mRNA_F-serratus_M_contig117.1393.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig117.1393.1
Unique NamemRNA_F-serratus_M_contig117.1393.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig117.1393.1 vs. uniprot
Match: A0A2R4QQ63_9PHAE (Ribosomal protein S14 n=3 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ63_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 7.180e-63
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 
Query:    1 MRSLDFKRRKSYSIYECKRKALNAVATNQNLNISLRWWAQLEKSKLPRQSSLSRVHNRCVETSRSGSVTRFYKLSRLEFRRLASKGVFPGFRKSCW 288
            MRSLDFKRRKSYSIYECKRKALNAVATNQNLNISLRWWAQLEKSKLPRQSSLSRVHNRCVETSRSGSVTRFYKLSRLEFRRLASKGVFPGFRKSCW
Sbjct:    1 MRSLDFKRRKSYSIYECKRKALNAVATNQNLNISLRWWAQLEKSKLPRQSSLSRVHNRCVETSRSGSVTRFYKLSRLEFRRLASKGVFPGFRKSCW 96
[Close]
BLAST of mRNA_F-serratus_M_contig117.1393.1 vs. uniprot
Match: A0A8F0FDH6_9PHAE (Ribosomal protein S14 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0FDH6_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 1.910e-49
Identity = 78/96 (81.25%), Postives = 86/96 (89.58%), Query Frame = 1 
Query:    1 MRSLDFKRRKSYSIYECKRKALNAVATNQNLNISLRWWAQLEKSKLPRQSSLSRVHNRCVETSRSGSVTRFYKLSRLEFRRLASKGVFPGFRKSCW 288
            M+SLD+KRR+S++IYE KRKAL AVATNQNL ISLRWWAQLEKSKLPRQSSLSRVHN CVET+RS SV  FYKLSRL+FRRLASKG  PG RK+CW
Sbjct:    1 MKSLDYKRRQSFAIYEAKRKALQAVATNQNLEISLRWWAQLEKSKLPRQSSLSRVHNHCVETNRSRSVLSFYKLSRLQFRRLASKGALPGLRKACW 96
[Close]
BLAST of mRNA_F-serratus_M_contig117.1393.1 vs. uniprot
Match: Q2TUD9_9PHAE (Ribosomal protein S14 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUD9_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 1.570e-48
Identity = 79/96 (82.29%), Postives = 85/96 (88.54%), Query Frame = 1 
Query:    1 MRSLDFKRRKSYSIYECKRKALNAVATNQNLNISLRWWAQLEKSKLPRQSSLSRVHNRCVETSRSGSVTRFYKLSRLEFRRLASKGVFPGFRKSCW 288
            MRSLD KRR+S++IYE KRKAL AVATNQ+L+ISLRWWAQLEKSKLPRQSSLSRVHN CVET RS SV  FYKLSRL+FRRLASKG F G RKSCW
Sbjct:    1 MRSLDLKRRQSFAIYEAKRKALQAVATNQHLDISLRWWAQLEKSKLPRQSSLSRVHNHCVETGRSRSVISFYKLSRLQFRRLASKGSFSGLRKSCW 96
[Close]
BLAST of mRNA_F-serratus_M_contig117.1393.1 vs. uniprot
Match: V9PAI8_UNDPI (Ribosomal protein S14 n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=V9PAI8_UNDPI)

HSP 1 Score: 155 bits (393), Expect = 1.290e-47
Identity = 71/96 (73.96%), Postives = 87/96 (90.62%), Query Frame = 1 
Query:    1 MRSLDFKRRKSYSIYECKRKALNAVATNQNLNISLRWWAQLEKSKLPRQSSLSRVHNRCVETSRSGSVTRFYKLSRLEFRRLASKGVFPGFRKSCW 288
            MRS+D+KRR+S+++YE +RKAL AVATNQNL +SLRWWAQLEKS+LPRQSSLSRVHN C++T+RS S+  FYKLSRL+F+RL SKG FPGFRK+CW
Sbjct:    1 MRSIDYKRRQSFALYESRRKALQAVATNQNLEVSLRWWAQLEKSQLPRQSSLSRVHNHCIDTNRSRSIISFYKLSRLQFKRLVSKGSFPGFRKACW 96
