS +CEA  +LPEEQ GF P RS  DM+F
Sbjct:   85 EEVARATKGLKNWKAPGHDSLPAELLK-IDDDEPFVLGHLHTILVKVWNGGDIPREWKNATIKVLYKKGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLF 209
[Close]
BLAST of mRNA_F-serratus_M_contig1173.1419.1 vs. uniprot
Match: A0A6H5J8W6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W6_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.380e-21
Identity = 55/126 (43.65%), Postives = 72/126 (57.14%), Query Frame = 1 
Query:   61 EETAAAMEAMANAKAVGSDDVPLGLLKLILRRNRTVLLELHRLTTLIWREGNVLHPLADVIITVLYKMGGKTEGGNYHDISLVSHTNKVRLEMVTRRLSDYCEAKGLLPEEQ*GFGPDRSITDMMF 438
            EE A A + + N KA G D +P  LLK I      VL  LH +   +W  G++     D  I VLYK G ++   NY  ISL+SH  KV ++++T RLS +CEA  +LPEE  GF P RS  DM+F
Sbjct:   85 EEVARATKGLKNWKAPGHDSLPAELLK-IDDDEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKKGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEYCGFRPGRSTVDMLF 209
[Close]
BLAST of mRNA_F-serratus_M_contig1173.1419.1 vs. uniprot
Match: A0A6H5JQV7_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV7_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 4.520e-21
Identity = 56/126 (44.44%), Postives = 73/126 (57.94%), Query Frame = 1 
Query:   61 EETAAAMEAMANAKAVGSDDVPLGLLKLILRRNRTVLLELHRLTTLIWREGNVLHPLADVIITVLYKMGGKTEGGNYHDISLVSHTNKVRLEMVTRRLSDYCEAKGLLPEEQ*GFGPDRSITDMMF 438
            EE A A + + N KA G D +P  LLK I      VL  LH +   +W  G++     D  I VLYK G ++   NY  ISL+SH  KV ++++T RLS +CEA  +LPEEQ GF P RS  DM+F
Sbjct:  308 EEVARATKGLKNWKAPGHDSLPAELLK-IDDDEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKKGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLF 432
[Close]
BLAST of mRNA_F-serratus_M_contig1173.1419.1 vs. uniprot
Match: A0A6H5JSW8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSW8_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 6.540e-21
Identity = 53/123 (43.09%), Postives = 70/123 (56.91%), Query Frame = 1 
Query:   70 AAAMEAMANAKAVGSDDVPLGLLKLILRRNRTVLLELHRLTTLIWREGNVLHPLADVIITVLYKMGGKTEGGNYHDISLVSHTNKVRLEMVTRRLSDYCEAKGLLPEEQ*GFGPDRSITDMMF 438
            A A + + N KA G D +P  LLK I      VL  LH +   +W  G++     D  I VLYK G ++   NY  ISL+S   KV ++++T RLS +CEA  +LPEEQ GF P RS  DM+F
Sbjct:    2 ARATQGLKNWKAPGHDSLPAELLK-IDEDEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKKGDRSNCNNYRGISLLSQVGKVPMKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLF 123
[Close]
BLAST of mRNA_F-serratus_M_contig1173.1419.1 vs. uniprot
Match: A0A6H5K8C3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8C3_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.250e-20
Identity = 55/125 (44.00%), Postives = 73/125 (58.40%), Query Frame = 1 
Query:   61 EETAAAMEAMANAKAVGSDDVPLGLLKLILRRNRTVLLELHRLTTLIWREGNVLHPLADVIITVLYKMGGKTEGGNYHDISLVSHTNKVRLEMVTRRLSDYCEAKGLLPEEQ*GFGPDRSITDMM 435
            EE A A + + N KA G D +P  LLK I      VL  LH +   +W  G++     D  I VLYK G ++   NY  ISL+SH  KV+++++T RLS +CEA  +LPEEQ GF P RS  DM+
Sbjct:  135 EEVARATKGLKNWKAPGHDSLPAELLK-IDDDEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKKGDRSNCNNYRGISLLSHVGKVQIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDML 258
[Close]
BLAST of mRNA_F-serratus_M_contig1173.1419.1 vs. uniprot
Match: A0A6H5JJX2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJX2_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.260e-20
