mRNA_F-serratus_M_contig1171.1413.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1171.1413.1
Unique NamemRNA_F-serratus_M_contig1171.1413.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1171.1413.1 vs. uniprot
Match: D7FMA0_ECTSI (Uridine kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMA0_ECTSI)

HSP 1 Score: 273 bits (697), Expect = 7.850e-88
Identity = 140/200 (70.00%), Postives = 168/200 (84.00%), Query Frame = 1
Query:   16 KCVVVGVAGGSGSGKTTLARALVTSLG-AENVTHISHDFYYRDLNHLRFEEREKINFDHPDALETSLLVKHLGELRAGRSVEIPIYDFTKQTRKTETRRVESKGVIIVEGILIFCHAELRDLLDVKIFVDTDADIRFIRRLRRDVAERSRTTESVVQQYLRTVRPMHELFVVPSKIYCDMVILDSLNSVVLDMVLARLRP 612
            K VVVG+AGGSGSGKTTL+RA+V +LG A  VT+I HD+YYRDL+HL  E+R K NFDHPDALETSLLVK L  L+AG + ++P+YDFT  +RK ET R E +GVIIVEGILIF HAELRDLLDVKIFVDT+ DIRFIRR++RD+AER+RT + VV QYL TVRPMHELFV PSK +CDM++ D LN VVL+M++A+LRP
Sbjct:    2 KPVVVGIAGGSGSGKTTLSRAVVEALGGARRVTYICHDYYYRDLSHLPIEQRAKTNFDHPDALETSLLVKQLEVLKAGGAADVPMYDFTVHSRKEETTRAEGRGVIIVEGILIFAHAELRDLLDVKIFVDTEPDIRFIRRMQRDIAERNRTADEVVAQYLATVRPMHELFVTPSKKFCDMIVPDGLNPVVLEMLVAKLRP 201          
BLAST of mRNA_F-serratus_M_contig1171.1413.1 vs. uniprot
Match: A0A3C0ZYX0_9CHLR (Uridine kinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3C0ZYX0_9CHLR)

HSP 1 Score: 244 bits (623), Expect = 8.820e-77
Identity = 123/198 (62.12%), Postives = 158/198 (79.80%), Query Frame = 1
Query:   16 KCVVVGVAGGSGSGKTTLARALVTSLGAENVTHISHDFYYRDLNHLRFEEREKINFDHPDALETSLLVKHLGELRAGRSVEIPIYDFTKQTRKTETRRVESKGVIIVEGILIFCHAELRDLLDVKIFVDTDADIRFIRRLRRDVAERSRTTESVVQQYLRTVRPMHELFVVPSKIYCDMVILDS-LNSVVLDMVLARL 606
            K +++GVAGG+GSGKTT++ A++  +G E +T+I HD YY+DL+HL  EER +INFDHPDAL+T+LLV+HL  L+ G  VE+PIYDFT  TR+ ETRRVES+GV +VEGILIF    LR+L+D+KIFVDTDADIRFIRRL+RD+ ER RT ESV++QYL TVRPMH  FV PSK Y D++I +   N   +DMV+AR+
Sbjct:    2 KPIIIGVAGGTGSGKTTVSEAILERVGRERITYIQHDSYYKDLSHLPLEERHRINFDHPDALDTNLLVEHLERLQTGSPVEVPIYDFTTHTRRRETRRVESRGVTLVEGILIFTDKALRELMDIKIFVDTDADIRFIRRLQRDITERGRTMESVIRQYLGTVRPMHLEFVEPSKRYADIIIPEGGFNVTAIDMVVARV 199          
BLAST of mRNA_F-serratus_M_contig1171.1413.1 vs. uniprot
Match: A0A7C7UZ41_9CHLR (Uridine kinase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C7UZ41_9CHLR)

HSP 1 Score: 243 bits (619), Expect = 4.930e-76
