mRNA_F-serratus_M_contig117.1385.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig117.1385.1
Unique NamemRNA_F-serratus_M_contig117.1385.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig117.1385.1 vs. uniprot
Match: D7FHY1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHY1_ECTSI)

HSP 1 Score: 239 bits (610), Expect = 9.910e-74
Identity = 134/188 (71.28%), Postives = 148/188 (78.72%), Query Frame = 1 
Query:    1 MAGRSSRREGGTGNERIQALVDQKLSEGLQYEALQLYRGVVSRKSARGDDSSAMAIAEQGIGVLLREGYADSATELGNTLVDFLSSHELLPTEERVDVIKRINNNYEDAKRTESLAEEDRQAAEGVEQAGVTDTSGGDIETPRGMPSVGTLQGRFLKLAVAWTAARGPRLAGDPGLCALLGRCLWCEG 564
            MAGRSSR  GG  NERIQ LV+QKL EGLQYEALQLYRGVVSRKSARG+D++A+ IAEQGIGVLL  GYADSATELGN LV  L+ HEL  TEER+++ +R+N  YEDAKR   LAEEDR+ A    Q GV +   G  E  RGM SVG LQGRFLKLAVAWTAARG RL+GDPGLC LLGRCLW EG
Sbjct:    1 MAGRSSR-SGGNSNERIQLLVEQKLGEGLQYEALQLYRGVVSRKSARGNDNAALTIAEQGIGVLLARGYADSATELGNVLVGILNDHELPVTEERLELFRRVNAKYEDAKRAAVLAEEDRRTAAQEGQGGVGEVEEGK-EAGRGMYSVGVLQGRFLKLAVAWTAARGQRLSGDPGLCGLLGRCLWNEG 186
[Close]
BLAST of mRNA_F-serratus_M_contig117.1385.1 vs. uniprot
Match: A0A835ZB05_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB05_9STRA)

HSP 1 Score: 135 bits (340), Expect = 7.750e-34
Identity = 85/188 (45.21%), Postives = 118/188 (62.77%), Query Frame = 1 
Query:    1 MAGRSSRREGGTGNERIQALVDQKLSEGLQYEALQLYRGVVSRKSARGDDSSAMAIAEQGIGVLLREGYADSATELGNTLVDFLSSHELLPTEERVDVIKRINNNYEDAKRTESLAEEDRQAAEGVEQAGVTDTSGGDIETPRGMPSVGTLQGRFLKLAVAWTAARGPRLAGDPGLCALLGRCLWCEG 564
            +AGRS+RR+G    ER++A+V++KL  GL+YEALQLYRG  +RK+ARGD  SA A+AE G  VL++ G+ADSA+EL   LV+    +    T+ER+D I+R++  Y++         + + +  G+ QA         +  P  + S   LQ +FLK AVAWTAA GPR AGD  L AL GRCL+  G
Sbjct:    5 LAGRSTRRQGNGAAERVKAMVEEKLDAGLEYEALQLYRGQAARKAARGDFDSAAAMAETGAQVLMQRGFADSASELSRQLVEIYKENGCDVTQERLDRIQRLDALYQEVANKGPGELKGKGSEAGIAQAR-------QVRHP--VQSGFELQAKFLKAAVAWTAAAGPRPAGDAALNALPGRCLFAMG 183
[Close]
BLAST of mRNA_F-serratus_M_contig117.1385.1 vs. uniprot
Match: D7G1P9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P9_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.050e-15
Identity = 45/69 (65.22%), Postives = 52/69 (75.36%), Query Frame = 3 
Query:  570 DRGMKYLVLGERPQELCDLIVQDVPDEKARELWVAKGVLQFASKSSLRDANALLDAFQRH---KSEKPK 767
            +RG +Y VLGERPQELCDLI+QDV D  AR+L V KGVLQFA K SLRDANALL A +     K++ PK
Sbjct:   49 ERGTRYHVLGERPQELCDLILQDVSDANARKLAVGKGVLQFARKRSLRDANALLAANKMRAEIKNQHPK 117
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig117.1385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FHY1_ECTSI9.910e-7471.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZB05_9STRA7.750e-3445.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G1P9_ECTSI2.050e-1565.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig117contigF-serratus_M_contig117:27521..30486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score244.6
Seed ortholog evalue3.8e-62