[Close]
BLAST of mRNA_F-serratus_M_contig117.1393.1 vs. uniprot
Match: A0A8F0FC95_9PHAE (Ribosomal protein S14 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FC95_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.060e-46
Identity = 74/96 (77.08%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:    1 MRSLDFKRRKSYSIYECKRKALNAVATNQNLNISLRWWAQLEKSKLPRQSSLSRVHNRCVETSRSGSVTRFYKLSRLEFRRLASKGVFPGFRKSCW 288
            MR  D+KRR+S+++YE KRKAL AVATNQNLNISLRWWAQLEKSKLPR+SSL RVHN CVET RS SV  FYKLSRL+FRRLASKG   G RK+CW
Sbjct:    1 MRKFDYKRRQSFALYEAKRKALQAVATNQNLNISLRWWAQLEKSKLPRKSSLCRVHNHCVETGRSRSVINFYKLSRLQFRRLASKGALAGLRKACW 96
[Close]
BLAST of mRNA_F-serratus_M_contig117.1393.1 vs. uniprot
Match: A0A3G5FPN0_9PHAE (Ribosomal protein S14 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPN0_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 1.510e-46
Identity = 74/96 (77.08%), Postives = 83/96 (86.46%), Query Frame = 1 
Query:    1 MRSLDFKRRKSYSIYECKRKALNAVATNQNLNISLRWWAQLEKSKLPRQSSLSRVHNRCVETSRSGSVTRFYKLSRLEFRRLASKGVFPGFRKSCW 288
            M+ LD KRR+S+++YE KRKAL AVATNQNL+ISLRWWAQLEKSKLPRQ SLSRVHN CVET+RS SV  FYKLSRL+FRRLASKG   G RK+CW
Sbjct:    1 MKKLDLKRRQSFAVYESKRKALQAVATNQNLDISLRWWAQLEKSKLPRQGSLSRVHNHCVETTRSRSVVSFYKLSRLQFRRLASKGALSGLRKACW 96
[Close]
BLAST of mRNA_F-serratus_M_contig117.1393.1 vs. uniprot
Match: A0A4D6E4T9_9PHAE (Ribosomal protein S14 n=1 Tax=Nereocystis luetkeana TaxID=117523 RepID=A0A4D6E4T9_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 2.150e-46
Identity = 72/96 (75.00%), Postives = 86/96 (89.58%), Query Frame = 1 
Query:    1 MRSLDFKRRKSYSIYECKRKALNAVATNQNLNISLRWWAQLEKSKLPRQSSLSRVHNRCVETSRSGSVTRFYKLSRLEFRRLASKGVFPGFRKSCW 288
            M+ +D+KRR+S+++YE +RKAL AVATNQNL+ISLRWWAQLEKSKLPR+SSLSRVHN CV+T+RS SV  FYKLSRL+FRRL SKG FPG RK+CW
Sbjct:    1 MKFMDYKRRQSFALYESRRKALRAVATNQNLDISLRWWAQLEKSKLPRKSSLSRVHNHCVDTTRSRSVISFYKLSRLQFRRLVSKGSFPGLRKACW 96
[Close]
BLAST of mRNA_F-serratus_M_contig117.1393.1 vs. uniprot
Match: S4S3S6_LAMHY (Ribosomal protein S14 n=45 Tax=Laminariales TaxID=2886 RepID=S4S3S6_LAMHY)

HSP 1 Score: 152 bits (384), Expect = 3.050e-46
Identity = 71/96 (73.96%), Postives = 84/96 (87.50%), Query Frame = 1 
Query:    1 MRSLDFKRRKSYSIYECKRKALNAVATNQNLNISLRWWAQLEKSKLPRQSSLSRVHNRCVETSRSGSVTRFYKLSRLEFRRLASKGVFPGFRKSCW 288
            MR +D+KRRKS+++YE +RKAL A+A NQNL +SLRWWAQLEKSKLPRQSSLSRVHN C++T+RS SV  FYKLSRL+FRRLASKG F G RK+CW
Sbjct:    1 MRGMDYKRRKSFALYESRRKALQAIAMNQNLEVSLRWWAQLEKSKLPRQSSLSRVHNHCIDTNRSRSVLSFYKLSRLQFRRLASKGSFSGLRKACW 96
[Close]
BLAST of mRNA_F-serratus_M_contig117.1393.1 vs. uniprot