Identity = 122/203 (60.10%), Postives = 157/203 (77.34%), Query Frame = 1
Query:   22 VVVGVAGGSGSGKTTLARALVTSLGAENVTHISHDFYYRDLNHLRFEEREKINFDHPDALETSLLVKHLGELRAGRSVEIPIYDFTKQTRKTETRRVESKGVIIVEGILIFCHAELRDLLDVKIFVDTDADIRFIRRLRRDVAERSRTTESVVQQYLRTVRPMHELFVVPSKIYCDMVILDS-LNSVVLDMVLARLRPCLHST 627
            +++GVAGG+GSGKTT+++A++  +G + + +I HD YY+D +HL  EER KINFDHPDALET LLV+HL ELRAGR VE+P+YDFT  TR ++T+RVE + V++VEGILIF    LRD++DVKI+VDTDADIRFIRRL RD+ ER RT  SV+ QYL TVRPMH  FV PSK Y D++I +   N V LDMV+AR+   +  T
Sbjct:    9 IIIGVAGGTGSGKTTVSQAILDRVGRDRIAYIQHDSYYKDRSHLPLEERAKINFDHPDALETELLVQHLTELRAGRPVEVPVYDFTTHTRISQTQRVEPRRVVLVEGILIFADDALRDMMDVKIYVDTDADIRFIRRLERDITERGRTMRSVIDQYLSTVRPMHLEFVEPSKRYADVIIPEGGFNPVALDMVVARIEAMIEET 211          
BLAST of mRNA_F-serratus_M_contig1171.1413.1 vs. uniprot
Match: A0A497A690_9CHLR (Uridine kinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A497A690_9CHLR)

HSP 1 Score: 242 bits (617), Expect = 8.100e-76
Identity = 124/200 (62.00%), Postives = 159/200 (79.50%), Query Frame = 1
Query:   22 VVVGVAGGSGSGKTTLARALVTSLGAENVTHISHDFYYRDLNHLRFEEREKINFDHPDALETSLLVKHLGELRAGRSVEIPIYDFTKQTRKTETRRVESKGVIIVEGILIFCHAELRDLLDVKIFVDTDADIRFIRRLRRDVAERSRTTESVVQQYLRTVRPMHELFVVPSKIYCDMVILDS-LNSVVLDMVLARLRPCL 618
            +V+GVAGG+GSGKTT+A  ++  +GAE+V +I HD YYRDL+HL   +R ++NFDHPD+LET LL++HL ELRAGR+VEIPIYDFT  TR  ETRRVE   VI+VEGIL+F  ++LR+L DVK++VDTDAD+RFIRRLRRD+ ER RT +SV +QYL TVRPMH  FV PSK Y D++I +   N+V ++MV AR+R  L
Sbjct:    4 IVIGVAGGTGSGKTTVANQILRRVGAEHVAYIPHDAYYRDLSHLPPCQRAQVNFDHPDSLETELLIEHLKELRAGRAVEIPIYDFTTHTRMPETRRVEPAPVILVEGILVFAESQLRELFDVKLYVDTDADVRFIRRLRRDIEERGRTVDSVCEQYLSTVRPMHLEFVEPSKRYADVIIPEGGFNNVAIEMVAARIRGLL 203          
BLAST of mRNA_F-serratus_M_contig1171.1413.1 vs. uniprot
Match: A0A7C5EPG3_9CHLR (Uridine kinase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C5EPG3_9CHLR)

HSP 1 Score: 242 bits (617), Expect = 8.650e-76
Identity = 124/207 (59.90%), Postives = 159/207 (76.81%), Query Frame = 1
Query:   16 KCVVVGVAGGSGSGKTTLARALVTSLGAENVTHISHDFYYRDLNHLRFEEREKINFDHPDALETSLLVKHLGELRAGRSVEIPIYDFTKQTRKTETRRVESKGVIIVEGILIFCHAELRDLLDVKIFVDTDADIRFIRRLRRDVAERSRTTESVVQQYLRTVRPMHELFVVPSKIYCDMVILDS-LNSVVLDMVLARLRPCLHSTVP 633
            K ++VGVAGG+GSGKTT+A+A++  +G + + +I HD YYRDL+HL  EER ++NFDHPDALE  LLV+HL +L AGR  E+PIYDFT  TR+ ETR V    VI+VEGILIF    LRD++DVKIFVDTDADIRFIRRL+RD+AER RT ESV++QYL TVRPMH  FV PSK Y D++I +   N++ ++MV+AR+   L  + P
