mRNA_F-serratus_M_contig117.1402.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig117.1402.1
Unique Name	mRNA_F-serratus_M_contig117.1402.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig117.1402.1 vs. uniprot
Match: D7G1A0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1A0_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.520e-20
Identity = 48/94 (51.06%), Postives = 61/94 (64.89%), Query Frame = 2

Query:  374 ARSAWPRNARGDKEENDEPNLPGSGLRGVDTSYLEGSEKANAEWFQRTAEREARGELAWYEDPVIYIAILGLVPLLILAWGVVNCYVPGFCESS 655
            A SA  R   GD + +    L GSGLRGVDTS L G+EK +A+WF RT  RE    L W+EDPV Y+ +  +VP++ L WG +NCYVPG C S+
Sbjct:   23 ATSATKRGKEGDDDGDRIDMLTGSGLRGVDTSKLTGNEKRDADWFLRTNSRE----LVWFEDPVFYLGLCLIVPVVGLVWGALNCYVPGICPST 112

[Close]

BLAST of mRNA_F-serratus_M_contig117.1402.1 vs. uniprot
Match: A0A6H5KI54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI54_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 8.090e-18
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = 2

Query:  434 LPGSGLRGVDTSYLEGSEKANAEWFQRTAEREARGELAWYEDPVIYIAILGLVPLLILAWGVVNCYVPGFCESS 655
            L GSGLRGVDTS L G+EK +A+WF RT  RE    L W+EDPV Y+ +  +VP++ L WG  NCYVPG C ++
Sbjct:   99 LTGSGLRGVDTSKLTGNEKRDADWFLRTNSRE----LVWFEDPVFYLGLCLIVPVVGLVWGAFNCYVPGICPAT 168

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig117.1402.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig117.1402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G1A0_ECTSI	2.520e-20	51.06	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KI54_9PHAE	8.090e-18	55.41	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig117	contig	F-serratus_M_contig117:708528..711251 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	chloroplast
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-12_005270.1
Exons	4
Model size	997
Cds size	522
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig117.1402.1	prot_F-serratus_M_contig117.1402.1	Fucus serratus male	polypeptide	F-serratus_M_contig117 710360..710881 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929075.0567434-UTR-F-serratus_M_contig117:708527..708640	1622929075.0567434-UTR-F-serratus_M_contig117:708527..708640	Fucus serratus male	UTR	F-serratus_M_contig117 708528..708640 +
1690962694.0305004-UTR-F-serratus_M_contig117:708527..708640	1690962694.0305004-UTR-F-serratus_M_contig117:708527..708640	Fucus serratus male	UTR	F-serratus_M_contig117 708528..708640 +
1622929075.0698628-UTR-F-serratus_M_contig117:710333..710359	1622929075.0698628-UTR-F-serratus_M_contig117:710333..710359	Fucus serratus male	UTR	F-serratus_M_contig117 710334..710359 +
1690962694.0399048-UTR-F-serratus_M_contig117:710333..710359	1690962694.0399048-UTR-F-serratus_M_contig117:710333..710359	Fucus serratus male	UTR	F-serratus_M_contig117 710334..710359 +
1622929075.0943565-UTR-F-serratus_M_contig117:710881..710969	1622929075.0943565-UTR-F-serratus_M_contig117:710881..710969	Fucus serratus male	UTR	F-serratus_M_contig117 710882..710969 +
1690962694.057296-UTR-F-serratus_M_contig117:710881..710969	1690962694.057296-UTR-F-serratus_M_contig117:710881..710969	Fucus serratus male	UTR	F-serratus_M_contig117 710882..710969 +
1622929075.10773-UTR-F-serratus_M_contig117:710985..711184	1622929075.10773-UTR-F-serratus_M_contig117:710985..711184	Fucus serratus male	UTR	F-serratus_M_contig117 710986..711184 +
1690962694.064852-UTR-F-serratus_M_contig117:710985..711184	1690962694.064852-UTR-F-serratus_M_contig117:710985..711184	Fucus serratus male	UTR	F-serratus_M_contig117 710986..711184 +
1622929075.227445-UTR-F-serratus_M_contig117:711202..711251	1622929075.227445-UTR-F-serratus_M_contig117:711202..711251	Fucus serratus male	UTR	F-serratus_M_contig117 711203..711251 +
1690962694.0749276-UTR-F-serratus_M_contig117:711202..711251	1690962694.0749276-UTR-F-serratus_M_contig117:711202..711251	Fucus serratus male	UTR	F-serratus_M_contig117 711203..711251 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929075.0829482-CDS-F-serratus_M_contig117:710359..710881	1622929075.0829482-CDS-F-serratus_M_contig117:710359..710881	Fucus serratus male	CDS	F-serratus_M_contig117 710360..710881 +
1690962694.0479221-CDS-F-serratus_M_contig117:710359..710881	1690962694.0479221-CDS-F-serratus_M_contig117:710359..710881	Fucus serratus male	CDS	F-serratus_M_contig117 710360..710881 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig117:708528..711251+
coding sequence from alignment at F-serratus_M_contig117:708528..711251+

