mRNA_F-serratus_M_contig117.1397.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig117.1397.1
Unique NamemRNA_F-serratus_M_contig117.1397.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig117.1397.1 vs. uniprot
Match: A0A6H5KCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG1_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 2.300e-25
Identity = 61/119 (51.26%), Postives = 78/119 (65.55%), Query Frame = 1 
Query:    1 GNFSTKISLAERERRSEQLLK--SIYLPSE--NQGSAPFGT----RLAAFPEASRQSSGGYWIPEDGEDTLPPPSAYEIEETAFMMKKYNNIMERLRTTGFDEELSDGYKPKIYDLTGG 333
            GN STKISL ER RR+  L    S + P+   ++G   + T    + A FPE SR   GGY++ E   DTLPPPSA+E++E A MMK YN++MERLRTTG DE L +G+ P+IYD T G
Sbjct: 2518 GNCSTKISLEERSRRNRALSAGTSPFFPARYGHRGRRGYRTAQQAKPAQFPEESRLPGGGYFVEEGPNDTLPPPSAFEMQEAAHMMKVYNDMMERLRTTGMDETLPNGFTPRIYDFTDG 2636
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig117.1397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KCG1_9PHAE2.300e-2551.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig117contigF-serratus_M_contig117:631673..632023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size351
Cds size117
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig117.1397.1prot_F-serratus_M_contig117.1397.1Fucus serratus malepolypeptideF-serratus_M_contig117 631901..632017 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929074.5254025-UTR-F-serratus_M_contig117:631672..6319001622929074.5254025-UTR-F-serratus_M_contig117:631672..631900Fucus serratus maleUTRF-serratus_M_contig117 631673..631900 +
1690962693.7495723-UTR-F-serratus_M_contig117:631672..6319001690962693.7495723-UTR-F-serratus_M_contig117:631672..631900Fucus serratus maleUTRF-serratus_M_contig117 631673..631900 +
1622929074.5515118-UTR-F-serratus_M_contig117:632017..6320231622929074.5515118-UTR-F-serratus_M_contig117:632017..632023Fucus serratus maleUTRF-serratus_M_contig117 632018..632023 +
1690962693.774815-UTR-F-serratus_M_contig117:632017..6320231690962693.774815-UTR-F-serratus_M_contig117:632017..632023Fucus serratus maleUTRF-serratus_M_contig117 632018..632023 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929074.5387115-CDS-F-serratus_M_contig117:631900..6320171622929074.5387115-CDS-F-serratus_M_contig117:631900..632017Fucus serratus maleCDSF-serratus_M_contig117 631901..632017 +
1690962693.7639241-CDS-F-serratus_M_contig117:631900..6320171690962693.7639241-CDS-F-serratus_M_contig117:631900..632017Fucus serratus maleCDSF-serratus_M_contig117 631901..632017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig117.1397.1

>prot_F-serratus_M_contig117.1397.1 ID=prot_F-serratus_M_contig117.1397.1|Name=mRNA_F-serratus_M_contig117.1397.1|organism=Fucus serratus male|type=polypeptide|length=39bp
MMKKYNNIMERLRTTGFDEELSDGYKPKIYDLTGGPGR*
back to top

mRNA from alignment at F-serratus_M_contig117:631673..632023+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig117.1397.1 ID=mRNA_F-serratus_M_contig117.1397.1|Name=mRNA_F-serratus_M_contig117.1397.1|organism=Fucus serratus male|type=mRNA|length=351bp|location=Sequence derived from alignment at F-serratus_M_contig117:631673..632023+ (Fucus serratus male)
GGAAATTTCTCGACAAAAATTTCTCTAGCGGAACGAGAAAGGAGAAGCGA
GCAACTTCTTAAGAGCATATATCTGCCGTCAGAGAACCAAGGCAGTGCTC
CATTTGGAACGCGACTAGCAGCATTCCCCGAGGCGAGCCGGCAGTCTAGC
GGTGGGTACTGGATACCAGAGGACGGGGAAGATACCCTTCCACCGCCATC
CGCGTACGAGATCGAGGAGACCGCGTTCATGATGAAGAAGTACAACAACA
TCATGGAGCGGCTGCGCACGACGGGTTTCGACGAGGAGCTCTCTGACGGC
TACAAGCCGAAGATCTACGACCTGACCGGCGGACCTGGGCGTTAACGTGC
A
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig117:631673..632023+

>mRNA_F-serratus_M_contig117.1397.1 ID=mRNA_F-serratus_M_contig117.1397.1|Name=mRNA_F-serratus_M_contig117.1397.1|organism=Fucus serratus male|type=CDS|length=234bp|location=Sequence derived from alignment at F-serratus_M_contig117:631673..632023+ (Fucus serratus male)
ATGATGAAGAAGTACAACAACATCATGGAGCGGCTGCGCACGACGGGTTT
CGACGAGGAGCTCTCTGACGGCTACAAGCCGAAGATCTACGACCTGACCG
GCGGACCTGGGCGTTAAATGATGAAGAAGTACAACAACATCATGGAGCGG
CTGCGCACGACGGGTTTCGACGAGGAGCTCTCTGACGGCTACAAGCCGAA
GATCTACGACCTGACCGGCGGACCTGGGCGTTAA
back to top