Sbjct:    2 KPIIVGVAGGTGSGKTTVAQAILERVGRDRIAYIQHDSYYRDLSHLPLEERARVNFDHPDALENELLVQHLRQLCAGRPAEVPIYDFTTHTRRPETRTVYPHRVILVEGILIFADKTLRDMMDVKIFVDTDADIRFIRRLQRDIAERGRTMESVIRQYLETVRPMHLEFVEPSKRYADVIIPEGGFNTIAVEMVVARILAMLEESSP 208          
BLAST of mRNA_F-serratus_M_contig1171.1413.1 vs. uniprot
Match: A0A7C1ZE33_9CHLR (Uridine kinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C1ZE33_9CHLR)

HSP 1 Score: 240 bits (613), Expect = 3.710e-75
Identity = 122/205 (59.51%), Postives = 158/205 (77.07%), Query Frame = 1
Query:   10 STKCVVVGVAGGSGSGKTTLARALVTSLGAENVTHISHDFYYRDLNHLRFEEREKINFDHPDALETSLLVKHLGELRAGRSVEIPIYDFTKQTRKTETRRVESKGVIIVEGILIFCHAELRDLLDVKIFVDTDADIRFIRRLRRDVAERSRTTESVVQQYLRTVRPMHELFVVPSKIYCDMVILDS-LNSVVLDMVLARLRPCLH 621
            S +C+++GVAGG+GSGKTT+A  ++  +GAE++ +I HD YYRDL+HL   +R ++NFDHPD+LET LL+KHL +LRAGR V IP+YDFT  TR + TR+V    VI+VEGIL+F  A LR+L DVK++VDTDADIR IRRL+RDV ER RT ESV+QQYL TVRPMH  FV PSK Y D++I +   N V ++MV AR+R  L+
Sbjct:    2 SKRCIIIGVAGGTGSGKTTVAMRILERVGAEHIAYIPHDAYYRDLSHLPPAQRTQVNFDHPDSLETELLIKHLRQLRAGRPVNIPVYDFTTHTRASRTRQVGPASVILVEGILVFAEAALRELFDVKLYVDTDADIRIIRRLQRDVQERGRTLESVIQQYLTTVRPMHLEFVEPSKRYADVIIPEGGFNEVAIEMVAARIRGLLN 206          
BLAST of mRNA_F-serratus_M_contig1171.1413.1 vs. uniprot
Match: A0A7V3NL73_9CHLR (Uridine kinase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7V3NL73_9CHLR)

HSP 1 Score: 237 bits (605), Expect = 6.160e-74
Identity = 118/196 (60.20%), Postives = 155/196 (79.08%), Query Frame = 1
Query:   22 VVVGVAGGSGSGKTTLARALVTSLGAENVTHISHDFYYRDLNHLRFEEREKINFDHPDALETSLLVKHLGELRAGRSVEIPIYDFTKQTRKTETRRVESKGVIIVEGILIFCHAELRDLLDVKIFVDTDADIRFIRRLRRDVAERSRTTESVVQQYLRTVRPMHELFVVPSKIYCDMVILDS-LNSVVLDMVLARL 606
            +++GVAGG+GSGKTT+A+ ++  +G + + +I HD YYRD +HL F ER ++N+DHPDALE+ LLV+HL +LRAG  VE+P+YDFT  TR+ ETRRVE + VI+VEGILIF    LR+++DVKIFVDTD DIRFIRRL+RD+ ER R+ ESV++QYL TVRPMH  FV PSK Y D++I +   N V LDMV+AR+
Sbjct:   11 IIIGVAGGTGSGKTTVAQEILQRVGPDRIAYIQHDSYYRDQSHLPFHERARVNYDHPDALESELLVEHLKQLRAGHPVEVPVYDFTTHTRRPETRRVEPRRVILVEGILIFADRALREMMDVKIFVDTDPDIRFIRRLQRDIRERGRSMESVIEQYLSTVRPMHMEFVEPSKRYADVIIPEGGFNVVALDMVVARI 206          
BLAST of mRNA_F-serratus_M_contig1171.1413.1 vs. uniprot