protein sequence of mRNA_F-serratus_M_contig117.1402.1

>prot_F-serratus_M_contig117.1402.1 ID=prot_F-serratus_M_contig117.1402.1|Name=mRNA_F-serratus_M_contig117.1402.1|organism=Fucus serratus male|type=polypeptide|length=174bp
MLRFLFVSAVMVERLRSQGAWAFTPSTPRPSYSAISVTATAPERSGGGRS
RRYQDPRAPRGPTWLSGSARFYRPSLPRARSAWPRNARGDKEENDEPNLP
GSGLRGVDTSYLEGSEKANAEWFQRTAEREARGELAWYEDPVIYIAILGL
VPLLILAWGVVNCYVPGFCESSF*

mRNA from alignment at F-serratus_M_contig117:708528..711251+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig117.1402.1 ID=mRNA_F-serratus_M_contig117.1402.1|Name=mRNA_F-serratus_M_contig117.1402.1|organism=Fucus serratus male|type=mRNA|length=2724bp|location=Sequence derived from alignment at F-serratus_M_contig117:708528..711251+ (Fucus serratus male)
CTGCCGGTGAGACGCCATCTGACAAACCCAAGAAAAAACAAGGTGGTTTG
GTGGCGCTTCTGAATCGAACGGACTTTCAACATAGGTACTCGGCTTCAGT
CCGAGTTTAAGAGGTGGGTAAGTGCTCCTCTCGCATGATTTGTTACGGTT
GGTGGCAATTGTAGGGGAGTAGCTACCATCATGTGGAGGTTACATGAGCG
CTGACGCCAACACGAACAACCTCGATATTGCTGTTATTGGGGAGACCACT
TACCTGATACTGTACTACTGTTTGTAGATCCCATGACGAAGGCCTTGTGT
ATTTGCAGACTATTTGCCCACCTTAATATTATGACATTCTGTCCCCGACA
CTATGCTGTTGACGCTGTGCGAGTACTACTGTTGTTGTGTAGCCTGCAAT
GGACTTCGATTCATCAATAATACTTGAACGCATTTGAACCTTCTGATTAG
TCAAAAGGTTTGGGTGGGAACATTGACTGTAGGGACAAAAAACTCTACAC
GGTATCGATAGGGTTCCCCAATGTTTAAATAAAAATATGAATGCACCTAG
ACCTTCTGATTACATAGGGTCAACAGTATAATATCGGGGAGAAGTCCACC
GTTATACTGTACACTTACAACAAATACCATGTAGGGACACCAAGACAAAA
CGAAGAACAATATCAGACCAGGTATACAGTGTACAGTATTTTTGGACCAA
GAGTGTTAATCTACGGTACAGTAATATCGTATAGAAGAATGTAAAGTTAA
AACTGAGGTTTGGTGTTTGTTATTTCGATGCAGGAGGTCTACACGTCATA
GATGTGTATAGGGCCTCAAATTTACAATAATACTGGTATGTCCTTTAACT
GTTCTGGTGTACCTGCATGACAACTACCGGTACGTAATGAATGTACAAAA
TAACGGTGCGATTCTCCCCAATATTGTACTGTCGACCCTATTCGCATGCT
TAGATTATTATTAATAGTACCACGCGGACAGGGAAATATTATTTTTCCTT
GTTCAGCTGACCACGAGCAGGATTGGCAACCATATCCGGTTGATCCATAC
TCTTGCTATATTTGCGACCATACACGCCGCGGAACTCGGGAGGAATCCCA
TAAGTAAGCACAAGATTCAGCCTGAGTATGGAGATGAGCAGGCTAACGCG
GGACGGGACTGCCGAACCCGTCTCGCGAGACCAAATTTTCAGGCACGAAC
GCGGACAAGGGAATATTCATTTTCCCTGTTCAGCCGACCACGAGCAGGAT
TGGCAACCTTACCCGGTTGATCCATACTCTTGCTATCATATATGTGTGAC
CATACTTCGTACATACATACATGCATACGCACAGTACCATAGGGAAACCC
GAATGTATCCCTTACAAGTAAAGAGCTTTTTCCCTTACAGCCTATATTCC
CACCTAAACGTTTTGACATCCCCCCAATCCCTGATTGGGTGGATGTTTGA
TTACATTATTATATTGATATTAATACAGTACAAGATTAAGATACATTCAT
AGACTATTTCCCCAACTTTCTCGCTTGAGATGATCGTCAGTTCTGAAAGT
TTCTGTCTATTAACAGACGTTGAGTCACTCTTGCACCCCAAAAGCAGCAT
GATATATTTTATACGTACAACAAAAACAGGAAAATACATTAACTCAGAAT
GTGCGAATTCGAGTTAATGACCAGAACCGTGCCCACAGGAGCATATATAT
GCATCCGATACTGTAGGGTCAAAAATAAAAAATAAACAGTCTCTTGATTT
ACTTTGCGATAGCGACGCCATGCTTTCGACATGTTTCTGTTGTTTTTCTC
AAACAGGAGAATATAAACAACGAAGTTTCACGATGCTACGCTTCCTCTTC
GTTTCGGCCGTGATGGTGGAGAGACTCCGTTCCCAGGGCGCATGGGCGTT
CACTCCGTCGACTCCGCGCCCATCCTATTCAGCAATTTCGGTAACTGCGA
CCGCTCCCGAACGTAGTGGAGGTGGTAGAAGTCGACGCTACCAAGATCCA
CGAGCCCCACGCGGACCCACGTGGCTCTCGGGCTCAGCAAGGTTTTACAG
GCCTTCGCTGCCCAGGGCGCGGAGCGCGTGGCCGCGGAACGCTCGAGGAG
ACAAGGAGGAAAACGATGAGCCAAACCTCCCGGGGAGTGGGTTGCGCGGG
GTGGACACGAGCTATCTCGAGGGCAGCGAGAAGGCCAATGCCGAGTGGTT
TCAGCGGACGGCGGAGCGTGAGGCAAGAGGAGAGTTAGCTTGGTACGAAG
ATCCCGTCATTTATATCGCAATCCTGGGGCTGGTGCCCCTGCTCATTCTC
GCGTGGGGCGTGGTCAACTGCTACGTTCCAGGTTTTTGCGAAAGCTCGTT
TTGATCACGGGGCATATACTTTGAAAAACGGCCGACGAATACCACTACAG
TAGTACCGCGCGGTTCTCAGATGACAAATGAGCGATAAATGAGCTCTTAC
CATGCCAGGTATTCGGGAGATCTTTCAGGCTTGAGTTGAGGTACGACGTT
GACGTTGTTTCTAAGAACGGTTGCGATGAATTCGCTTCCCGATTATGAGA
CCGCAGAAGAAACCCGACTTCTTGACCACTCGGTTTTTAGAACAGGGACA
GTCTCCACCCTAGATGTTTATCAACAATACCGGTACCGGTATATATAATG
TATACTGGTATAGACTACAGTATAGCTCCAAAGCAGGAGACGTGGATATC
TTGAGAGCGCAGTGCGACGAGAGG