Seed eggNOG ortholog2880.D7FHY1
Preferred nameGET4
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006508,GO:0006605,GO:0006612,GO:0006620,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006996,GO:0007029,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0015031,GO:0015833,GO:0016043,GO:0019538,GO:0030163,GO:0031647,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034976,GO:0036503,GO:0036506,GO:0042221,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045048,GO:0045184,GO:0045185,GO:0046907,GO:0050896,GO:0051087,GO:0051179,GO:0051205,GO:0051220,GO:0051234,GO:0051235,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0061024,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071816,GO:0071818,GO:0071840,GO:0072379,GO:0072380,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1904378
EggNOG free text desc.protein insertion into ER membrane
EggNOG OGsKOG3024@1,KOG3024@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size974
Cds size582
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig117.1385.1prot_F-serratus_M_contig117.1385.1Fucus serratus malepolypeptideF-serratus_M_contig117 29129..30486 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929073.0539398-UTR-F-serratus_M_contig117:27520..276071622929073.0539398-UTR-F-serratus_M_contig117:27520..27607Fucus serratus maleUTRF-serratus_M_contig117 27521..27607 -
1690962692.9176493-UTR-F-serratus_M_contig117:27520..276071690962692.9176493-UTR-F-serratus_M_contig117:27520..27607Fucus serratus maleUTRF-serratus_M_contig117 27521..27607 -
1622929073.0871394-UTR-F-serratus_M_contig117:28178..283221622929073.0871394-UTR-F-serratus_M_contig117:28178..28322Fucus serratus maleUTRF-serratus_M_contig117 28179..28322 -
1690962692.9272368-UTR-F-serratus_M_contig117:28178..283221690962692.9272368-UTR-F-serratus_M_contig117:28178..28322Fucus serratus maleUTRF-serratus_M_contig117 28179..28322 -
1622929073.1049876-UTR-F-serratus_M_contig117:28598..286831622929073.1049876-UTR-F-serratus_M_contig117:28598..28683Fucus serratus maleUTRF-serratus_M_contig117 28599..28683 -
1690962692.9350471-UTR-F-serratus_M_contig117:28598..286831690962692.9350471-UTR-F-serratus_M_contig117:28598..28683Fucus serratus maleUTRF-serratus_M_contig117 28599..28683 -
1622929073.1204169-UTR-F-serratus_M_contig117:29052..291281622929073.1204169-UTR-F-serratus_M_contig117:29052..29128Fucus serratus maleUTRF-serratus_M_contig117 29053..29128 -
1690962692.9431245-UTR-F-serratus_M_contig117:29052..291281690962692.9431245-UTR-F-serratus_M_contig117:29052..29128Fucus serratus maleUTRF-serratus_M_contig117 29053..29128 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929073.181151-CDS-F-serratus_M_contig117:29128..292541622929073.181151-CDS-F-serratus_M_contig117:29128..29254Fucus serratus maleCDSF-serratus_M_contig117 29129..29254 -