Match: A0A7V5DMD2_9CHLR (Uridine kinase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7V5DMD2_9CHLR)

HSP 1 Score: 237 bits (604), Expect = 7.400e-74
Identity = 122/200 (61.00%), Postives = 155/200 (77.50%), Query Frame = 1
Query:   22 VVVGVAGGSGSGKTTLARALVTSLGAENVTHISHDFYYRDLNHLRFEEREKINFDHPDALETSLLVKHLGELRAGRSVEIPIYDFTKQTRKTETRRVESKGVIIVEGILIFCHAELRDLLDVKIFVDTDADIRFIRRLRRDVAERSRTTESVVQQYLRTVRPMHELFVVPSKIYCDMVILDS-LNSVVLDMVLARLRPCL 618
            VV+GVAGGSGSGKTT+++A++  +G E + +I HD YYRD + L FEER ++N+DHPD+LE  LL++H+  LR GR+VEIPIYDFT  TR  ETR VE + V++VEGILIF    LRDL+DVKIFVDTD DIRFIRRL+RD++ER RT ESV QQYL TVRPMH  FV PSK Y D++I +   N++ +DMV+AR+   L
Sbjct:    4 VVIGVAGGSGSGKTTVSQAILDRVGRERIAYIQHDSYYRDRSDLPFEERTRLNYDHPDSLENELLIQHILALREGRAVEIPIYDFTTHTRLRETRTVEPRQVVLVEGILIFADKALRDLMDVKIFVDTDPDIRFIRRLKRDISERGRTMESVCQQYLETVRPMHLEFVEPSKRYADVIIPEGGFNTIAIDMVVARVESML 203          
BLAST of mRNA_F-serratus_M_contig1171.1413.1 vs. uniprot
Match: A0A497B2X9_9CHLR (Uridine kinase n=3 Tax=Chloroflexi TaxID=200795 RepID=A0A497B2X9_9CHLR)

HSP 1 Score: 236 bits (603), Expect = 9.170e-74
Identity = 120/201 (59.70%), Postives = 156/201 (77.61%), Query Frame = 1
Query:   22 VVVGVAGGSGSGKTTLARALVTSLGAENVTHISHDFYYRDLNHLRFEEREKINFDHPDALETSLLVKHLGELRAGRSVEIPIYDFTKQTRKTETRRVESKGVIIVEGILIFCHAELRDLLDVKIFVDTDADIRFIRRLRRDVAERSRTTESVVQQYLRTVRPMHELFVVPSKIYCDMVILDS-LNSVVLDMVLARLRPCLH 621
            ++VGVAGG+GSGKTT+A  ++  +GAE++ +I HD YYRDL+HL   +R ++NFDHP +LET LL++HL ELRAGR+VEIP YDFT  TR  +TRRVE + V+++EGIL+F   ELRDL DVK++VDTDAD+RFIRRLRRDV ER R+ ESV +QYL TVRPMH  FV PSK Y +++I +   N V ++MV AR+R  L 
Sbjct:    4 ILVGVAGGTGSGKTTVANEILRRVGAEHIAYIPHDAYYRDLSHLSPAQRAQVNFDHPSSLETELLIEHLRELRAGRAVEIPTYDFTTHTRTQQTRRVEPETVVLIEGILVFVELELRDLFDVKLYVDTDADVRFIRRLRRDVEERGRSVESVCEQYLSTVRPMHLEFVEPSKRYANVIIPEGGFNEVAIEMVAARIRGMLE 204          
BLAST of mRNA_F-serratus_M_contig1171.1413.1 vs. uniprot
Match: A0A212RNW4_9CHLR (Uridine kinase n=2 Tax=Thermoflexus TaxID=1495649 RepID=A0A212RNW4_9CHLR)

HSP 1 Score: 236 bits (603), Expect = 9.800e-74
Identity = 121/201 (60.20%), Postives = 154/201 (76.62%), Query Frame = 1
Query:   22 VVVGVAGGSGSGKTTLARALVTSLGAENVTHISHDFYYRDLNHLRFEEREKINFDHPDALETSLLVKHLGELRAGRSVEIPIYDFTKQTRKTETRRVESKGVIIVEGILIFCHAELRDLLDVKIFVDTDADIRFIRRLRRDVAERSRTTESVVQQYLRTVRPMHELFVVPSKIYCDMVILDS-LNSVVLDMVLARLRPCLH 621