Coding sequence (CDS) from alignment at F-serratus_M_contig117:708528..711251+

>mRNA_F-serratus_M_contig117.1402.1 ID=mRNA_F-serratus_M_contig117.1402.1|Name=mRNA_F-serratus_M_contig117.1402.1|organism=Fucus serratus male|type=CDS|length=1044bp|location=Sequence derived from alignment at F-serratus_M_contig117:708528..711251+ (Fucus serratus male)
ATGCTACGCTTCCTCTTCGTTTCGGCCGTGATGGTGGAGAGACTCCGTTC
CCAGGGCGCATGGGCGTTCACTCCGTCGACTCCGCGCCCATCCTATTCAG
CAATTTCGGTAACTGCGACCGCTCCCGAACGTAGTGGAGGTGGTAGAAGT
CGACGCTACCAAGATCCACGAGCCCCACGCGGACCCACGTGGCTCTCGGG
CTCAGCAAGGTTTTACAGGCCTTCGCTGCCCAGGGCGCGGAGCGCGTGGC
CGCGGAACGCTCGAGGAGACAAGGAGGAAAACGATGAGCCAAACCTCCCG
GGGAGTGGGTTGCGCGGGGTGGACACGAGCTATCTCGAGGGCAGCGAGAA
GGCCAATGCCGAGTGGTTTCAGCGGACGGCGGAGCGTGAGGCAAGAGGAG
AGTTAGCTTGGTACGAAGATCCCGTCATTTATATCGCAATCCTGGGGCTG
GTGCCCCTGCTCATTCTCGCGTGGGGCGTGGTCAACTGCTACGTTCCAGG
TTTTTGCGAAAGCTCGTTTTGAATGCTACGCTTCCTCTTCGTTTCGGCCG
TGATGGTGGAGAGACTCCGTTCCCAGGGCGCATGGGCGTTCACTCCGTCG
ACTCCGCGCCCATCCTATTCAGCAATTTCGGTAACTGCGACCGCTCCCGA
ACGTAGTGGAGGTGGTAGAAGTCGACGCTACCAAGATCCACGAGCCCCAC
GCGGACCCACGTGGCTCTCGGGCTCAGCAAGGTTTTACAGGCCTTCGCTG
CCCAGGGCGCGGAGCGCGTGGCCGCGGAACGCTCGAGGAGACAAGGAGGA
AAACGATGAGCCAAACCTCCCGGGGAGTGGGTTGCGCGGGGTGGACACGA
GCTATCTCGAGGGCAGCGAGAAGGCCAATGCCGAGTGGTTTCAGCGGACG
GCGGAGCGTGAGGCAAGAGGAGAGTTAGCTTGGTACGAAGATCCCGTCAT
TTATATCGCAATCCTGGGGCTGGTGCCCCTGCTCATTCTCGCGTGGGGCG
TGGTCAACTGCTACGTTCCAGGTTTTTGCGAAAGCTCGTTTTGA