Identity = 53/126 (42.06%), Postives = 71/126 (56.35%), Query Frame = 1 
Query:   61 EETAAAMEAMANAKAVGSDDVPLGLLKLILRRNRTVLLELHRLTTLIWREGNVLHPLADVIITVLYKMGGKTEGGNYHDISLVSHTNKVRLEMVTRRLSDYCEAKGLLPEEQ*GFGPDRSITDMMF 438
            EE A A + + N KA G D +P  LLK I      VL  LH +   +W  G++     D  I VLYK G ++   NY  +SL+SH  KV ++++T RLS +CEA  +LPEEQ G    RS  DM+F
Sbjct:   39 EEVARATKGLKNWKAPGHDSLPAELLK-IDDDEPFVLGHLHTILVKVWNGGDIPRERKDATIKVLYKKGDRSNCNNYRGVSLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGLRHGRSTVDMLF 163
[Close]
BLAST of mRNA_F-serratus_M_contig1173.1419.1 vs. uniprot
Match: A0A6H5KEB9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB9_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.270e-20
Identity = 55/126 (43.65%), Postives = 72/126 (57.14%), Query Frame = 1 
Query:   61 EETAAAMEAMANAKAVGSDDVPLGLLKLILRRNRTVLLELHRLTTLIWREGNVLHPLADVIITVLYKMGGKTEGGNYHDISLVSHTNKVRLEMVTRRLSDYCEAKGLLPEEQ*GFGPDRSITDMMF 438
            EE   A + + N KA G D +P  LLK I      VL  LH +   +W  G++     D  I VLYK G ++   NY  ISL+SH  KV ++++T RLS +CEA  +LPEEQ GF P RS  DM+F
Sbjct:   19 EEVGRATKGLKNWKAPGHDSLPAELLK-IDDDEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKKGDRSNCNNYRGISLLSHIGKVPIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLF 143
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1173.1419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JS58_9PHAE1.800e-2244.44Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L788_9PHAE7.210e-2243.65Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KRC4_9PHAE7.640e-2244.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K5P0_9PHAE9.330e-2243.65Reverse transcriptase domain-containing protein n=... [more]
A0A6H5J8W6_9PHAE3.380e-2143.65Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQV7_9PHAE4.520e-2144.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JSW8_9PHAE6.540e-2143.09Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K8C3_9PHAE1.250e-2044.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JJX2_9PHAE1.260e-2042.06Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KEB9_9PHAE1.270e-2043.65Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1173contigF-serratus_M_contig1173:47641..48078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.2
Seed ortholog evalue4e-07
Seed eggNOG ortholog13735.ENSPSIP00000000044
KEGG koko:K04257
KEGG Pathwayko04740,map04740
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39TZY@33154,3BI15@33208,3CYKV@33213,48M5V@7711,49KWC@7742,4CMN9@8459,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelTestudines
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04030
Exons1
Model size438
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1173.1419.1prot_F-serratus_M_contig1173.1419.1Fucus serratus malepolypeptideF-serratus_M_contig1173 47653..48039 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929077.104678-UTR-F-serratus_M_contig1173:47640..476521622929077.104678-UTR-F-serratus_M_contig1173:47640..47652Fucus serratus maleUTRF-serratus_M_contig1173 47641..47652 +
1690962695.0758572-UTR-F-serratus_M_contig1173:47640..476521690962695.0758572-UTR-F-serratus_M_contig1173:47640..47652Fucus serratus maleUTRF-serratus_M_contig1173 47641..47652 +