            VV+G+AGG+GSGKTT+A A+V  +G E +  I  D YY+D +HL  EER +IN+DHP++++T+LL++HL EL AGR VE+PIYDFT  TR   TRRVE + VI+VEGIL+F    LRDL D+KI+VD D DIRFIRRLRRD+AER RT ESV+QQYL TVRPMH  FV PSK Y D++I +   N+V LDM++AR+R  L 
Sbjct:    6 VVIGIAGGTGSGKTTVAEAIVRRIGPERIALIQQDSYYKDQSHLPIEERVRINYDHPESIDTALLIRHLQELIAGRPVEVPIYDFTTYTRTPHTRRVEPRPVILVEGILVFVEKALRDLFDIKIYVDADPDIRFIRRLRRDLAERGRTLESVIQQYLSTVRPMHLEFVEPSKRYADIIIPEGGFNTVALDMIIARIRALLE 206          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1171.1413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMA0_ECTSI7.850e-8870.00Uridine kinase n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A0A3C0ZYX0_9CHLR8.820e-7762.12Uridine kinase n=1 Tax=Chloroflexi bacterium TaxID... [more]
A0A7C7UZ41_9CHLR4.930e-7660.10Uridine kinase n=1 Tax=Anaerolineae bacterium TaxI... [more]
A0A497A690_9CHLR8.100e-7662.00Uridine kinase n=1 Tax=Chloroflexi bacterium TaxID... [more]
A0A7C5EPG3_9CHLR8.650e-7659.90Uridine kinase n=1 Tax=Anaerolineae bacterium TaxI... [more]
A0A7C1ZE33_9CHLR3.710e-7559.51Uridine kinase n=1 Tax=Chloroflexi bacterium TaxID... [more]
A0A7V3NL73_9CHLR6.160e-7460.20Uridine kinase n=1 Tax=Anaerolineae bacterium TaxI... [more]
A0A7V5DMD2_9CHLR7.400e-7461.00Uridine kinase n=1 Tax=Anaerolineae bacterium TaxI... [more]
A0A497B2X9_9CHLR9.170e-7459.70Uridine kinase n=3 Tax=Chloroflexi TaxID=200795 Re... [more]
A0A212RNW4_9CHLR9.800e-7460.20Uridine kinase n=2 Tax=Thermoflexus TaxID=1495649 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1171contigF-serratus_M_contig1171:32564..34547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score277.3
Seed ortholog evalue6.1e-72
Seed eggNOG ortholog2880.D7FMA0
KEGG rclassRC00002,RC00017
KEGG koko:K00876
KEGG ReactionR00513,R00516,R00517,R00962,R00964,R00967,R00968,R00970,R01548,R01549,R01880,R02091,R02096,R02097,R02327,R02332,R02371,R02372,R08232
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.UMP salvage
EggNOG OGsCOG0572@1,KOG4203@2759
EC2.7.1.48
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons4
Model size1092
Cds size666