Match: A0A516ICK5_9PHAE (Ribosomal protein S14 n=3 Tax=Lessonia TaxID=105411 RepID=A0A516ICK5_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 8.740e-46
Identity = 73/96 (76.04%), Postives = 83/96 (86.46%), Query Frame = 1 
Query:    1 MRSLDFKRRKSYSIYECKRKALNAVATNQNLNISLRWWAQLEKSKLPRQSSLSRVHNRCVETSRSGSVTRFYKLSRLEFRRLASKGVFPGFRKSCW 288
            M+S+D+KRRK + +YE + KAL AVA NQNL ISLRWWAQ+EKSKLPRQSSLSRVHN C+ET+RS SV  FYKLSRL+FRRLASKG F GFRKSCW
Sbjct:    1 MKSIDYKRRKFFVLYEARHKALQAVAMNQNLEISLRWWAQVEKSKLPRQSSLSRVHNYCIETNRSRSVLSFYKLSRLQFRRLASKGSFSGFRKSCW 96
[Close]
BLAST of mRNA_F-serratus_M_contig117.1393.1 vs. uniprot
Match: A0A3Q8QZ17_9PHAE (Ribosomal protein S14 n=3 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A3Q8QZ17_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 1.760e-45
Identity = 72/96 (75.00%), Postives = 84/96 (87.50%), Query Frame = 1 
Query:    1 MRSLDFKRRKSYSIYECKRKALNAVATNQNLNISLRWWAQLEKSKLPRQSSLSRVHNRCVETSRSGSVTRFYKLSRLEFRRLASKGVFPGFRKSCW 288
            MR+LD+KRR+S+ +YE KRK L +VATNQNL+ISLRWWAQLEKSKLPRQSSLSRVHN C+ET+RS SV  FYK+SRL+ RRLASKG  PG RK+CW
Sbjct:    1 MRNLDYKRRRSFFLYESKRKVLQSVATNQNLDISLRWWAQLEKSKLPRQSSLSRVHNHCMETNRSRSVIGFYKMSRLQLRRLASKGSIPGVRKACW 96
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig117.1393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QQ63_9PHAE7.180e-63100.00Ribosomal protein S14 n=3 Tax=Fucus TaxID=3011 Rep... [more]
A0A8F0FDH6_9PHAE1.910e-4981.25Ribosomal protein S14 n=2 Tax=Laminariales TaxID=2... [more]
Q2TUD9_9PHAE1.570e-4882.29Ribosomal protein S14 n=2 Tax=Desmarestia TaxID=31... [more]
V9PAI8_UNDPI1.290e-4773.96Ribosomal protein S14 n=1 Tax=Undaria pinnatifida ... [more]
A0A8F0FC95_9PHAE1.060e-4677.08Ribosomal protein S14 n=1 Tax=Chorda asiatica TaxI... [more]
A0A3G5FPN0_9PHAE1.510e-4677.08Ribosomal protein S14 n=1 Tax=Cladosiphon okamuran... [more]
A0A4D6E4T9_9PHAE2.150e-4675.00Ribosomal protein S14 n=1 Tax=Nereocystis luetkean... [more]
S4S3S6_LAMHY3.050e-4673.96Ribosomal protein S14 n=45 Tax=Laminariales TaxID=... [more]
A0A516ICK5_9PHAE8.740e-4676.04Ribosomal protein S14 n=3 Tax=Lessonia TaxID=10541... [more]
A0A3Q8QZ17_9PHAE1.760e-4575.00Ribosomal protein S14 n=3 Tax=Scytosiphonaceae Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig117contigF-serratus_M_contig117:517482..517772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score79.7
Seed ortholog evalue8.2e-13
Seed eggNOG ortholog349521.HCH_06204
Preferred namerpsN
KEGG koko:K02954
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
EggNOG OGs1MZDT@1224,1S62N@1236,1XKDP@135619,COG0199@1,COG0199@2
COG Functional cat.J
Best tax levelOceanospirillales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size291