1622929077.13392-UTR-F-serratus_M_contig1173:48039..480781622929077.13392-UTR-F-serratus_M_contig1173:48039..48078Fucus serratus maleUTRF-serratus_M_contig1173 48040..48078 +
1690962695.095051-UTR-F-serratus_M_contig1173:48039..480781690962695.095051-UTR-F-serratus_M_contig1173:48039..48078Fucus serratus maleUTRF-serratus_M_contig1173 48040..48078 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929077.1202378-CDS-F-serratus_M_contig1173:47652..480391622929077.1202378-CDS-F-serratus_M_contig1173:47652..48039Fucus serratus maleCDSF-serratus_M_contig1173 47653..48039 +
1690962695.0857618-CDS-F-serratus_M_contig1173:47652..480391690962695.0857618-CDS-F-serratus_M_contig1173:47652..48039Fucus serratus maleCDSF-serratus_M_contig1173 47653..48039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1173.1419.1

>prot_F-serratus_M_contig1173.1419.1 ID=prot_F-serratus_M_contig1173.1419.1|Name=mRNA_F-serratus_M_contig1173.1419.1|organism=Fucus serratus male|type=polypeptide|length=129bp
MSQQPVASPLRIEPMEEETAAAMEAMANAKAVGSDDVPLGLLKLILRRNR
TVLLELHRLTTLIWREGNVLHPLADVIITVLYKMGGKTEGGNYHDISLVS
HTNKVRLEMVTRRLSDYCEAKGLLPEEQ*
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mRNA from alignment at F-serratus_M_contig1173:47641..48078+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1173.1419.1 ID=mRNA_F-serratus_M_contig1173.1419.1|Name=mRNA_F-serratus_M_contig1173.1419.1|organism=Fucus serratus male|type=mRNA|length=438bp|location=Sequence derived from alignment at F-serratus_M_contig1173:47641..48078+ (Fucus serratus male)
ATTCCCAAGAGGATGTCGCAGCAACCAGTCGCGAGTCCCCTCAGGATCGA
GCCCATGGAGGAGGAGACTGCCGCAGCGATGGAGGCAATGGCAAACGCGA
AAGCAGTGGGGTCTGACGACGTTCCCTTGGGACTACTGAAACTTATACTT
CGACGAAATCGAACTGTTCTGCTGGAGCTCCACCGACTTACCACTCTCAT
CTGGCGCGAGGGAAACGTTCTTCATCCATTAGCGGACGTAATCATTACCG
TGCTTTACAAAATGGGCGGCAAGACGGAGGGTGGAAACTACCACGACATC
TCGCTCGTGTCCCACACGAATAAGGTTCGCCTGGAAATGGTTACCAGGAG
ACTTAGCGACTACTGTGAGGCGAAGGGCCTATTACCGGAGGAGCAGTGAG
GGTTTGGACCGGATCGTTCCATCACGGATATGATGTTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1173:47641..48078+

>mRNA_F-serratus_M_contig1173.1419.1 ID=mRNA_F-serratus_M_contig1173.1419.1|Name=mRNA_F-serratus_M_contig1173.1419.1|organism=Fucus serratus male|type=CDS|length=774bp|location=Sequence derived from alignment at F-serratus_M_contig1173:47641..48078+ (Fucus serratus male)
ATGTCGCAGCAACCAGTCGCGAGTCCCCTCAGGATCGAGCCCATGGAGGA
GGAGACTGCCGCAGCGATGGAGGCAATGGCAAACGCGAAAGCAGTGGGGT
CTGACGACGTTCCCTTGGGACTACTGAAACTTATACTTCGACGAAATCGA
ACTGTTCTGCTGGAGCTCCACCGACTTACCACTCTCATCTGGCGCGAGGG
AAACGTTCTTCATCCATTAGCGGACGTAATCATTACCGTGCTTTACAAAA
TGGGCGGCAAGACGGAGGGTGGAAACTACCACGACATCTCGCTCGTGTCC
CACACGAATAAGGTTCGCCTGGAAATGGTTACCAGGAGACTTAGCGACTA
CTGTGAGGCGAAGGGCCTATTACCGGAGGAGCAGTGAATGTCGCAGCAAC
CAGTCGCGAGTCCCCTCAGGATCGAGCCCATGGAGGAGGAGACTGCCGCA
GCGATGGAGGCAATGGCAAACGCGAAAGCAGTGGGGTCTGACGACGTTCC
CTTGGGACTACTGAAACTTATACTTCGACGAAATCGAACTGTTCTGCTGG
AGCTCCACCGACTTACCACTCTCATCTGGCGCGAGGGAAACGTTCTTCAT
CCATTAGCGGACGTAATCATTACCGTGCTTTACAAAATGGGCGGCAAGAC
GGAGGGTGGAAACTACCACGACATCTCGCTCGTGTCCCACACGAATAAGG
TTCGCCTGGAAATGGTTACCAGGAGACTTAGCGACTACTGTGAGGCGAAG
GGCCTATTACCGGAGGAGCAGTGA
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