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1171.1413.1prot_F-serratus_M_contig1171.1413.1Fucus serratus malepolypeptideF-serratus_M_contig1171 32567..34124 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929076.5862556-UTR-F-serratus_M_contig1171:32563..325661622929076.5862556-UTR-F-serratus_M_contig1171:32563..32566Fucus serratus maleUTRF-serratus_M_contig1171 32564..32566 +
1690962694.8053207-UTR-F-serratus_M_contig1171:32563..325661690962694.8053207-UTR-F-serratus_M_contig1171:32563..32566Fucus serratus maleUTRF-serratus_M_contig1171 32564..32566 +
1622929076.6583183-UTR-F-serratus_M_contig1171:34124..345471622929076.6583183-UTR-F-serratus_M_contig1171:34124..34547Fucus serratus maleUTRF-serratus_M_contig1171 34125..34547 +
1690962694.8595562-UTR-F-serratus_M_contig1171:34124..345471690962694.8595562-UTR-F-serratus_M_contig1171:34124..34547Fucus serratus maleUTRF-serratus_M_contig1171 34125..34547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929076.6003973-CDS-F-serratus_M_contig1171:32566..328711622929076.6003973-CDS-F-serratus_M_contig1171:32566..32871Fucus serratus maleCDSF-serratus_M_contig1171 32567..32871 +
1690962694.8221757-CDS-F-serratus_M_contig1171:32566..328711690962694.8221757-CDS-F-serratus_M_contig1171:32566..32871Fucus serratus maleCDSF-serratus_M_contig1171 32567..32871 +
1622929076.6168604-CDS-F-serratus_M_contig1171:33149..332461622929076.6168604-CDS-F-serratus_M_contig1171:33149..33246Fucus serratus maleCDSF-serratus_M_contig1171 33150..33246 +
1690962694.8319805-CDS-F-serratus_M_contig1171:33149..332461690962694.8319805-CDS-F-serratus_M_contig1171:33149..33246Fucus serratus maleCDSF-serratus_M_contig1171 33150..33246 +
1622929076.630554-CDS-F-serratus_M_contig1171:33459..335911622929076.630554-CDS-F-serratus_M_contig1171:33459..33591Fucus serratus maleCDSF-serratus_M_contig1171 33460..33591 +
1690962694.8411005-CDS-F-serratus_M_contig1171:33459..335911690962694.8411005-CDS-F-serratus_M_contig1171:33459..33591Fucus serratus maleCDSF-serratus_M_contig1171 33460..33591 +
1622929076.6437542-CDS-F-serratus_M_contig1171:33992..341241622929076.6437542-CDS-F-serratus_M_contig1171:33992..34124Fucus serratus maleCDSF-serratus_M_contig1171 33993..34124 +
1690962694.8501592-CDS-F-serratus_M_contig1171:33992..341241690962694.8501592-CDS-F-serratus_M_contig1171:33992..34124Fucus serratus maleCDSF-serratus_M_contig1171 33993..34124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1171.1413.1

