mRNA_F-serratus_M_contig117.1409.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig117.1409.1
Unique NamemRNA_F-serratus_M_contig117.1409.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig117.1409.1 vs. uniprot
Match: A0A6H5KCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG1_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 8.650e-29
Identity = 73/167 (43.71%), Postives = 101/167 (60.48%), Query Frame = 1 
Query:    1 LPPVRAKGDGERVSIDEYEGYGTFPAVGVARVSHPKGFEPLKLQLGFAPGLGALVVCELGARQRVTREVVCRH-IAPGAVDSKPVARGAKVKNEGATVVSISGEAIRG---IDSNKQMEADGANMASARLGSGSLRICSFVLGRFGMYRLSFRHEVGASLTVLVCPP 489
            LPP+R K  G+ +++DE   +     V V  VSH +GFEP  L++GFAPGLGA V+C+L ++QRVTREVVCR  +      SK V  G++    G   VSI   AIRG    + +   + D  N+ SARLG G L  C F+LGR+G YR+S+R +    ++V+V  P
Sbjct: 1287 LPPIRVKQGGDGLTLDELAEHSALHGVHVVNVSHRRGFEPAALEVGFAPGLGACVMCDLDSQQRVTREVVCRRLVGREGKSSKEV--GSRSVVGGLGDVSIGHGAIRGNEGAEDDAGEDEDDPNVKSARLGPGILNKCYFMLGRYGDYRISYRGDASRGVSVVVRLP 1451
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig117.1409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KCG1_9PHAE8.650e-2943.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig117contigF-serratus_M_contig117:821791..822279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929075.9774628-CDS-F-serratus_M_contig117:821790..8222791622929075.9774628-CDS-F-serratus_M_contig117:821790..822279Fucus serratus maleCDSF-serratus_M_contig117 821791..822279 -
1690962694.4705017-CDS-F-serratus_M_contig117:821790..8222791690962694.4705017-CDS-F-serratus_M_contig117:821790..822279Fucus serratus maleCDSF-serratus_M_contig117 821791..822279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig117.1409.1prot_F-serratus_M_contig117.1409.1Fucus serratus malepolypeptideF-serratus_M_contig117 821791..822279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig117.1409.1

>prot_F-serratus_M_contig117.1409.1 ID=prot_F-serratus_M_contig117.1409.1|Name=mRNA_F-serratus_M_contig117.1409.1|organism=Fucus serratus male|type=polypeptide|length=163bp
LPPVRAKGDGERVSIDEYEGYGTFPAVGVARVSHPKGFEPLKLQLGFAPG
LGALVVCELGARQRVTREVVCRHIAPGAVDSKPVARGAKVKNEGATVVSI
SGEAIRGIDSNKQMEADGANMASARLGSGSLRICSFVLGRFGMYRLSFRH
EVGASLTVLVCPP
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mRNA from alignment at F-serratus_M_contig117:821791..822279-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig117.1409.1 ID=mRNA_F-serratus_M_contig117.1409.1|Name=mRNA_F-serratus_M_contig117.1409.1|organism=Fucus serratus male|type=mRNA|length=489bp|location=Sequence derived from alignment at F-serratus_M_contig117:821791..822279- (Fucus serratus male)
CTTCCACCGGTGCGCGCGAAGGGAGACGGGGAGAGAGTGAGCATCGATGA
GTATGAGGGCTACGGCACGTTCCCCGCCGTGGGAGTTGCTCGCGTTTCCC
ACCCGAAGGGCTTTGAACCGTTGAAGCTGCAGCTGGGGTTCGCGCCAGGA
CTCGGTGCGCTTGTCGTCTGTGAGCTTGGTGCTCGACAGCGCGTCACTCG
TGAAGTCGTGTGCCGCCATATCGCTCCCGGAGCAGTGGACAGCAAGCCAG
TAGCTCGCGGGGCAAAAGTAAAAAATGAAGGTGCAACCGTCGTGAGCATT
TCTGGAGAGGCGATACGTGGTATCGATTCGAACAAACAGATGGAAGCGGA
CGGGGCTAACATGGCCTCCGCCCGCCTTGGCTCCGGTTCCCTCAGGATCT
GCTCGTTCGTTTTGGGACGATTTGGAATGTATCGACTGTCTTTCCGCCAT
GAAGTCGGCGCAAGTCTCACTGTTCTTGTCTGCCCGCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig117:821791..822279-

>mRNA_F-serratus_M_contig117.1409.1 ID=mRNA_F-serratus_M_contig117.1409.1|Name=mRNA_F-serratus_M_contig117.1409.1|organism=Fucus serratus male|type=CDS|length=978bp|location=Sequence derived from alignment at F-serratus_M_contig117:821791..822279- (Fucus serratus male)
CTTCCACCGGTGCGCGCGAAGGGAGACGGGGAGAGAGTGAGCATCGATGA
GTATGAGGGCTACGGCACGTTCCCCGCCGTGGGAGTTGCTCGCGTTTCCC
ACCCGAAGGGCTTTGAACCGTTGAAGCTGCAGCTGGGGTTCGCGCCAGGA
CTCGGTGCGCTTGTCGTCTGTGAGCTTGGTGCTCGACAGCGCGTCACTCG
TGAAGTCGTGTGCCGCCATATCGCTCCCGGAGCAGTGGACAGCAAGCCAG
TAGCTCGCGGGGCAAAAGTAAAAAATGAAGGTGCAACCGTCGTGAGCATT
TCTGGAGAGGCGATACGTGGTATCGATTCGAACAAACAGATGGAAGCGGA
CGGGGCTAACATGGCCTCCGCCCGCCTTGGCTCCGGTTCCCTCAGGATCT
GCTCGTTCGTTTTGGGACGATTTGGAATGTATCGACTGTCTTTCCGCCAT
GAAGTCGGCGCAAGTCTCACTGTTCTTGTCTGCCCGCCGCTTCCACCGGT
GCGCGCGAAGGGAGACGGGGAGAGAGTGAGCATCGATGAGTATGAGGGCT
ACGGCACGTTCCCCGCCGTGGGAGTTGCTCGCGTTTCCCACCCGAAGGGC
TTTGAACCGTTGAAGCTGCAGCTGGGGTTCGCGCCAGGACTCGGTGCGCT
TGTCGTCTGTGAGCTTGGTGCTCGACAGCGCGTCACTCGTGAAGTCGTGT
GCCGCCATATCGCTCCCGGAGCAGTGGACAGCAAGCCAGTAGCTCGCGGG
GCAAAAGTAAAAAATGAAGGTGCAACCGTCGTGAGCATTTCTGGAGAGGC
GATACGTGGTATCGATTCGAACAAACAGATGGAAGCGGACGGGGCTAACA
TGGCCTCCGCCCGCCTTGGCTCCGGTTCCCTCAGGATCTGCTCGTTCGTT
TTGGGACGATTTGGAATGTATCGACTGTCTTTCCGCCATGAAGTCGGCGC
AAGTCTCACTGTTCTTGTCTGCCCGCCG
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