1690962692.950612-CDS-F-serratus_M_contig117:29128..292541690962692.950612-CDS-F-serratus_M_contig117:29128..29254Fucus serratus maleCDSF-serratus_M_contig117 29129..29254 -
1622929073.1991286-CDS-F-serratus_M_contig117:30030..304861622929073.1991286-CDS-F-serratus_M_contig117:30030..30486Fucus serratus maleCDSF-serratus_M_contig117 30031..30486 -
1690962692.9581435-CDS-F-serratus_M_contig117:30030..304861690962692.9581435-CDS-F-serratus_M_contig117:30030..30486Fucus serratus maleCDSF-serratus_M_contig117 30031..30486 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig117.1385.1

>prot_F-serratus_M_contig117.1385.1 ID=prot_F-serratus_M_contig117.1385.1|Name=mRNA_F-serratus_M_contig117.1385.1|organism=Fucus serratus male|type=polypeptide|length=194bp
MAGRSSRREGGTGNERIQALVDQKLSEGLQYEALQLYRGVVSRKSARGDD
SSAMAIAEQGIGVLLREGYADSATELGNTLVDFLSSHELLPTEERVDVIK
RINNNYEDAKRTESLAEEDRQAAEGVEQAGVTDTSGGDIETPRGMPSVGT
LQGRFLKLAVAWTAARGPRLAGDPGLCALLGRCLWCEGARTEA*
back to top

mRNA from alignment at F-serratus_M_contig117:27521..30486-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig117.1385.1 ID=mRNA_F-serratus_M_contig117.1385.1|Name=mRNA_F-serratus_M_contig117.1385.1|organism=Fucus serratus male|type=mRNA|length=2966bp|location=Sequence derived from alignment at F-serratus_M_contig117:27521..30486- (Fucus serratus male)
ATGGCTGGGCGATCATCTCGGAGGGAAGGTGGTACCGGGAATGAGAGAAT
CCAGGCGCTTGTAGACCAAAAATTGTCTGAGGGCCTGCAGTATGAAGCAT
TACAGCTCTACCGAGGGGTTGTGTCTCGAAAGTCGGCCAGGGGCGACGAC
AGTTCGGCGATGGCTATCGCCGAGCAGGGCATCGGTGTGCTCCTGCGCGA
GGGCTACGCGGACTCAGCCACGGAGCTGGGCAACACTTTGGTGGATTTTC
TTAGTAGTCATGAGCTATTGCCGACGGAAGAGCGCGTAGACGTGATCAAG
AGAATCAATAACAATTACGAAGACGCCAAGCGCACCGAATCCCTTGCGGA
GGAGGATAGGCAGGCAGCGGAAGGAGTCGAACAGGCAGGGGTAACGGATA
CGTCTGGGGGGGATATCGAGACTCCTCGAGGGATGCCCTCAGTCGGCACT
CTACAGGTACAGTATTTACGACTACGGTCAACTGAATGTAATGCAGTAGT
ATATACGGTACAACATGTCAAATACGAGGGAGTTATATGGTTACAGTAGT
ACCCTCTTGAATCTTCGACACCATGCCTCCACATTAGCACGTGGGGCTGC
GTAGATCACCTCCGAAACCAAGGGCTCGATCAAAGGGCATTATCACTTGA
CCATGGTACAGGCGAATGCCTACGATTTTCCTTGCTGGTGCTTCCCGTTG
GCTGCCAGCTTTCCGAAAGGTGGATGATAAGGGCTGACACAGACATGAAC
CCGATTGATGCTCTGTCTACCCAATACATGTAGCTTGTTTAAATAAAACA
GTAAATTCAGAAGCAAGGACACATTAATATTAAAGGCCGCCCGTCGTGGA
GGAATGAATGCAAACGTTTTGGAGGAATGTAGTTTAAATATCAGGGTCTA
ATGACCTGTTACGTTTCAAAAGCATCAACCGTATGCAATGCCCCCAGAAT
CCGCGACCTTTACCCGACCGGATTACATGACCCAATTCGATAGGGCTGTA
TTCTGTAATGTAAACGGGTAAAGCTTACCGTCACCTTTCACGAAGGCCTA
GAGCTAACCATTTTCAACATGCCGCCATCGCTTATGCCCTTCAGCTGTCT
TTCATCAATGCATCGTAACCGCCGACATCAAATTGACTGACCGCTGCTCA
GTATTCAGCTGCGCCCAAACTTCGCCCTCGAAAATGCCTCCGACAAAGCC
CTGGTTCGGTGCCTACGTATTTACCAAACTAGGGGAGATTCCTCAAGCTC
GCAGTCGCATGGACGGCCGCGCGCGGGCCACGCTTGGCCGGCGATCCCGG
ACTATGCGCCCTCCTCGGGCGATGTCTTTGGTGCGAAGGGGCAAGGACCG
AGGCATGAAATACCTCGTGCTCGGGGAGCGACCGCAAGAACTGTGCGATC
TCATCGTACAGGACGTGCCAGATGAGAAGGCAAGGTATGTGTGTACGTAT
GATATAACCTTGTGTTGAGATTGGGAAGGATTCTACAACGGGAAAAAACG
AGGAGCAGCTGCAGCAGCGGGCATTTCTTGTGCACGCTTATGCTATCACG
GCGCTTTCACCGGCGATTCTCTCCGATTCGGATTGTCTCCCTTCCACGTA
CATATTTTCGAGTGGGTGTTTTTTTCCGCGTTACAGCTCCGTGCGTTGTT