>prot_F-serratus_M_contig1171.1413.1 ID=prot_F-serratus_M_contig1171.1413.1|Name=mRNA_F-serratus_M_contig1171.1413.1|organism=Fucus serratus male|type=polypeptide|length=222bp
MASTKCVVVGVAGGSGSGKTTLARALVTSLGAENVTHISHDFYYRDLNHL
RFEEREKINFDHPDALETSLLVKHLGELRAGRSVEIPIYDFTKQTRKTET
RRVESKGVIIVEGILIFCHAELRDLLDVKIFVDTDADIRFIRRLRRDVAE
RSRTTESVVQQYLRTVRPMHELFVVPSKIYCDMVILDSLNSVVLDMVLAR
LRPCLHSTVPTEGARPPEESS*
back to top

mRNA from alignment at F-serratus_M_contig1171:32564..34547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1171.1413.1 ID=mRNA_F-serratus_M_contig1171.1413.1|Name=mRNA_F-serratus_M_contig1171.1413.1|organism=Fucus serratus male|type=mRNA|length=1984bp|location=Sequence derived from alignment at F-serratus_M_contig1171:32564..34547+ (Fucus serratus male)
AAGATGGCGTCTACAAAGTGCGTCGTGGTCGGGGTCGCAGGGGGCTCTGG ATCGGGCAAGACCACGCTGGCGCGGGCTCTGGTGACATCTCTAGGCGCGG AGAACGTGACGCACATCTCCCACGACTTCTACTACCGAGACCTGAACCAT TTACGCTTCGAGGAGAGAGAGAAGATTAACTTCGATCACCCGGACGCGCT GGAGACATCCTTACTCGTGAAGCACCTGGGCGAGCTTAGGGCTGGCAGGT CGGTCGAGATACCGATCTACGACTTCACGAAACAAACGAGAAAGACCGAG ACAAGAAGGTGGGGGTGGGGGTGGGGGTGATGTTCTTCTCTCGCGCAAAT CTCACCAAACTGTTGGCTGCATCGAGCTGTGTCGTCCCGGTAGCAACACG TACCTCGAGAGGTTCTTTGTCGTAACTGTAGGTTGCATCGAGCTGTTGCC CACACACACCCTCGTGGTGCATCGAGTGCAGAGCCGCCGTAGGTTGTGCT GTAGAGGCCGTGTCGTGTTTTAGCGGCTGGCACTTTACCCTGTCACTACC CGTATCCTATATCATGCCACCCGCGCTGCTGTCAAGGGTGGAGAGCAAGG GAGTCATTATAGTGGAAGGCATTCTAATCTTCTGCCACGCGGAGCTGAGA GATCTTTTGGACGTGAAGATCTTCGTGGACACGGTAACTGGAACTGGAAC TGTCGTGTATGGCGTTGGTTGTGCGGTGCACCTTCCTTGACCTTGACCGT GCTGTCTCTCGTGTTACCACGATAGCCCCCTCTGTCCCAACAGACACGTG CCCGTGGATACTGCGCTCGAAATCGTTGTGGCTCACACGAGTAGCCCGAC CTCCTGTTATTCTTGCTCTTGTGCGCGTGTCTCTCTTGCCTCACAGGATG CCGACATCCGTTTCATCAGGCGATTGCGGAGGGACGTAGCGGAACGCAGT CGCACGACTGAGAGCGTTGTACAGCAGTACTTGAGGACGGTCAGGCCCAT GCACGAGCTGTTTGTGGTACCGTCCAAGGTGCGAAGTGGGTACAATCGTG ACGTTGGACAATCGCGACTTGACTGTGATGGCACGCATGATCAATCCGTT CTCAAGAACCGATCGAACAACAACGGTACAGTACAGTACGTACGAATACC GCCTCTCAGGTCTCTACGTAATCCCAGAATACGTCTCTTGCCGCTCTTCT CCCTTCAAGGCAGGCGAGTTGCCACCGAACGCCTGACCAAGGGGGCGAAA CCGTAGCCAGAGCTGACCGGCCGCGACGAAAACCGTTTTGCATTAATCAT TAATGGTATAAGTATGTCAATTCATAGAAGTATTATTGATGGTGGTTACA CAGACGAAAATTATCCTGACCATTATCTCTCCTCGGACACTTTTCGAATG GTGATGTCATCCTGGACATGGTCATACAGATATACTGCGACATGGTCATC