Cds size291
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929074.282089-CDS-F-serratus_M_contig117:517481..5177721622929074.282089-CDS-F-serratus_M_contig117:517481..517772Fucus serratus maleCDSF-serratus_M_contig117 517482..517772 +
1690962693.5614321-CDS-F-serratus_M_contig117:517481..5177721690962693.5614321-CDS-F-serratus_M_contig117:517481..517772Fucus serratus maleCDSF-serratus_M_contig117 517482..517772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig117.1393.1prot_F-serratus_M_contig117.1393.1Fucus serratus malepolypeptideF-serratus_M_contig117 517482..517772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig117.1393.1

>prot_F-serratus_M_contig117.1393.1 ID=prot_F-serratus_M_contig117.1393.1|Name=mRNA_F-serratus_M_contig117.1393.1|organism=Fucus serratus male|type=polypeptide|length=97bp
MRSLDFKRRKSYSIYECKRKALNAVATNQNLNISLRWWAQLEKSKLPRQS
SLSRVHNRCVETSRSGSVTRFYKLSRLEFRRLASKGVFPGFRKSCW*
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mRNA from alignment at F-serratus_M_contig117:517482..517772+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig117.1393.1 ID=mRNA_F-serratus_M_contig117.1393.1|Name=mRNA_F-serratus_M_contig117.1393.1|organism=Fucus serratus male|type=mRNA|length=291bp|location=Sequence derived from alignment at F-serratus_M_contig117:517482..517772+ (Fucus serratus male)
ATGAGATCTTTAGATTTTAAAAGACGTAAATCTTACAGTATTTATGAATG
TAAGCGTAAAGCTCTTAATGCTGTCGCGACTAATCAAAATTTAAATATTT
CTTTGCGTTGGTGGGCCCAACTTGAAAAATCTAAATTGCCAAGACAAAGT
AGTTTAAGCAGAGTTCATAACAGATGTGTAGAAACTAGTAGGTCAGGATC
TGTAACACGTTTTTATAAACTTTCAAGATTAGAATTTCGTCGCTTAGCTT
CAAAAGGTGTTTTTCCTGGCTTTCGCAAATCTTGTTGGTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig117:517482..517772+

>mRNA_F-serratus_M_contig117.1393.1 ID=mRNA_F-serratus_M_contig117.1393.1|Name=mRNA_F-serratus_M_contig117.1393.1|organism=Fucus serratus male|type=CDS|length=582bp|location=Sequence derived from alignment at F-serratus_M_contig117:517482..517772+ (Fucus serratus male)
ATGAGATCTTTAGATTTTAAAAGACGTAAATCTTACAGTATTTATGAATG
TAAGCGTAAAGCTCTTAATGCTGTCGCGACTAATCAAAATTTAAATATTT
CTTTGCGTTGGTGGGCCCAACTTGAAAAATCTAAATTGCCAAGACAAAGT
AGTTTAAGCAGAGTTCATAACAGATGTGTAGAAACTAGTAGGTCAGGATC
TGTAACACGTTTTTATAAACTTTCAAGATTAGAATTTCGTCGCTTAGCTT
CAAAAGGTGTTTTTCCTGGCTTTCGCAAATCTTGTTGGTAAATGAGATCT
TTAGATTTTAAAAGACGTAAATCTTACAGTATTTATGAATGTAAGCGTAA
AGCTCTTAATGCTGTCGCGACTAATCAAAATTTAAATATTTCTTTGCGTT
GGTGGGCCCAACTTGAAAAATCTAAATTGCCAAGACAAAGTAGTTTAAGC
AGAGTTCATAACAGATGTGTAGAAACTAGTAGGTCAGGATCTGTAACACG
TTTTTATAAACTTTCAAGATTAGAATTTCGTCGCTTAGCTTCAAAAGGTG
TTTTTCCTGGCTTTCGCAAATCTTGTTGGTAA
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