GCGAGACCTTGGCTGGTGGGTGGTTGAAATGGAGGTTGTGCTGGACTCCG
GTGGATTCATCCACGTTGGACGGGCGAATACGAAGAACGGCCCCCTTCAC
TCTCTCCCACCGCCTCACGCTTTCCATATTTGCGTGTCTCGTCCCCATCT
CAGGGAGTTGTGGGTTGCTAAGGGCGTGCTGCAGTTTGCTAGCAAGTCAA
GCCTGCGGGACGCAAATGCGTTGTTGGACGCTTTTCAGGTGAGAGACAAG
ACTCCAGAAGAACGGTACAAGGGAGCGCAGGATGTCCCATCCTCCTACAT
TGCTTATTTATCCTCCTACAAGGAAGGCGGGGGGCGGGTAGCACTCAAAT
TGTTGCCAAGAATAGAGGGATATTTGACGATCTCCAACTGATCTCACTCG
AGGAAGTGTCACGTGCCGAGCTTGGCCCGCGAGCGGTACAGGACGGGAGT
CTTTTGCCGTCCGTGCTCTCACTCGTCCGCGACCGCATCTGGTGGGATCT
CGCGTGCTGAACAGCGCCATAAATCGGAGAAGCCGAAAGGATTGCTTGCC
TTTTGCGGGTTGCTGCTCAAGACGTGTGAGTACGACGCTGCGCCCGTGTT
CAAAAAGCTGCTGGAGGTATTCGGGGCCGAGCTGTCTGTGGACAACGCGC
TGTTCGGGGTGAGCATGCTCCAGACGTTTTTTCGGATGATCGAAGAGCAG
GCAGTTTTCCGTTACCACGAGCCCACCAGCAGGAGTATAGGGCGCGACCC
GCAGGGATGTCAACCTTGCTATGAACTCCACTCTAGAAATCGCTGACGTC
TTGGTGTTACAGAAAAACGGCGTTCGTGTAACGTTGACGTCCGGCCGCCC
CCCCTCCTTAAGACACCACAAATTCCGACCTACCAGGTGTAGCGGGTGTT
TCGGCATCAGCTGCGGTGAAAGTGGCTGGAAATGGTTCCCTTTTTTGGTT
TCGACGTAAATGCGAAGCTTTTCCAAGACATGGCGCGCTGCGATTGGTAT
CAACTGTACAAGAGTGCAGTACATTTCTACTGTAGCGATAAAGCTTCTCA
GCTGCTTGCCCCTTGCGCCGTTCAAGCTCTGGATGAGCCTTGGGTCAAGC
ACTGCTCTCTACCTTTGTAATGACAACAGACATGTACCCACAGTCGGTTT
TTGTGCATTGAGATACTGTCCATCCCCCGGCGTTGCGCGTTTCCTGGCGA
CGTTTTGGTGTGATTTTGTATTGACGCAGTTCGTTGAGAAGATCGGCATC
GTGTACTTCCACGTTCGACTCAGACCGGCTTCCATGCTCGACAACATCAT
GGGGATGCTGGGCGGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig117:27521..30486-

>mRNA_F-serratus_M_contig117.1385.1 ID=mRNA_F-serratus_M_contig117.1385.1|Name=mRNA_F-serratus_M_contig117.1385.1|organism=Fucus serratus male|type=CDS|length=1164bp|location=Sequence derived from alignment at F-serratus_M_contig117:27521..30486- (Fucus serratus male)
ATGGCTGGGCGATCATCTCGGAGGGAAGGTGGTACCGGGAATGAGAGAAT
CCAGGCGCTTGTAGACCAAAAATTGTCTGAGGGCCTGCAGTATGAAGCAT
TACAGCTCTACCGAGGGGTTGTGTCTCGAAAGTCGGCCAGGGGCGACGAC
AGTTCGGCGATGGCTATCGCCGAGCAGGGCATCGGTGTGCTCCTGCGCGA
GGGCTACGCGGACTCAGCCACGGAGCTGGGCAACACTTTGGTGGATTTTC
TTAGTAGTCATGAGCTATTGCCGACGGAAGAGCGCGTAGACGTGATCAAG
AGAATCAATAACAATTACGAAGACGCCAAGCGCACCGAATCCCTTGCGGA
GGAGGATAGGCAGGCAGCGGAAGGAGTCGAACAGGCAGGGGTAACGGATA
CGTCTGGGGGGGATATCGAGACTCCTCGAGGGATGCCCTCAGTCGGCACT
CTACAGATGGCTGGGCGATCATCTCGGAGGGAAGGTGGTACCGGGAATGA
GAGAATCCAGGCGCTTGTAGACCAAAAATTGTCTGAGGGCCTGCAGTATG
AAGCATTACAGCTCTACCGAGGGGTTGTGTCTCGAAAGTCGGCCAGGGGC
GACGACAGTTCGGCGATGGCTATCGCCGAGCAGGGCATCGGTGTGCTCCT
GCGCGAGGGCTACGCGGACTCAGCCACGGAGCTGGGCAACACTTTGGTGG
ATTTTCTTAGTAGTCATGAGCTATTGCCGACGGAAGAGCGCGTAGACGTG
ATCAAGAGAATCAATAACAATTACGAAGACGCCAAGCGCACCGAATCCCT
TGCGGAGGAGGATAGGCAGGCAGCGGAAGGAGTCGAACAGGCAGGGGTAA
CGGATACGTCTGGGGGGGATATCGAGACTCCTCGAGGGATGCCCTCAGTC
GGCACTCTACAGGGGAGATTCCTCAAGCTCGCAGTCGCATGGACGGCCGC
GCGCGGGCCACGCTTGGCCGGCGATCCCGGACTATGCGCCCTCCTCGGGC
GATGTCTTTGGTGCGAAGGGGCAAGGACCGAGGCATGAGGGAGATTCCTC
AAGCTCGCAGTCGCATGGACGGCCGCGCGCGGGCCACGCTTGGCCGGCGA
TCCCGGACTATGCGCCCTCCTCGGGCGATGTCTTTGGTGCGAAGGGGCAA
GGACCGAGGCATGA
back to top