CTGGACAGCTTGAATTCGGTCGTTCTCGACATGGTTTTGGCGAGGCTCCG ACCGTGTCTTCACTCAACGGTACCAACCGAAGGAGCACGCCCGCCGGAGG AATCTTCGTGAAGCTTCACAGTATCGAGTGCCGTTGGGTCATACGTTGAA TAAAATTAAGCTTTTCCGGTTCCTTTGTTGGAATCCTCTCCCAGAAGCGC ACCTCTGAGCTCCTGCCACCCAGAGACTTGCGTTCTAGAGCTTTGGGTTG CCGAAGCGCGCCTCTTGGGTTTTGACACCCACTTCAAGCTACTTTTTAGA GCGAAGTGGTTCGAACTTAGAGCTTCCCCGAGTTGAAGTCGCGTATTGTT TTGGGCGGCGTACGCTGACAGCACGGGAAAACATGCCATGCACCAAACCC CTGTAGATTTTGTTGCTATAATAGTAGTTGATGGTCGGGTGACCAGATAA ATGGCGTCTGCTCACGTCATGCACCAAACCCCTGCAGATTTTGTTGCTAG TTGGTGGTCTGGTGACCAGATAAATGGCGTCGGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1171:32564..34547+

>mRNA_F-serratus_M_contig1171.1413.1 ID=mRNA_F-serratus_M_contig1171.1413.1|Name=mRNA_F-serratus_M_contig1171.1413.1|organism=Fucus serratus male|type=CDS|length=1332bp|location=Sequence derived from alignment at F-serratus_M_contig1171:32564..34547+ (Fucus serratus male)
ATGGCGTCTACAAAGTGCGTCGTGGTCGGGGTCGCAGGGGGCTCTGGATC
GGGCAAGACCACGCTGGCGCGGGCTCTGGTGACATCTCTAGGCGCGGAGA
ACGTGACGCACATCTCCCACGACTTCTACTACCGAGACCTGAACCATTTA
CGCTTCGAGGAGAGAGAGAAGATTAACTTCGATCACCCGGACGCGCTGGA
GACATCCTTACTCGTGAAGCACCTGGGCGAGCTTAGGGCTGGCAGGTCGG
TCGAGATACCGATCTACGACTTCACGAAACAAACGAGAAAGACCGAGACA
AGAAGATGGCGTCTACAAAGTGCGTCGTGGTCGGGGTCGCAGGGGGCTCT
GGATCGGGCAAGACCACGCTGGCGCGGGCTCTGGTGACATCTCTAGGCGC
GGAGAACGTGACGCACATCTCCCACGACTTCTACTACCGAGACCTGAACC
ATTTACGCTTCGAGGAGAGAGAGAAGATTAACTTCGATCACCCGGACGCG
CTGGAGACATCCTTACTCGTGAAGCACCTGGGCGAGCTTAGGGCTGGCAG
GTCGGTCGAGATACCGATCTACGACTTCACGAAACAAACGAGAAAGACCG
AGACAAGAAGGGTGGAGAGCAAGGGAGTCATTATAGTGGAAGGCATTCTA
ATCTTCTGCCACGCGGAGCTGAGAGATCTTTTGGACGTGAAGATCTTCGT
GGACACGGGTGGAGAGCAAGGGAGTCATTATAGTGGAAGGCATTCTAATC
TTCTGCCACGCGGAGCTGAGAGATCTTTTGGACGTGAAGATCTTCGTGGA
CACGGATGCCGACATCCGTTTCATCAGGCGATTGCGGAGGGACGTAGCGG
AACGCAGTCGCACGACTGAGAGCGTTGTACAGCAGTACTTGAGGACGGTC
AGGCCCATGCACGAGCTGTTTGTGGTACCGTCCAAGGATGCCGACATCCG
TTTCATCAGGCGATTGCGGAGGGACGTAGCGGAACGCAGTCGCACGACTG
AGAGCGTTGTACAGCAGTACTTGAGGACGGTCAGGCCCATGCACGAGCTG
TTTGTGGTACCGTCCAAGATATACTGCGACATGGTCATCCTGGACAGCTT
GAATTCGGTCGTTCTCGACATGGTTTTGGCGAGGCTCCGACCGTGTCTTC
ACTCAACGGTACCAACCGAAGGAGCACGCCCGCCGGAGGAATCTTCGTGA
ATATACTGCGACATGGTCATCCTGGACAGCTTGAATTCGGTCGTTCTCGA
CATGGTTTTGGCGAGGCTCCGACCGTGTCTTCACTCAACGGTACCAACCG
AAGGAGCACGCCCGCCGGAGGAATCTTCGTGA
back to top